data_7Z8F
#
_model_server_result.job_id            Dzg5T-OJKWv2Q_YifsM6uA 
_model_server_result.datetime_utc      '2025-09-06 13:06:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RB","auth_seq_id":4704}' 
#
_entry.id    7Z8F 
#
_exptl.entry_id    7Z8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    43-meric 
_pdbx_struct_assembly.oligomeric_count      43 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 21 RB N N 
? 21 SB N N 
? 21 VB N N 
? 21 XB N N 
? 21 BC N N 
? 21 CC N N 
? 21 GC N N 
? 21 HC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 RA O3B ADP . A ADP 800 1_555 SA MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc2 TA O2B ADP . B ADP 800 1_555 UA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc3 VA O2B ADP . C ADP 800 1_555 WA MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc4 XA O2B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc5 XA O3B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc6 ZA O2B ADP . E ADP 800 1_555 AB MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc7 BB MG MG . F MG 801 1_555 CB O2B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc8 DB O3B ADP . G ADP 800 1_555 EB MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc9 FB O2B ADP . H ADP 800 1_555 GB MG MG . H MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc10 HB O2B ADP . I ADP 800 1_555 IB MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc11 JB O2G ATP . J ATP 800 1_555 KB MG MG . J MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc12 PB O3G ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc13 PB O1B ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc14 UB O3G ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc15 UB O1B ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc16 ZB O3G ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc17 ZB O1B ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc18 EC O3G ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc19 EC O1B ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     7Z8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
RA 17 ADP A 1 800 800 ADP ADP . 
SA 18 MG A 1 801 801 MG MG . 
TA 17 ADP B 1 800 800 ADP ADP . 
UA 18 MG B 1 801 801 MG MG . 
VA 17 ADP C 1 800 800 ADP ADP . 
WA 18 MG C 1 801 801 MG MG . 
XA 17 ADP D 1 800 800 ADP ADP . 
YA 18 MG D 1 801 801 MG MG . 
ZA 17 ADP E 1 800 800 ADP ADP . 
AB 18 MG E 1 801 801 MG MG . 
BB 18 MG F 1 801 801 MG MG . 
CB 17 ADP F 1 802 800 ADP ADP . 
DB 17 ADP G 1 800 800 ADP ADP . 
EB 18 MG G 1 801 801 MG MG . 
FB 17 ADP H 1 800 800 ADP ADP . 
GB 18 MG H 1 801 801 MG MG . 
HB 17 ADP I 1 800 800 ADP ADP . 
IB 18 MG I 1 801 801 MG MG . 
JB 19 ATP J 1 800 800 ATP ATP . 
KB 18 MG J 1 801 801 MG MG . 
LB 20 ZN Y 1 501 501 ZN ZN . 
MB 20 ZN Y 1 502 502 ZN ZN . 
NB 20 ZN Y 1 503 503 ZN ZN . 
OB 17 ADP e 1 4701 4701 ADP ADP . 
PB 19 ATP e 1 4702 4702 ATP ATP . 
QB 18 MG e 1 4703 4703 MG MG . 
RB 21 ANP e 1 4704 5003 ANP ANP . 
SB 21 ANP e 1 4705 5004 ANP ANP . 
TB 17 ADP f 1 4701 4701 ADP ADP . 
UB 19 ATP f 1 4702 4702 ATP ATP . 
VB 21 ANP f 1 4703 5004 ANP ANP . 
WB 18 MG f 1 4704 4703 MG MG . 
XB 21 ANP f 1 4705 5003 ANP ANP . 
YB 17 ADP m 1 4701 4701 ADP ADP . 
ZB 19 ATP m 1 4702 4702 ATP ATP . 
AC 18 MG m 1 4703 4703 MG MG . 
BC 21 ANP m 1 4704 5003 ANP ANP . 
CC 21 ANP m 1 4705 5004 ANP ANP . 
DC 17 ADP n 1 4701 4701 ADP ADP . 
EC 19 ATP n 1 4702 4702 ATP ATP . 
FC 18 MG n 1 4703 4703 MG MG . 
GC 21 ANP n 1 4704 5003 ANP ANP . 
HC 21 ANP n 1 4705 5004 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . RB 21 455.509 488.612 578.839 1 48.98 ? PG ANP 4704 e 1 
HETATM 2 O O1G ANP . . . RB 21 454.065 488.451 578.488 1 48.98 ? O1G ANP 4704 e 1 
HETATM 3 O O2G ANP . . . RB 21 455.647 488.758 580.401 1 48.98 ? O2G ANP 4704 e 1 
HETATM 4 O O3G ANP . . . RB 21 456.327 487.352 578.347 1 48.98 ? O3G ANP 4704 e 1 
HETATM 5 P PB ANP . . . RB 21 457.75 490.12 578.472 1 48.98 ? PB ANP 4704 e 1 
HETATM 6 O O1B ANP . . . RB 21 458.441 488.874 578.037 1 48.98 ? O1B ANP 4704 e 1 
HETATM 7 O O2B ANP . . . RB 21 457.901 490.29 580.009 1 48.98 ? O2B ANP 4704 e 1 
HETATM 8 N N3B ANP . . . RB 21 456.126 490.001 578.098 1 48.98 ? N3B ANP 4704 e 1 
HETATM 9 P PA ANP . . . RB 21 459.151 491.171 576.388 1 48.98 ? PA ANP 4704 e 1 
HETATM 10 O O1A ANP . . . RB 21 458.299 490.523 575.369 1 48.98 ? O1A ANP 4704 e 1 
HETATM 11 O O2A ANP . . . RB 21 460.441 490.402 576.684 1 48.98 ? O2A ANP 4704 e 1 
HETATM 12 O O3A ANP . . . RB 21 458.39 491.347 577.765 1 48.98 ? O3A ANP 4704 e 1 
HETATM 13 O O5' ANP . . . RB 21 459.443 492.651 575.933 1 48.98 ? O5' ANP 4704 e 1 
HETATM 14 C C5' ANP . . . RB 21 458.728 493.737 576.557 1 48.98 ? C5' ANP 4704 e 1 
HETATM 15 C C4' ANP . . . RB 21 459.087 495.058 575.926 1 48.98 ? C4' ANP 4704 e 1 
HETATM 16 O O4' ANP . . . RB 21 460.18 495.659 576.655 1 48.98 ? O4' ANP 4704 e 1 
HETATM 17 C C3' ANP . . . RB 21 459.515 495.013 574.458 1 48.98 ? C3' ANP 4704 e 1 
HETATM 18 O O3' ANP . . . RB 21 458.923 496.073 573.716 1 48.98 ? O3' ANP 4704 e 1 
HETATM 19 C C2' ANP . . . RB 21 461.035 495.156 574.541 1 48.98 ? C2' ANP 4704 e 1 
HETATM 20 O O2' ANP . . . RB 21 461.585 495.733 573.364 1 48.98 ? O2' ANP 4704 e 1 
HETATM 21 C C1' ANP . . . RB 21 461.176 496.075 575.749 1 48.98 ? C1' ANP 4704 e 1 
HETATM 22 N N9 ANP . . . RB 21 462.468 496.004 576.423 1 48.98 ? N9 ANP 4704 e 1 
HETATM 23 C C8 ANP . . . RB 21 462.696 495.727 577.745 1 48.98 ? C8 ANP 4704 e 1 
HETATM 24 N N7 ANP . . . RB 21 463.963 495.731 578.082 1 48.98 ? N7 ANP 4704 e 1 
HETATM 25 C C5 ANP . . . RB 21 464.616 496.034 576.897 1 48.98 ? C5 ANP 4704 e 1 
HETATM 26 C C6 ANP . . . RB 21 465.978 496.19 576.579 1 48.98 ? C6 ANP 4704 e 1 
HETATM 27 N N6 ANP . . . RB 21 466.969 496.056 577.464 1 48.98 ? N6 ANP 4704 e 1 
HETATM 28 N N1 ANP . . . RB 21 466.293 496.492 575.299 1 48.98 ? N1 ANP 4704 e 1 
HETATM 29 C C2 ANP . . . RB 21 465.306 496.623 574.409 1 48.98 ? C2 ANP 4704 e 1 
HETATM 30 N N3 ANP . . . RB 21 463.99 496.509 574.594 1 48.98 ? N3 ANP 4704 e 1 
HETATM 31 C C4 ANP . . . RB 21 463.708 496.207 575.868 1 48.98 ? C4 ANP 4704 e 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    174 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#