data_7Z8F
#
_model_server_result.job_id            XsLE1Tq73qhDfhxjw8ZhnA 
_model_server_result.datetime_utc      '2025-09-04 21:40:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JB","auth_seq_id":800}' 
#
_entry.id    7Z8F 
#
_exptl.entry_id    7Z8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          19 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    43-meric 
_pdbx_struct_assembly.oligomeric_count      43 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 19 JB N N 
? 19 PB N N 
? 19 UB N N 
? 19 ZB N N 
? 19 EC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 RA O3B ADP . A ADP 800 1_555 SA MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc2 TA O2B ADP . B ADP 800 1_555 UA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc3 VA O2B ADP . C ADP 800 1_555 WA MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc4 XA O2B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc5 XA O3B ADP . D ADP 800 1_555 YA MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc6 ZA O2B ADP . E ADP 800 1_555 AB MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc7 BB MG MG . F MG 801 1_555 CB O2B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc8 DB O3B ADP . G ADP 800 1_555 EB MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc9 FB O2B ADP . H ADP 800 1_555 GB MG MG . H MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc10 HB O2B ADP . I ADP 800 1_555 IB MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc11 JB O2G ATP . J ATP 800 1_555 KB MG MG . J MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc12 PB O3G ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc13 PB O1B ATP . e ATP 4702 1_555 QB MG MG . e MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc14 UB O3G ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc15 UB O1B ATP . f ATP 4702 1_555 WB MG MG . f MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc16 ZB O3G ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc17 ZB O1B ATP . m ATP 4702 1_555 AC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc18 EC O3G ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc19 EC O1B ATP . n ATP 4702 1_555 FC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 164 n n 
PG O2G ATP sing 165 n n 
PG O3G ATP sing 166 n n 
PG O3B ATP sing 167 n n 
O2G HOG2 ATP sing 168 n n 
O3G HOG3 ATP sing 169 n n 
PB O1B ATP doub 170 n n 
PB O2B ATP sing 171 n n 
PB O3B ATP sing 172 n n 
PB O3A ATP sing 173 n n 
O2B HOB2 ATP sing 174 n n 
PA O1A ATP doub 175 n n 
PA O2A ATP sing 176 n n 
PA O3A ATP sing 177 n n 
PA O5' ATP sing 178 n n 
O2A HOA2 ATP sing 179 n n 
O5' C5' ATP sing 180 n n 
C5' C4' ATP sing 181 n n 
C5' "H5'1" ATP sing 182 n n 
C5' "H5'2" ATP sing 183 n n 
C4' O4' ATP sing 184 n n 
C4' C3' ATP sing 185 n n 
C4' H4' ATP sing 186 n n 
O4' C1' ATP sing 187 n n 
C3' O3' ATP sing 188 n n 
C3' C2' ATP sing 189 n n 
C3' H3' ATP sing 190 n n 
O3' HO3' ATP sing 191 n n 
C2' O2' ATP sing 192 n n 
C2' C1' ATP sing 193 n n 
C2' H2' ATP sing 194 n n 
O2' HO2' ATP sing 195 n n 
C1' N9 ATP sing 196 n n 
C1' H1' ATP sing 197 n n 
N9 C8 ATP sing 198 n y 
N9 C4 ATP sing 199 n y 
C8 N7 ATP doub 200 n y 
C8 H8 ATP sing 201 n n 
N7 C5 ATP sing 202 n y 
C5 C6 ATP sing 203 n y 
C5 C4 ATP doub 204 n y 
C6 N6 ATP sing 205 n n 
C6 N1 ATP doub 206 n y 
N6 HN61 ATP sing 207 n n 
N6 HN62 ATP sing 208 n n 
N1 C2 ATP sing 209 n y 
C2 N3 ATP doub 210 n y 
C2 H2 ATP sing 211 n n 
N3 C4 ATP sing 212 n y 
#
_atom_sites.entry_id                     7Z8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
RA 17 ADP A 1 800 800 ADP ADP . 
SA 18 MG A 1 801 801 MG MG . 
TA 17 ADP B 1 800 800 ADP ADP . 
UA 18 MG B 1 801 801 MG MG . 
VA 17 ADP C 1 800 800 ADP ADP . 
WA 18 MG C 1 801 801 MG MG . 
XA 17 ADP D 1 800 800 ADP ADP . 
YA 18 MG D 1 801 801 MG MG . 
ZA 17 ADP E 1 800 800 ADP ADP . 
AB 18 MG E 1 801 801 MG MG . 
BB 18 MG F 1 801 801 MG MG . 
CB 17 ADP F 1 802 800 ADP ADP . 
DB 17 ADP G 1 800 800 ADP ADP . 
EB 18 MG G 1 801 801 MG MG . 
FB 17 ADP H 1 800 800 ADP ADP . 
GB 18 MG H 1 801 801 MG MG . 
HB 17 ADP I 1 800 800 ADP ADP . 
IB 18 MG I 1 801 801 MG MG . 
JB 19 ATP J 1 800 800 ATP ATP . 
KB 18 MG J 1 801 801 MG MG . 
LB 20 ZN Y 1 501 501 ZN ZN . 
MB 20 ZN Y 1 502 502 ZN ZN . 
NB 20 ZN Y 1 503 503 ZN ZN . 
OB 17 ADP e 1 4701 4701 ADP ADP . 
PB 19 ATP e 1 4702 4702 ATP ATP . 
QB 18 MG e 1 4703 4703 MG MG . 
RB 21 ANP e 1 4704 5003 ANP ANP . 
SB 21 ANP e 1 4705 5004 ANP ANP . 
TB 17 ADP f 1 4701 4701 ADP ADP . 
UB 19 ATP f 1 4702 4702 ATP ATP . 
VB 21 ANP f 1 4703 5004 ANP ANP . 
WB 18 MG f 1 4704 4703 MG MG . 
XB 21 ANP f 1 4705 5003 ANP ANP . 
YB 17 ADP m 1 4701 4701 ADP ADP . 
ZB 19 ATP m 1 4702 4702 ATP ATP . 
AC 18 MG m 1 4703 4703 MG MG . 
BC 21 ANP m 1 4704 5003 ANP ANP . 
CC 21 ANP m 1 4705 5004 ANP ANP . 
DC 17 ADP n 1 4701 4701 ADP ADP . 
EC 19 ATP n 1 4702 4702 ATP ATP . 
FC 18 MG n 1 4703 4703 MG MG . 
GC 21 ANP n 1 4704 5003 ANP ANP . 
HC 21 ANP n 1 4705 5004 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . JB 19 709.869 576.595 337.183 1 15.49 ? PG ATP 800 J 1 
HETATM 2 O O1G ATP . . . JB 19 711.054 575.682 337.32 1 16.15 ? O1G ATP 800 J 1 
HETATM 3 O O2G ATP . . . JB 19 708.688 575.941 336.52 1 13.71 ? O2G ATP 800 J 1 
HETATM 4 O O3G ATP . . . JB 19 709.501 577.26 338.477 1 13.88 ? O3G ATP 800 J 1 
HETATM 5 P PB ATP . . . JB 19 709.61 578.58 335.022 1 14.86 ? PB ATP 800 J 1 
HETATM 6 O O1B ATP . . . JB 19 708.181 578.784 335.366 1 12.74 ? O1B ATP 800 J 1 
HETATM 7 O O2B ATP . . . JB 19 710.451 579.742 334.662 1 13.71 ? O2B ATP 800 J 1 
HETATM 8 O O3B ATP . . . JB 19 710.336 577.776 336.199 1 14.39 ? O3B ATP 800 J 1 
HETATM 9 P PA ATP . . . JB 19 708.862 577.363 332.492 1 15.32 ? PA ATP 800 J 1 
HETATM 10 O O1A ATP . . . JB 19 707.804 576.331 332.696 1 13.86 ? O1A ATP 800 J 1 
HETATM 11 O O2A ATP . . . JB 19 708.469 578.721 332.031 1 15.33 ? O2A ATP 800 J 1 
HETATM 12 O O3A ATP . . . JB 19 709.704 577.521 333.835 1 13.71 ? O3A ATP 800 J 1 
HETATM 13 O O5' ATP . . . JB 19 709.99 576.783 331.529 1 15.17 ? O5' ATP 800 J 1 
HETATM 14 C C5' ATP . . . JB 19 711.121 577.628 331.201 1 13.53 ? C5' ATP 800 J 1 
HETATM 15 C C4' ATP . . . JB 19 711.797 577.066 329.975 1 13.79 ? C4' ATP 800 J 1 
HETATM 16 O O4' ATP . . . JB 19 710.852 577.087 328.878 1 15.18 ? O4' ATP 800 J 1 
HETATM 17 C C3' ATP . . . JB 19 713.04 577.808 329.459 1 15.2 ? C3' ATP 800 J 1 
HETATM 18 O O3' ATP . . . JB 19 714.146 576.917 329.425 1 15.1 ? O3' ATP 800 J 1 
HETATM 19 C C2' ATP . . . JB 19 712.653 578.262 328.044 1 13.73 ? C2' ATP 800 J 1 
HETATM 20 O O2' ATP . . . JB 19 713.712 578.225 327.113 1 13.95 ? O2' ATP 800 J 1 
HETATM 21 C C1' ATP . . . JB 19 711.55 577.279 327.676 1 14.25 ? C1' ATP 800 J 1 
HETATM 22 N N9 ATP . . . JB 19 710.601 577.812 326.708 1 14.55 ? N9 ATP 800 J 1 
HETATM 23 C C8 ATP . . . JB 19 709.628 578.759 326.922 1 15.61 ? C8 ATP 800 J 1 
HETATM 24 N N7 ATP . . . JB 19 708.923 579.009 325.844 1 16.92 ? N7 ATP 800 J 1 
HETATM 25 C C5 ATP . . . JB 19 709.447 578.162 324.877 1 16.64 ? C5 ATP 800 J 1 
HETATM 26 C C6 ATP . . . JB 19 709.123 577.946 323.526 1 16.81 ? C6 ATP 800 J 1 
HETATM 27 N N6 ATP . . . JB 19 708.148 578.588 322.89 1 17.93 ? N6 ATP 800 J 1 
HETATM 28 N N1 ATP . . . JB 19 709.845 577.018 322.855 1 17.61 ? N1 ATP 800 J 1 
HETATM 29 C C2 ATP . . . JB 19 710.821 576.371 323.505 1 17.51 ? C2 ATP 800 J 1 
HETATM 30 N N3 ATP . . . JB 19 711.221 576.5 324.767 1 15.35 ? N3 ATP 800 J 1 
HETATM 31 C C4 ATP . . . JB 19 710.481 577.419 325.404 1 14.09 ? C4 ATP 800 J 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    223 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#