data_7Z8D
#
_model_server_result.job_id            qGmJqFiQdcLiX-YEdWNghA 
_model_server_result.datetime_utc      '2024-11-28 10:18:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":414}' 
#
_entry.id    7Z8D 
#
_exptl.entry_id    7Z8D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z8D 
_cell.length_a            102.5 
_cell.length_b            102.5 
_cell.length_c            237.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      14 
_struct_asym.id                             X 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 R FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 414 n n 
C1 C2 EDO sing 415 n n 
C1 H11 EDO sing 416 n n 
C1 H12 EDO sing 417 n n 
O1 HO1 EDO sing 418 n n 
C2 O2 EDO sing 419 n n 
C2 H21 EDO sing 420 n n 
C2 H22 EDO sing 421 n n 
O2 HO2 EDO sing 422 n n 
#
_atom_sites.entry_id                     7Z8D 
_atom_sites.fract_transf_matrix[1][1]    0.009756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 301 702 LDA LDA . 
E 5 BCL L 1 301 302 BCL BCL . 
F 5 BCL L 1 302 304 BCL BCL . 
G 6 BPH L 1 303 402 BPH BPH . 
H 7 D12 L 1 304 805 D12 UNL . 
I 8 MYS L 1 305 807 MYS UNL . 
J 9 OLC L 1 306 1 OLC OLC . 
K 10 NKP M 1 401 301 NKP NKP . 
L 10 NKP M 1 402 401 NKP NKP . 
M 4 LDA M 1 403 402 LDA LDA . 
N 11 U10 M 1 404 403 U10 U10 . 
O 5 BCL M 1 405 301 BCL BCL . 
P 5 BCL M 1 406 303 BCL BCL . 
Q 6 BPH M 1 407 401 BPH BPH . 
R 12 FE M 1 408 500 FE FE . 
S 13 SPN M 1 409 600 SPN SPN . 
T 4 LDA M 1 410 701 LDA LDA . 
U 4 LDA M 1 411 705 LDA LDA . 
V 4 LDA M 1 412 709 LDA LDA . 
W 7 D12 M 1 413 800 D12 UNL . 
X 14 EDO M 1 414 54 EDO EDO . 
Y 15 PO4 M 1 415 1 PO4 PO4 . 
Z 16 HOH H 1 401 77 HOH HOH . 
Z 16 HOH H 2 402 70 HOH HOH . 
Z 16 HOH H 3 403 39 HOH HOH . 
Z 16 HOH H 4 404 164 HOH HOH . 
Z 16 HOH H 5 405 95 HOH HOH . 
Z 16 HOH H 6 406 35 HOH HOH . 
Z 16 HOH H 7 407 154 HOH HOH . 
Z 16 HOH H 8 408 25 HOH HOH . 
Z 16 HOH H 9 409 126 HOH HOH . 
Z 16 HOH H 10 410 54 HOH HOH . 
Z 16 HOH H 11 411 48 HOH HOH . 
Z 16 HOH H 12 412 179 HOH HOH . 
Z 16 HOH H 13 413 3 HOH HOH . 
Z 16 HOH H 14 414 91 HOH HOH . 
Z 16 HOH H 15 415 142 HOH HOH . 
Z 16 HOH H 16 416 83 HOH HOH . 
Z 16 HOH H 17 417 178 HOH HOH . 
Z 16 HOH H 18 418 104 HOH HOH . 
Z 16 HOH H 19 419 116 HOH HOH . 
Z 16 HOH H 20 420 135 HOH HOH . 
Z 16 HOH H 21 421 92 HOH HOH . 
Z 16 HOH H 22 422 171 HOH HOH . 
Z 16 HOH H 23 423 18 HOH HOH . 
Z 16 HOH H 24 424 63 HOH HOH . 
Z 16 HOH H 25 425 81 HOH HOH . 
Z 16 HOH H 26 426 138 HOH HOH . 
Z 16 HOH H 27 427 111 HOH HOH . 
Z 16 HOH H 28 428 172 HOH HOH . 
Z 16 HOH H 29 429 41 HOH HOH . 
Z 16 HOH H 30 430 27 HOH HOH . 
Z 16 HOH H 31 431 20 HOH HOH . 
Z 16 HOH H 32 432 52 HOH HOH . 
Z 16 HOH H 33 433 107 HOH HOH . 
Z 16 HOH H 34 434 100 HOH HOH . 
Z 16 HOH H 35 435 133 HOH HOH . 
Z 16 HOH H 36 436 146 HOH HOH . 
Z 16 HOH H 37 437 58 HOH HOH . 
Z 16 HOH H 38 438 156 HOH HOH . 
Z 16 HOH H 39 439 75 HOH HOH . 
Z 16 HOH H 40 440 33 HOH HOH . 
Z 16 HOH H 41 441 50 HOH HOH . 
Z 16 HOH H 42 442 131 HOH HOH . 
Z 16 HOH H 43 443 15 HOH HOH . 
Z 16 HOH H 44 444 148 HOH HOH . 
Z 16 HOH H 45 445 61 HOH HOH . 
Z 16 HOH H 46 446 119 HOH HOH . 
Z 16 HOH H 47 447 67 HOH HOH . 
Z 16 HOH H 48 448 5 HOH HOH . 
Z 16 HOH H 49 449 55 HOH HOH . 
Z 16 HOH H 50 450 177 HOH HOH . 
Z 16 HOH H 51 451 134 HOH HOH . 
Z 16 HOH H 52 452 143 HOH HOH . 
Z 16 HOH H 53 453 56 HOH HOH . 
Z 16 HOH H 54 454 42 HOH HOH . 
Z 16 HOH H 55 455 105 HOH HOH . 
Z 16 HOH H 56 456 64 HOH HOH . 
Z 16 HOH H 57 457 124 HOH HOH . 
Z 16 HOH H 58 458 162 HOH HOH . 
Z 16 HOH H 59 459 68 HOH HOH . 
Z 16 HOH H 60 460 125 HOH HOH . 
Z 16 HOH H 61 461 89 HOH HOH . 
Z 16 HOH H 62 462 166 HOH HOH . 
Z 16 HOH H 63 463 175 HOH HOH . 
Z 16 HOH H 64 464 110 HOH HOH . 
Z 16 HOH H 65 465 141 HOH HOH . 
Z 16 HOH H 66 466 57 HOH HOH . 
Z 16 HOH H 67 467 93 HOH HOH . 
Z 16 HOH H 68 468 30 HOH HOH . 
Z 16 HOH H 69 469 120 HOH HOH . 
Z 16 HOH H 70 470 147 HOH HOH . 
Z 16 HOH H 71 471 158 HOH HOH . 
Z 16 HOH H 72 472 129 HOH HOH . 
AA 16 HOH L 1 401 176 HOH HOH . 
AA 16 HOH L 2 402 8 HOH HOH . 
AA 16 HOH L 3 403 13 HOH HOH . 
AA 16 HOH L 4 404 109 HOH HOH . 
AA 16 HOH L 5 405 73 HOH HOH . 
AA 16 HOH L 6 406 16 HOH HOH . 
AA 16 HOH L 7 407 72 HOH HOH . 
AA 16 HOH L 8 408 14 HOH HOH . 
AA 16 HOH L 9 409 103 HOH HOH . 
AA 16 HOH L 10 410 60 HOH HOH . 
AA 16 HOH L 11 411 150 HOH HOH . 
AA 16 HOH L 12 412 139 HOH HOH . 
AA 16 HOH L 13 413 49 HOH HOH . 
AA 16 HOH L 14 414 173 HOH HOH . 
AA 16 HOH L 15 415 26 HOH HOH . 
AA 16 HOH L 16 416 17 HOH HOH . 
AA 16 HOH L 17 417 7 HOH HOH . 
AA 16 HOH L 18 418 86 HOH HOH . 
AA 16 HOH L 19 419 136 HOH HOH . 
AA 16 HOH L 20 420 23 HOH HOH . 
AA 16 HOH L 21 421 21 HOH HOH . 
AA 16 HOH L 22 422 51 HOH HOH . 
AA 16 HOH L 23 423 71 HOH HOH . 
AA 16 HOH L 24 424 87 HOH HOH . 
AA 16 HOH L 25 425 78 HOH HOH . 
AA 16 HOH L 26 426 31 HOH HOH . 
AA 16 HOH L 27 427 159 HOH HOH . 
AA 16 HOH L 28 428 28 HOH HOH . 
AA 16 HOH L 29 429 140 HOH HOH . 
AA 16 HOH L 30 430 113 HOH HOH . 
AA 16 HOH L 31 431 1 HOH HOH . 
AA 16 HOH L 32 432 74 HOH HOH . 
AA 16 HOH L 33 433 90 HOH HOH . 
AA 16 HOH L 34 434 10 HOH HOH . 
AA 16 HOH L 35 435 121 HOH HOH . 
AA 16 HOH L 36 436 82 HOH HOH . 
AA 16 HOH L 37 437 102 HOH HOH . 
AA 16 HOH L 38 438 152 HOH HOH . 
AA 16 HOH L 39 439 98 HOH HOH . 
AA 16 HOH L 40 440 108 HOH HOH . 
AA 16 HOH L 41 441 32 HOH HOH . 
AA 16 HOH L 42 442 168 HOH HOH . 
AA 16 HOH L 43 443 65 HOH HOH . 
AA 16 HOH L 44 444 145 HOH HOH . 
AA 16 HOH L 45 445 6 HOH HOH . 
AA 16 HOH L 46 446 79 HOH HOH . 
AA 16 HOH L 47 447 76 HOH HOH . 
AA 16 HOH L 48 448 97 HOH HOH . 
AA 16 HOH L 49 449 117 HOH HOH . 
AA 16 HOH L 50 450 174 HOH HOH . 
AA 16 HOH L 51 451 180 HOH HOH . 
AA 16 HOH L 52 452 169 HOH HOH . 
AA 16 HOH L 53 453 153 HOH HOH . 
BA 16 HOH M 1 501 2 HOH HOH . 
BA 16 HOH M 2 502 132 HOH HOH . 
BA 16 HOH M 3 503 99 HOH HOH . 
BA 16 HOH M 4 504 160 HOH HOH . 
BA 16 HOH M 5 505 40 HOH HOH . 
BA 16 HOH M 6 506 88 HOH HOH . 
BA 16 HOH M 7 507 84 HOH HOH . 
BA 16 HOH M 8 508 19 HOH HOH . 
BA 16 HOH M 9 509 45 HOH HOH . 
BA 16 HOH M 10 510 44 HOH HOH . 
BA 16 HOH M 11 511 69 HOH HOH . 
BA 16 HOH M 12 512 163 HOH HOH . 
BA 16 HOH M 13 513 24 HOH HOH . 
BA 16 HOH M 14 514 165 HOH HOH . 
BA 16 HOH M 15 515 53 HOH HOH . 
BA 16 HOH M 16 516 130 HOH HOH . 
BA 16 HOH M 17 517 127 HOH HOH . 
BA 16 HOH M 18 518 36 HOH HOH . 
BA 16 HOH M 19 519 122 HOH HOH . 
BA 16 HOH M 20 520 114 HOH HOH . 
BA 16 HOH M 21 521 37 HOH HOH . 
BA 16 HOH M 22 522 157 HOH HOH . 
BA 16 HOH M 23 523 101 HOH HOH . 
BA 16 HOH M 24 524 66 HOH HOH . 
BA 16 HOH M 25 525 12 HOH HOH . 
BA 16 HOH M 26 526 118 HOH HOH . 
BA 16 HOH M 27 527 94 HOH HOH . 
BA 16 HOH M 28 528 106 HOH HOH . 
BA 16 HOH M 29 529 144 HOH HOH . 
BA 16 HOH M 30 530 38 HOH HOH . 
BA 16 HOH M 31 531 59 HOH HOH . 
BA 16 HOH M 32 532 151 HOH HOH . 
BA 16 HOH M 33 533 85 HOH HOH . 
BA 16 HOH M 34 534 22 HOH HOH . 
BA 16 HOH M 35 535 96 HOH HOH . 
BA 16 HOH M 36 536 29 HOH HOH . 
BA 16 HOH M 37 537 170 HOH HOH . 
BA 16 HOH M 38 538 112 HOH HOH . 
BA 16 HOH M 39 539 161 HOH HOH . 
BA 16 HOH M 40 540 80 HOH HOH . 
BA 16 HOH M 41 541 167 HOH HOH . 
BA 16 HOH M 42 542 46 HOH HOH . 
BA 16 HOH M 43 543 34 HOH HOH . 
BA 16 HOH M 44 544 115 HOH HOH . 
BA 16 HOH M 45 545 43 HOH HOH . 
BA 16 HOH M 46 546 4 HOH HOH . 
BA 16 HOH M 47 547 123 HOH HOH . 
BA 16 HOH M 48 548 11 HOH HOH . 
BA 16 HOH M 49 549 62 HOH HOH . 
BA 16 HOH M 50 550 149 HOH HOH . 
BA 16 HOH M 51 551 9 HOH HOH . 
BA 16 HOH M 52 552 47 HOH HOH . 
BA 16 HOH M 53 553 155 HOH HOH . 
BA 16 HOH M 54 554 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . X 14 -9.254 -36.578 -56.336 1 68.26 ? C1 EDO 414 M 1 
HETATM 2 O O1 EDO . . . X 14 -9.144 -35.632 -55.267 1 61.21 ? O1 EDO 414 M 1 
HETATM 3 C C2 EDO . . . X 14 -9.313 -37.957 -55.697 1 55.68 ? C2 EDO 414 M 1 
HETATM 4 O O2 EDO . . . X 14 -8.698 -37.814 -54.419 1 48.94 ? O2 EDO 414 M 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#