data_7Z8H # _model_server_result.job_id D94Z9hGmR-LyDd_TLk0qXQ _model_server_result.datetime_utc '2025-09-12 22:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4703}' # _entry.id 7Z8H # _exptl.entry_id 7Z8H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z8H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 2231 A SER 2231 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc2 A OE1 GLU 2344 A GLU 2344 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 C O3G ATP . A ATP 4702 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 C O1B ATP . A ATP 4702 1_555 E MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 7Z8H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 4701 4701 ADP ADP . C 3 ATP A 1 4702 4702 ATP ATP . D 4 ANP A 1 4703 5003 ANP ANP . E 5 MG A 1 4704 4703 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 446.613 437.178 396.971 1 40.3 ? PG ANP 4703 A 1 HETATM 2 O O1G ANP . . . D 4 445.395 437.769 397.604 1 33 ? O1G ANP 4703 A 1 HETATM 3 O O2G ANP . . . D 4 447.018 435.876 397.758 1 44.03 ? O2G ANP 4703 A 1 HETATM 4 O O3G ANP . . . D 4 446.306 436.813 395.463 1 41.9 ? O3G ANP 4703 A 1 HETATM 5 P PB ANP . . . D 4 448.677 438.429 395.591 1 24.91 ? PB ANP 4703 A 1 HETATM 6 O O1B ANP . . . D 4 447.987 437.597 394.562 1 29.72 ? O1B ANP 4703 A 1 HETATM 7 O O2B ANP . . . D 4 450.142 437.944 395.761 1 32.94 ? O2B ANP 4703 A 1 HETATM 8 N N3B ANP . . . D 4 447.876 438.297 397.053 1 37.46 ? N3B ANP 4703 A 1 HETATM 9 P PA ANP . . . D 4 449.709 440.402 394.045 1 38.69 ? PA ANP 4703 A 1 HETATM 10 O O1A ANP . . . D 4 449.028 441.151 392.967 1 42.27 ? O1A ANP 4703 A 1 HETATM 11 O O2A ANP . . . D 4 450.465 439.154 393.588 1 48.21 ? O2A ANP 4703 A 1 HETATM 12 O O3A ANP . . . D 4 448.681 439.921 395.146 1 40.36 ? O3A ANP 4703 A 1 HETATM 13 O O5' ANP . . . D 4 450.674 441.412 394.776 1 43.8 ? O5' ANP 4703 A 1 HETATM 14 C C5' ANP . . . D 4 450.244 442.137 395.94 1 43.3 ? C5' ANP 4703 A 1 HETATM 15 C C4' ANP . . . D 4 451.033 443.418 396.042 1 38.47 ? C4' ANP 4703 A 1 HETATM 16 O O4' ANP . . . D 4 452.406 443.115 396.364 1 34.61 ? O4' ANP 4703 A 1 HETATM 17 C C3' ANP . . . D 4 451.046 444.28 394.777 1 37.57 ? C3' ANP 4703 A 1 HETATM 18 O O3' ANP . . . D 4 450.565 445.592 395.043 1 55.4 ? O3' ANP 4703 A 1 HETATM 19 C C2' ANP . . . D 4 452.517 444.28 394.342 1 32.44 ? C2' ANP 4703 A 1 HETATM 20 O O2' ANP . . . D 4 452.903 445.543 393.81 1 42.08 ? O2' ANP 4703 A 1 HETATM 21 C C1' ANP . . . D 4 453.249 443.984 395.647 1 31.18 ? C1' ANP 4703 A 1 HETATM 22 N N9 ANP . . . D 4 454.541 443.326 395.476 1 42.27 ? N9 ANP 4703 A 1 HETATM 23 C C8 ANP . . . D 4 454.988 442.214 396.14 1 42.58 ? C8 ANP 4703 A 1 HETATM 24 N N7 ANP . . . D 4 456.192 441.831 395.79 1 41.29 ? N7 ANP 4703 A 1 HETATM 25 C C5 ANP . . . D 4 456.564 442.756 394.826 1 38.21 ? C5 ANP 4703 A 1 HETATM 26 C C6 ANP . . . D 4 457.734 442.907 394.058 1 38.88 ? C6 ANP 4703 A 1 HETATM 27 N N6 ANP . . . D 4 458.788 442.093 394.142 1 40.11 ? N6 ANP 4703 A 1 HETATM 28 N N1 ANP . . . D 4 457.781 443.936 393.182 1 37.97 ? N1 ANP 4703 A 1 HETATM 29 C C2 ANP . . . D 4 456.727 444.751 393.089 1 40.53 ? C2 ANP 4703 A 1 HETATM 30 N N3 ANP . . . D 4 455.577 444.712 393.766 1 44.3 ? N3 ANP 4703 A 1 HETATM 31 C C4 ANP . . . D 4 455.555 443.681 394.621 1 40.65 ? C4 ANP 4703 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #