data_7Z8F # _model_server_result.job_id FnxKDsQ33F83FEQkOF1-PQ _model_server_result.datetime_utc '2025-09-07 05:21:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FB","auth_seq_id":800}' # _entry.id 7Z8F # _exptl.entry_id 7Z8F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z8F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 43-meric _pdbx_struct_assembly.oligomeric_count 43 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 RA N N ? 17 TA N N ? 17 VA N N ? 17 XA N N ? 17 ZA N N ? 17 CB N N ? 17 DB N N ? 17 FB N N ? 17 HB N N ? 17 OB N N ? 17 TB N N ? 17 YB N N ? 17 DC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 RA O3B ADP . A ADP 800 1_555 SA MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 TA O2B ADP . B ADP 800 1_555 UA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 VA O2B ADP . C ADP 800 1_555 WA MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 XA O2B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 XA O3B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc6 ZA O2B ADP . E ADP 800 1_555 AB MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 BB MG MG . F MG 801 1_555 CB O2B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc8 DB O3B ADP . G ADP 800 1_555 EB MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc9 FB O2B ADP . H ADP 800 1_555 GB MG MG . H MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc10 HB O2B ADP . I ADP 800 1_555 IB MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc11 JB O2G ATP . J ATP 800 1_555 KB MG MG . J MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc12 PB O3G ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc13 PB O1B ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc14 UB O3G ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 UB O1B ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 ZB O3G ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc17 ZB O1B ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 EC O3G ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc19 EC O1B ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7Z8F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code RA 17 ADP A 1 800 800 ADP ADP . SA 18 MG A 1 801 801 MG MG . TA 17 ADP B 1 800 800 ADP ADP . UA 18 MG B 1 801 801 MG MG . VA 17 ADP C 1 800 800 ADP ADP . WA 18 MG C 1 801 801 MG MG . XA 17 ADP D 1 800 800 ADP ADP . YA 18 MG D 1 801 801 MG MG . ZA 17 ADP E 1 800 800 ADP ADP . AB 18 MG E 1 801 801 MG MG . BB 18 MG F 1 801 801 MG MG . CB 17 ADP F 1 802 800 ADP ADP . DB 17 ADP G 1 800 800 ADP ADP . EB 18 MG G 1 801 801 MG MG . FB 17 ADP H 1 800 800 ADP ADP . GB 18 MG H 1 801 801 MG MG . HB 17 ADP I 1 800 800 ADP ADP . IB 18 MG I 1 801 801 MG MG . JB 19 ATP J 1 800 800 ATP ATP . KB 18 MG J 1 801 801 MG MG . LB 20 ZN Y 1 501 501 ZN ZN . MB 20 ZN Y 1 502 502 ZN ZN . NB 20 ZN Y 1 503 503 ZN ZN . OB 17 ADP e 1 4701 4701 ADP ADP . PB 19 ATP e 1 4702 4702 ATP ATP . QB 18 MG e 1 4703 4703 MG MG . RB 21 ANP e 1 4704 5003 ANP ANP . SB 21 ANP e 1 4705 5004 ANP ANP . TB 17 ADP f 1 4701 4701 ADP ADP . UB 19 ATP f 1 4702 4702 ATP ATP . VB 21 ANP f 1 4703 5004 ANP ANP . WB 18 MG f 1 4704 4703 MG MG . XB 21 ANP f 1 4705 5003 ANP ANP . YB 17 ADP m 1 4701 4701 ADP ADP . ZB 19 ATP m 1 4702 4702 ATP ATP . AC 18 MG m 1 4703 4703 MG MG . BC 21 ANP m 1 4704 5003 ANP ANP . CC 21 ANP m 1 4705 5004 ANP ANP . DC 17 ADP n 1 4701 4701 ADP ADP . EC 19 ATP n 1 4702 4702 ATP ATP . FC 18 MG n 1 4703 4703 MG MG . GC 21 ANP n 1 4704 5003 ANP ANP . HC 21 ANP n 1 4705 5004 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . FB 17 672.341 544.48 354.695 1 9.93 ? PB ADP 800 H 1 HETATM 2 O O1B ADP . . . FB 17 673.195 545.619 354.261 1 11.6 ? O1B ADP 800 H 1 HETATM 3 O O2B ADP . . . FB 17 670.872 544.77 354.607 1 8.84 ? O2B ADP 800 H 1 HETATM 4 O O3B ADP . . . FB 17 672.748 543.939 356.039 1 11.98 ? O3B ADP 800 H 1 HETATM 5 P PA ADP . . . FB 17 672.156 543.19 352.096 1 9.96 ? PA ADP 800 H 1 HETATM 6 O O1A ADP . . . FB 17 672.179 544.529 351.456 1 11.01 ? O1A ADP 800 H 1 HETATM 7 O O2A ADP . . . FB 17 670.904 542.387 352.018 1 10.78 ? O2A ADP 800 H 1 HETATM 8 O O3A ADP . . . FB 17 672.614 543.332 353.616 1 9.12 ? O3A ADP 800 H 1 HETATM 9 O O5' ADP . . . FB 17 673.369 542.331 351.531 1 10.92 ? O5' ADP 800 H 1 HETATM 10 C C5' ADP . . . FB 17 674.684 542.931 351.433 1 9.4 ? C5' ADP 800 H 1 HETATM 11 C C4' ADP . . . FB 17 675.706 541.824 351.407 1 11.7 ? C4' ADP 800 H 1 HETATM 12 O O4' ADP . . . FB 17 675.281 540.834 350.438 1 10.9 ? O4' ADP 800 H 1 HETATM 13 C C3' ADP . . . FB 17 677.133 542.211 350.993 1 11.62 ? C3' ADP 800 H 1 HETATM 14 O O3' ADP . . . FB 17 678.061 541.466 351.768 1 11.6 ? O3' ADP 800 H 1 HETATM 15 C C2' ADP . . . FB 17 677.21 541.73 349.543 1 11.01 ? C2' ADP 800 H 1 HETATM 16 O O2' ADP . . . FB 17 678.518 541.44 349.099 1 12.15 ? O2' ADP 800 H 1 HETATM 17 C C1' ADP . . . FB 17 676.363 540.472 349.618 1 10.55 ? C1' ADP 800 H 1 HETATM 18 N N9 ADP . . . FB 17 675.831 540.062 348.324 1 10.56 ? N9 ADP 800 H 1 HETATM 19 C C8 ADP . . . FB 17 674.826 540.669 347.616 1 9.95 ? C8 ADP 800 H 1 HETATM 20 N N7 ADP . . . FB 17 674.555 540.07 346.485 1 11.89 ? N7 ADP 800 H 1 HETATM 21 C C5 ADP . . . FB 17 675.414 538.981 346.459 1 12.31 ? C5 ADP 800 H 1 HETATM 22 C C6 ADP . . . FB 17 675.6 537.948 345.524 1 13.61 ? C6 ADP 800 H 1 HETATM 23 N N6 ADP . . . FB 17 674.9 537.834 344.399 1 12.87 ? N6 ADP 800 H 1 HETATM 24 N N1 ADP . . . FB 17 676.532 537.011 345.808 1 13.98 ? N1 ADP 800 H 1 HETATM 25 C C2 ADP . . . FB 17 677.225 537.128 346.946 1 16.8 ? C2 ADP 800 H 1 HETATM 26 N N3 ADP . . . FB 17 677.147 538.059 347.89 1 13.37 ? N3 ADP 800 H 1 HETATM 27 C C4 ADP . . . FB 17 676.206 538.965 347.588 1 11.66 ? C4 ADP 800 H 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 261 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #