data_7Z8M # _model_server_result.job_id eUTNA6g4WoziQImXfd8Ptg _model_server_result.datetime_utc '2024-11-09 02:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":800}' # _entry.id 7Z8M # _exptl.entry_id 7Z8M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z8M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 30 Y CYS 30 1_555 J ZN ZN . Y ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 D SG CYS 33 Y CYS 33 1_555 J ZN ZN . Y ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 D SG CYS 51 Y CYS 51 1_555 K ZN ZN . Y ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 D SG CYS 54 Y CYS 54 1_555 K ZN ZN . Y ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 D SG CYS 70 Y CYS 70 1_555 K ZN ZN . Y ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 D SG CYS 73 Y CYS 73 1_555 K ZN ZN . Y ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc7 D SG CYS 76 Y CYS 76 1_555 L ZN ZN . Y ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 D SG CYS 79 Y CYS 79 1_555 L ZN ZN . Y ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc9 D SG CYS 111 Y CYS 111 1_555 L ZN ZN . Y ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 D SG CYS 114 Y CYS 114 1_555 L ZN ZN . Y ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 D SG CYS 284 Y CYS 284 1_555 J ZN ZN . Y ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 D SG CYS 287 Y CYS 287 1_555 J ZN ZN . Y ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 M O2G ATP . J ATP 800 1_555 N MG MG . J MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc14 O O3B ADP . G ADP 800 1_555 P MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc15 Q O1B ADP . H ADP 800 1_555 R MG MG . H MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc16 S O2B ADP . I ADP 800 1_555 T MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc17 S O3B ADP . I ADP 800 1_555 T MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7Z8M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 9 ZN Y 1 501 501 ZN ZN . K 9 ZN Y 1 502 502 ZN ZN . L 9 ZN Y 1 503 503 ZN ZN . M 10 ATP J 1 800 800 ATP ATP . N 11 MG J 1 801 801 MG MG . O 12 ADP G 1 800 800 ADP ADP . P 11 MG G 1 801 801 MG MG . Q 12 ADP H 1 800 800 ADP ADP . R 11 MG H 1 801 801 MG MG . S 12 ADP I 1 800 800 ADP ADP . T 11 MG I 1 801 801 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 10 710.091 576.499 337.26 1 44.63 ? PG ATP 800 J 1 HETATM 2 O O1G ATP . . . M 10 711.115 575.422 337.329 1 43.64 ? O1G ATP 800 J 1 HETATM 3 O O2G ATP . . . M 10 708.677 575.991 336.998 1 40.59 ? O2G ATP 800 J 1 HETATM 4 O O3G ATP . . . M 10 710.069 577.406 338.483 1 47.55 ? O3G ATP 800 J 1 HETATM 5 P PB ATP . . . M 10 709.621 578.41 335.031 1 35.13 ? PB ATP 800 J 1 HETATM 6 O O1B ATP . . . M 10 708.237 578.66 335.468 1 35.73 ? O1B ATP 800 J 1 HETATM 7 O O2B ATP . . . M 10 710.485 579.645 334.805 1 37.59 ? O2B ATP 800 J 1 HETATM 8 O O3B ATP . . . M 10 710.392 577.476 336.044 1 36.22 ? O3B ATP 800 J 1 HETATM 9 P PA ATP . . . M 10 708.935 577.535 332.301 1 36.96 ? PA ATP 800 J 1 HETATM 10 O O1A ATP . . . M 10 707.677 576.764 332.354 1 42.1 ? O1A ATP 800 J 1 HETATM 11 O O2A ATP . . . M 10 708.797 578.987 331.857 1 35.82 ? O2A ATP 800 J 1 HETATM 12 O O3A ATP . . . M 10 709.672 577.544 333.698 1 35.2 ? O3A ATP 800 J 1 HETATM 13 O O5' ATP . . . M 10 709.985 576.823 331.364 1 36.47 ? O5' ATP 800 J 1 HETATM 14 C C5' ATP . . . M 10 711.235 577.456 331.024 1 37.11 ? C5' ATP 800 J 1 HETATM 15 C C4' ATP . . . M 10 711.976 576.561 330.067 1 36.08 ? C4' ATP 800 J 1 HETATM 16 O O4' ATP . . . M 10 711.189 576.514 328.856 1 35.88 ? O4' ATP 800 J 1 HETATM 17 C C3' ATP . . . M 10 713.293 577.192 329.631 1 35.74 ? C3' ATP 800 J 1 HETATM 18 O O3' ATP . . . M 10 714.028 576.152 329.002 1 40.8 ? O3' ATP 800 J 1 HETATM 19 C C2' ATP . . . M 10 712.844 578.115 328.505 1 34.11 ? C2' ATP 800 J 1 HETATM 20 O O2' ATP . . . M 10 713.929 578.18 327.592 1 40.12 ? O2' ATP 800 J 1 HETATM 21 C C1' ATP . . . M 10 711.841 577.202 327.808 1 33.24 ? C1' ATP 800 J 1 HETATM 22 N N9 ATP . . . M 10 710.812 577.944 327.086 1 33.83 ? N9 ATP 800 J 1 HETATM 23 C C8 ATP . . . M 10 710.088 579.022 327.526 1 36.06 ? C8 ATP 800 J 1 HETATM 24 N N7 ATP . . . M 10 709.226 579.481 326.653 1 34.41 ? N7 ATP 800 J 1 HETATM 25 C C5 ATP . . . M 10 709.386 578.641 325.562 1 33.63 ? C5 ATP 800 J 1 HETATM 26 C C6 ATP . . . M 10 708.762 578.591 324.301 1 35.73 ? C6 ATP 800 J 1 HETATM 27 N N6 ATP . . . M 10 707.808 579.441 323.91 1 37.4 ? N6 ATP 800 J 1 HETATM 28 N N1 ATP . . . M 10 709.156 577.624 323.443 1 36.37 ? N1 ATP 800 J 1 HETATM 29 C C2 ATP . . . M 10 710.106 576.77 323.828 1 34.07 ? C2 ATP 800 J 1 HETATM 30 N N3 ATP . . . M 10 710.766 576.721 324.987 1 32.92 ? N3 ATP 800 J 1 HETATM 31 C C4 ATP . . . M 10 710.358 577.687 325.816 1 33.82 ? C4 ATP 800 J 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #