data_7Z8D # _model_server_result.job_id JyhoyqaBKdVZthGinD0MPA _model_server_result.datetime_utc '2024-11-28 11:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7Z8D # _exptl.entry_id 7Z8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z8D _cell.length_a 102.5 _cell.length_b 102.5 _cell.length_c 237.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 M N N ? 4 T N N ? 4 U N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 513 n n N1 CM1 LDA sing 514 n n N1 CM2 LDA sing 515 n n N1 C1 LDA sing 516 n n CM1 HM11 LDA sing 517 n n CM1 HM12 LDA sing 518 n n CM1 HM13 LDA sing 519 n n CM2 HM21 LDA sing 520 n n CM2 HM22 LDA sing 521 n n CM2 HM23 LDA sing 522 n n C1 C2 LDA sing 523 n n C1 H11 LDA sing 524 n n C1 H12 LDA sing 525 n n C2 C3 LDA sing 526 n n C2 H21 LDA sing 527 n n C2 H22 LDA sing 528 n n C3 C4 LDA sing 529 n n C3 H31 LDA sing 530 n n C3 H32 LDA sing 531 n n C4 C5 LDA sing 532 n n C4 H41 LDA sing 533 n n C4 H42 LDA sing 534 n n C5 C6 LDA sing 535 n n C5 H51 LDA sing 536 n n C5 H52 LDA sing 537 n n C6 C7 LDA sing 538 n n C6 H61 LDA sing 539 n n C6 H62 LDA sing 540 n n C7 C8 LDA sing 541 n n C7 H71 LDA sing 542 n n C7 H72 LDA sing 543 n n C8 C9 LDA sing 544 n n C8 H81 LDA sing 545 n n C8 H82 LDA sing 546 n n C9 C10 LDA sing 547 n n C9 H91 LDA sing 548 n n C9 H92 LDA sing 549 n n C10 C11 LDA sing 550 n n C10 H101 LDA sing 551 n n C10 H102 LDA sing 552 n n C11 C12 LDA sing 553 n n C11 H111 LDA sing 554 n n C11 H112 LDA sing 555 n n C12 H121 LDA sing 556 n n C12 H122 LDA sing 557 n n C12 H123 LDA sing 558 n n # _atom_sites.entry_id 7Z8D _atom_sites.fract_transf_matrix[1][1] 0.009756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 BCL L 1 301 302 BCL BCL . F 5 BCL L 1 302 304 BCL BCL . G 6 BPH L 1 303 402 BPH BPH . H 7 D12 L 1 304 805 D12 UNL . I 8 MYS L 1 305 807 MYS UNL . J 9 OLC L 1 306 1 OLC OLC . K 10 NKP M 1 401 301 NKP NKP . L 10 NKP M 1 402 401 NKP NKP . M 4 LDA M 1 403 402 LDA LDA . N 11 U10 M 1 404 403 U10 U10 . O 5 BCL M 1 405 301 BCL BCL . P 5 BCL M 1 406 303 BCL BCL . Q 6 BPH M 1 407 401 BPH BPH . R 12 FE M 1 408 500 FE FE . S 13 SPN M 1 409 600 SPN SPN . T 4 LDA M 1 410 701 LDA LDA . U 4 LDA M 1 411 705 LDA LDA . V 4 LDA M 1 412 709 LDA LDA . W 7 D12 M 1 413 800 D12 UNL . X 14 EDO M 1 414 54 EDO EDO . Y 15 PO4 M 1 415 1 PO4 PO4 . Z 16 HOH H 1 401 77 HOH HOH . Z 16 HOH H 2 402 70 HOH HOH . Z 16 HOH H 3 403 39 HOH HOH . Z 16 HOH H 4 404 164 HOH HOH . Z 16 HOH H 5 405 95 HOH HOH . Z 16 HOH H 6 406 35 HOH HOH . Z 16 HOH H 7 407 154 HOH HOH . Z 16 HOH H 8 408 25 HOH HOH . Z 16 HOH H 9 409 126 HOH HOH . Z 16 HOH H 10 410 54 HOH HOH . Z 16 HOH H 11 411 48 HOH HOH . Z 16 HOH H 12 412 179 HOH HOH . Z 16 HOH H 13 413 3 HOH HOH . Z 16 HOH H 14 414 91 HOH HOH . Z 16 HOH H 15 415 142 HOH HOH . Z 16 HOH H 16 416 83 HOH HOH . Z 16 HOH H 17 417 178 HOH HOH . Z 16 HOH H 18 418 104 HOH HOH . Z 16 HOH H 19 419 116 HOH HOH . Z 16 HOH H 20 420 135 HOH HOH . Z 16 HOH H 21 421 92 HOH HOH . Z 16 HOH H 22 422 171 HOH HOH . Z 16 HOH H 23 423 18 HOH HOH . Z 16 HOH H 24 424 63 HOH HOH . Z 16 HOH H 25 425 81 HOH HOH . Z 16 HOH H 26 426 138 HOH HOH . Z 16 HOH H 27 427 111 HOH HOH . Z 16 HOH H 28 428 172 HOH HOH . Z 16 HOH H 29 429 41 HOH HOH . Z 16 HOH H 30 430 27 HOH HOH . Z 16 HOH H 31 431 20 HOH HOH . Z 16 HOH H 32 432 52 HOH HOH . Z 16 HOH H 33 433 107 HOH HOH . Z 16 HOH H 34 434 100 HOH HOH . Z 16 HOH H 35 435 133 HOH HOH . Z 16 HOH H 36 436 146 HOH HOH . Z 16 HOH H 37 437 58 HOH HOH . Z 16 HOH H 38 438 156 HOH HOH . Z 16 HOH H 39 439 75 HOH HOH . Z 16 HOH H 40 440 33 HOH HOH . Z 16 HOH H 41 441 50 HOH HOH . Z 16 HOH H 42 442 131 HOH HOH . Z 16 HOH H 43 443 15 HOH HOH . Z 16 HOH H 44 444 148 HOH HOH . Z 16 HOH H 45 445 61 HOH HOH . Z 16 HOH H 46 446 119 HOH HOH . Z 16 HOH H 47 447 67 HOH HOH . Z 16 HOH H 48 448 5 HOH HOH . Z 16 HOH H 49 449 55 HOH HOH . Z 16 HOH H 50 450 177 HOH HOH . Z 16 HOH H 51 451 134 HOH HOH . Z 16 HOH H 52 452 143 HOH HOH . Z 16 HOH H 53 453 56 HOH HOH . Z 16 HOH H 54 454 42 HOH HOH . Z 16 HOH H 55 455 105 HOH HOH . Z 16 HOH H 56 456 64 HOH HOH . Z 16 HOH H 57 457 124 HOH HOH . Z 16 HOH H 58 458 162 HOH HOH . Z 16 HOH H 59 459 68 HOH HOH . Z 16 HOH H 60 460 125 HOH HOH . Z 16 HOH H 61 461 89 HOH HOH . Z 16 HOH H 62 462 166 HOH HOH . Z 16 HOH H 63 463 175 HOH HOH . Z 16 HOH H 64 464 110 HOH HOH . Z 16 HOH H 65 465 141 HOH HOH . Z 16 HOH H 66 466 57 HOH HOH . Z 16 HOH H 67 467 93 HOH HOH . Z 16 HOH H 68 468 30 HOH HOH . Z 16 HOH H 69 469 120 HOH HOH . Z 16 HOH H 70 470 147 HOH HOH . Z 16 HOH H 71 471 158 HOH HOH . Z 16 HOH H 72 472 129 HOH HOH . AA 16 HOH L 1 401 176 HOH HOH . AA 16 HOH L 2 402 8 HOH HOH . AA 16 HOH L 3 403 13 HOH HOH . AA 16 HOH L 4 404 109 HOH HOH . AA 16 HOH L 5 405 73 HOH HOH . AA 16 HOH L 6 406 16 HOH HOH . AA 16 HOH L 7 407 72 HOH HOH . AA 16 HOH L 8 408 14 HOH HOH . AA 16 HOH L 9 409 103 HOH HOH . AA 16 HOH L 10 410 60 HOH HOH . AA 16 HOH L 11 411 150 HOH HOH . AA 16 HOH L 12 412 139 HOH HOH . AA 16 HOH L 13 413 49 HOH HOH . AA 16 HOH L 14 414 173 HOH HOH . AA 16 HOH L 15 415 26 HOH HOH . AA 16 HOH L 16 416 17 HOH HOH . AA 16 HOH L 17 417 7 HOH HOH . AA 16 HOH L 18 418 86 HOH HOH . AA 16 HOH L 19 419 136 HOH HOH . AA 16 HOH L 20 420 23 HOH HOH . AA 16 HOH L 21 421 21 HOH HOH . AA 16 HOH L 22 422 51 HOH HOH . AA 16 HOH L 23 423 71 HOH HOH . AA 16 HOH L 24 424 87 HOH HOH . AA 16 HOH L 25 425 78 HOH HOH . AA 16 HOH L 26 426 31 HOH HOH . AA 16 HOH L 27 427 159 HOH HOH . AA 16 HOH L 28 428 28 HOH HOH . AA 16 HOH L 29 429 140 HOH HOH . AA 16 HOH L 30 430 113 HOH HOH . AA 16 HOH L 31 431 1 HOH HOH . AA 16 HOH L 32 432 74 HOH HOH . AA 16 HOH L 33 433 90 HOH HOH . AA 16 HOH L 34 434 10 HOH HOH . AA 16 HOH L 35 435 121 HOH HOH . AA 16 HOH L 36 436 82 HOH HOH . AA 16 HOH L 37 437 102 HOH HOH . AA 16 HOH L 38 438 152 HOH HOH . AA 16 HOH L 39 439 98 HOH HOH . AA 16 HOH L 40 440 108 HOH HOH . AA 16 HOH L 41 441 32 HOH HOH . AA 16 HOH L 42 442 168 HOH HOH . AA 16 HOH L 43 443 65 HOH HOH . AA 16 HOH L 44 444 145 HOH HOH . AA 16 HOH L 45 445 6 HOH HOH . AA 16 HOH L 46 446 79 HOH HOH . AA 16 HOH L 47 447 76 HOH HOH . AA 16 HOH L 48 448 97 HOH HOH . AA 16 HOH L 49 449 117 HOH HOH . AA 16 HOH L 50 450 174 HOH HOH . AA 16 HOH L 51 451 180 HOH HOH . AA 16 HOH L 52 452 169 HOH HOH . AA 16 HOH L 53 453 153 HOH HOH . BA 16 HOH M 1 501 2 HOH HOH . BA 16 HOH M 2 502 132 HOH HOH . BA 16 HOH M 3 503 99 HOH HOH . BA 16 HOH M 4 504 160 HOH HOH . BA 16 HOH M 5 505 40 HOH HOH . BA 16 HOH M 6 506 88 HOH HOH . BA 16 HOH M 7 507 84 HOH HOH . BA 16 HOH M 8 508 19 HOH HOH . BA 16 HOH M 9 509 45 HOH HOH . BA 16 HOH M 10 510 44 HOH HOH . BA 16 HOH M 11 511 69 HOH HOH . BA 16 HOH M 12 512 163 HOH HOH . BA 16 HOH M 13 513 24 HOH HOH . BA 16 HOH M 14 514 165 HOH HOH . BA 16 HOH M 15 515 53 HOH HOH . BA 16 HOH M 16 516 130 HOH HOH . BA 16 HOH M 17 517 127 HOH HOH . BA 16 HOH M 18 518 36 HOH HOH . BA 16 HOH M 19 519 122 HOH HOH . BA 16 HOH M 20 520 114 HOH HOH . BA 16 HOH M 21 521 37 HOH HOH . BA 16 HOH M 22 522 157 HOH HOH . BA 16 HOH M 23 523 101 HOH HOH . BA 16 HOH M 24 524 66 HOH HOH . BA 16 HOH M 25 525 12 HOH HOH . BA 16 HOH M 26 526 118 HOH HOH . BA 16 HOH M 27 527 94 HOH HOH . BA 16 HOH M 28 528 106 HOH HOH . BA 16 HOH M 29 529 144 HOH HOH . BA 16 HOH M 30 530 38 HOH HOH . BA 16 HOH M 31 531 59 HOH HOH . BA 16 HOH M 32 532 151 HOH HOH . BA 16 HOH M 33 533 85 HOH HOH . BA 16 HOH M 34 534 22 HOH HOH . BA 16 HOH M 35 535 96 HOH HOH . BA 16 HOH M 36 536 29 HOH HOH . BA 16 HOH M 37 537 170 HOH HOH . BA 16 HOH M 38 538 112 HOH HOH . BA 16 HOH M 39 539 161 HOH HOH . BA 16 HOH M 40 540 80 HOH HOH . BA 16 HOH M 41 541 167 HOH HOH . BA 16 HOH M 42 542 46 HOH HOH . BA 16 HOH M 43 543 34 HOH HOH . BA 16 HOH M 44 544 115 HOH HOH . BA 16 HOH M 45 545 43 HOH HOH . BA 16 HOH M 46 546 4 HOH HOH . BA 16 HOH M 47 547 123 HOH HOH . BA 16 HOH M 48 548 11 HOH HOH . BA 16 HOH M 49 549 62 HOH HOH . BA 16 HOH M 50 550 149 HOH HOH . BA 16 HOH M 51 551 9 HOH HOH . BA 16 HOH M 52 552 47 HOH HOH . BA 16 HOH M 53 553 155 HOH HOH . BA 16 HOH M 54 554 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . D 4 27.81 -45.467 -38.737 1 54.24 ? N1 LDA 301 H 1 HETATM 2 O O1 LDA . . . D 4 27.542 -45.281 -39.956 1 44.84 ? O1 LDA 301 H 1 HETATM 3 C CM1 LDA . . . D 4 28.235 -46.866 -38.572 1 36.95 ? CM1 LDA 301 H 1 HETATM 4 C CM2 LDA . . . D 4 28.919 -44.586 -38.317 1 53.54 ? CM2 LDA 301 H 1 HETATM 5 C C1 LDA . . . D 4 26.605 -45.179 -37.962 1 38.46 ? C1 LDA 301 H 1 HETATM 6 C C2 LDA . . . D 4 26.855 -45.41 -36.473 1 40.06 ? C2 LDA 301 H 1 HETATM 7 C C3 LDA . . . D 4 25.53 -45.285 -35.721 1 40.65 ? C3 LDA 301 H 1 HETATM 8 C C4 LDA . . . D 4 25.638 -44.514 -34.409 1 43.24 ? C4 LDA 301 H 1 HETATM 9 C C5 LDA . . . D 4 24.238 -44.233 -33.852 1 39.42 ? C5 LDA 301 H 1 HETATM 10 C C6 LDA . . . D 4 24.285 -43.601 -32.463 1 42.79 ? C6 LDA 301 H 1 HETATM 11 C C7 LDA . . . D 4 22.915 -43.454 -31.809 1 42.77 ? C7 LDA 301 H 1 HETATM 12 C C8 LDA . . . D 4 22.996 -42.245 -30.882 1 52.4 ? C8 LDA 301 H 1 HETATM 13 C C9 LDA . . . D 4 21.828 -42.113 -29.916 1 46.4 ? C9 LDA 301 H 1 HETATM 14 C C10 LDA . . . D 4 21.674 -40.642 -29.553 1 64.68 ? C10 LDA 301 H 1 HETATM 15 C C11 LDA . . . D 4 20.542 -40.393 -28.566 1 65.7 ? C11 LDA 301 H 1 HETATM 16 C C12 LDA . . . D 4 21.095 -39.84 -27.256 1 77.92 ? C12 LDA 301 H 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #