data_7Z8H # _model_server_result.job_id A7OJUaCId-7p4ajo8r3iqQ _model_server_result.datetime_utc '2025-09-14 03:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4702}' # _entry.id 7Z8H # _exptl.entry_id 7Z8H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z8H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 2231 A SER 2231 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc2 A OE1 GLU 2344 A GLU 2344 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 C O3G ATP . A ATP 4702 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 C O1B ATP . A ATP 4702 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 164 n n PG O2G ATP sing 165 n n PG O3G ATP sing 166 n n PG O3B ATP sing 167 n n O2G HOG2 ATP sing 168 n n O3G HOG3 ATP sing 169 n n PB O1B ATP doub 170 n n PB O2B ATP sing 171 n n PB O3B ATP sing 172 n n PB O3A ATP sing 173 n n O2B HOB2 ATP sing 174 n n PA O1A ATP doub 175 n n PA O2A ATP sing 176 n n PA O3A ATP sing 177 n n PA O5' ATP sing 178 n n O2A HOA2 ATP sing 179 n n O5' C5' ATP sing 180 n n C5' C4' ATP sing 181 n n C5' "H5'1" ATP sing 182 n n C5' "H5'2" ATP sing 183 n n C4' O4' ATP sing 184 n n C4' C3' ATP sing 185 n n C4' H4' ATP sing 186 n n O4' C1' ATP sing 187 n n C3' O3' ATP sing 188 n n C3' C2' ATP sing 189 n n C3' H3' ATP sing 190 n n O3' HO3' ATP sing 191 n n C2' O2' ATP sing 192 n n C2' C1' ATP sing 193 n n C2' H2' ATP sing 194 n n O2' HO2' ATP sing 195 n n C1' N9 ATP sing 196 n n C1' H1' ATP sing 197 n n N9 C8 ATP sing 198 n y N9 C4 ATP sing 199 n y C8 N7 ATP doub 200 n y C8 H8 ATP sing 201 n n N7 C5 ATP sing 202 n y C5 C6 ATP sing 203 n y C5 C4 ATP doub 204 n y C6 N6 ATP sing 205 n n C6 N1 ATP doub 206 n y N6 HN61 ATP sing 207 n n N6 HN62 ATP sing 208 n n N1 C2 ATP sing 209 n y C2 N3 ATP doub 210 n y C2 H2 ATP sing 211 n n N3 C4 ATP sing 212 n y # _atom_sites.entry_id 7Z8H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 4701 4701 ADP ADP . C 3 ATP A 1 4702 4702 ATP ATP . D 4 ANP A 1 4703 5003 ANP ANP . E 5 MG A 1 4704 4703 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 448.32 408.243 395.57 1 57.2 ? PG ATP 4702 A 1 HETATM 2 O O1G ATP . . . C 3 447.803 408.667 396.896 1 34.09 ? O1G ATP 4702 A 1 HETATM 3 O O2G ATP . . . C 3 449.015 409.355 394.794 1 46.64 ? O2G ATP 4702 A 1 HETATM 4 O O3G ATP . . . C 3 447.265 407.591 394.672 1 37.45 ? O3G ATP 4702 A 1 HETATM 5 P PB ATP . . . C 3 449.546 405.562 395.765 1 25.63 ? PB ATP 4702 A 1 HETATM 6 O O1B ATP . . . C 3 448.49 404.932 394.953 1 43.91 ? O1B ATP 4702 A 1 HETATM 7 O O2B ATP . . . C 3 449.639 405.138 397.227 1 36.41 ? O2B ATP 4702 A 1 HETATM 8 O O3B ATP . . . C 3 449.423 407.127 395.747 1 24.43 ? O3B ATP 4702 A 1 HETATM 9 P PA ATP . . . C 3 451.579 404.661 393.844 1 20.65 ? PA ATP 4702 A 1 HETATM 10 O O1A ATP . . . C 3 451.005 403.318 393.634 1 35.49 ? O1A ATP 4702 A 1 HETATM 11 O O2A ATP . . . C 3 451.383 405.632 392.685 1 31.55 ? O2A ATP 4702 A 1 HETATM 12 O O3A ATP . . . C 3 450.985 405.348 395.126 1 19.29 ? O3A ATP 4702 A 1 HETATM 13 O O5' ATP . . . C 3 453.113 404.641 394.207 1 32.04 ? O5' ATP 4702 A 1 HETATM 14 C C5' ATP . . . C 3 453.779 405.832 394.673 1 30.03 ? C5' ATP 4702 A 1 HETATM 15 C C4' ATP . . . C 3 455.182 405.952 394.129 1 28.92 ? C4' ATP 4702 A 1 HETATM 16 O O4' ATP . . . C 3 456.015 405.11 394.949 1 20.08 ? O4' ATP 4702 A 1 HETATM 17 C C3' ATP . . . C 3 455.341 405.333 392.748 1 34.85 ? C3' ATP 4702 A 1 HETATM 18 O O3' ATP . . . C 3 455.162 406.403 391.831 1 40.89 ? O3' ATP 4702 A 1 HETATM 19 C C2' ATP . . . C 3 456.831 405.015 392.739 1 38.91 ? C2' ATP 4702 A 1 HETATM 20 O O2' ATP . . . C 3 457.497 406.269 392.728 1 37.05 ? O2' ATP 4702 A 1 HETATM 21 C C1' ATP . . . C 3 457.027 404.499 394.167 1 34.26 ? C1' ATP 4702 A 1 HETATM 22 N N9 ATP . . . C 3 456.807 403.061 394.26 1 26.27 ? N9 ATP 4702 A 1 HETATM 23 C C8 ATP . . . C 3 455.606 402.401 394.289 1 27.23 ? C8 ATP 4702 A 1 HETATM 24 N N7 ATP . . . C 3 455.714 401.098 394.386 1 26.44 ? N7 ATP 4702 A 1 HETATM 25 C C5 ATP . . . C 3 457.083 400.885 394.43 1 22.62 ? C5 ATP 4702 A 1 HETATM 26 C C6 ATP . . . C 3 457.861 399.717 394.529 1 37.46 ? C6 ATP 4702 A 1 HETATM 27 N N6 ATP . . . C 3 457.348 398.485 394.608 1 39.97 ? N6 ATP 4702 A 1 HETATM 28 N N1 ATP . . . C 3 459.204 399.855 394.547 1 36.35 ? N1 ATP 4702 A 1 HETATM 29 C C2 ATP . . . C 3 459.725 401.081 394.464 1 26.57 ? C2 ATP 4702 A 1 HETATM 30 N N3 ATP . . . C 3 459.094 402.252 394.37 1 24.07 ? N3 ATP 4702 A 1 HETATM 31 C C4 ATP . . . C 3 457.769 402.086 394.353 1 20.03 ? C4 ATP 4702 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #