data_7Z8P # _model_server_result.job_id AZ2j3jmoL-QXd0vKazfxrA _model_server_result.datetime_utc '2024-11-25 12:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":604}' # _entry.id 7Z8P # _exptl.entry_id 7Z8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z8P _cell.length_a 80.08 _cell.length_b 80.08 _cell.length_c 114.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Z8P _atom_sites.fract_transf_matrix[1][1] 0.012488 _atom_sites.fract_transf_matrix[1][2] 0.00721 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 1 SO4 SO4 . D 2 SO4 A 1 602 2 SO4 SO4 . E 2 SO4 A 1 603 4 SO4 SO4 . F 3 IFZ A 1 604 9 IFZ LIG . G 2 SO4 B 1 601 3 SO4 SO4 . H 3 IFZ B 1 602 5 IFZ LIG . I 4 GOL B 1 603 6 GOL GOL . J 4 GOL B 1 604 7 GOL GOL . K 4 GOL B 1 605 8 GOL GOL . L 5 HOH A 1 701 77 HOH HOH . L 5 HOH A 2 702 43 HOH HOH . L 5 HOH A 3 703 80 HOH HOH . L 5 HOH A 4 704 54 HOH HOH . L 5 HOH A 5 705 62 HOH HOH . L 5 HOH A 6 706 41 HOH HOH . L 5 HOH A 7 707 19 HOH HOH . L 5 HOH A 8 708 6 HOH HOH . L 5 HOH A 9 709 15 HOH HOH . L 5 HOH A 10 710 22 HOH HOH . L 5 HOH A 11 711 27 HOH HOH . L 5 HOH A 12 712 33 HOH HOH . L 5 HOH A 13 713 67 HOH HOH . L 5 HOH A 14 714 10 HOH HOH . L 5 HOH A 15 715 28 HOH HOH . L 5 HOH A 16 716 60 HOH HOH . L 5 HOH A 17 717 7 HOH HOH . L 5 HOH A 18 718 23 HOH HOH . L 5 HOH A 19 719 1 HOH HOH . L 5 HOH A 20 720 40 HOH HOH . L 5 HOH A 21 721 36 HOH HOH . L 5 HOH A 22 722 37 HOH HOH . L 5 HOH A 23 723 79 HOH HOH . L 5 HOH A 24 724 49 HOH HOH . L 5 HOH A 25 725 83 HOH HOH . L 5 HOH A 26 726 31 HOH HOH . L 5 HOH A 27 727 52 HOH HOH . L 5 HOH A 28 728 75 HOH HOH . L 5 HOH A 29 729 50 HOH HOH . L 5 HOH A 30 730 76 HOH HOH . L 5 HOH A 31 731 4 HOH HOH . L 5 HOH A 32 732 29 HOH HOH . L 5 HOH A 33 733 16 HOH HOH . L 5 HOH A 34 734 32 HOH HOH . L 5 HOH A 35 735 81 HOH HOH . L 5 HOH A 36 736 84 HOH HOH . L 5 HOH A 37 737 38 HOH HOH . L 5 HOH A 38 738 44 HOH HOH . L 5 HOH A 39 739 39 HOH HOH . L 5 HOH A 40 740 21 HOH HOH . L 5 HOH A 41 741 74 HOH HOH . M 5 HOH B 1 701 68 HOH HOH . M 5 HOH B 2 702 65 HOH HOH . M 5 HOH B 3 703 89 HOH HOH . M 5 HOH B 4 704 34 HOH HOH . M 5 HOH B 5 705 82 HOH HOH . M 5 HOH B 6 706 47 HOH HOH . M 5 HOH B 7 707 25 HOH HOH . M 5 HOH B 8 708 17 HOH HOH . M 5 HOH B 9 709 72 HOH HOH . M 5 HOH B 10 710 3 HOH HOH . M 5 HOH B 11 711 48 HOH HOH . M 5 HOH B 12 712 85 HOH HOH . M 5 HOH B 13 713 12 HOH HOH . M 5 HOH B 14 714 45 HOH HOH . M 5 HOH B 15 715 26 HOH HOH . M 5 HOH B 16 716 73 HOH HOH . M 5 HOH B 17 717 14 HOH HOH . M 5 HOH B 18 718 35 HOH HOH . M 5 HOH B 19 719 11 HOH HOH . M 5 HOH B 20 720 53 HOH HOH . M 5 HOH B 21 721 59 HOH HOH . M 5 HOH B 22 722 18 HOH HOH . M 5 HOH B 23 723 70 HOH HOH . M 5 HOH B 24 724 71 HOH HOH . M 5 HOH B 25 725 9 HOH HOH . M 5 HOH B 26 726 57 HOH HOH . M 5 HOH B 27 727 5 HOH HOH . M 5 HOH B 28 728 30 HOH HOH . M 5 HOH B 29 729 56 HOH HOH . M 5 HOH B 30 730 69 HOH HOH . M 5 HOH B 31 731 46 HOH HOH . M 5 HOH B 32 732 24 HOH HOH . M 5 HOH B 33 733 20 HOH HOH . M 5 HOH B 34 734 51 HOH HOH . M 5 HOH B 35 735 58 HOH HOH . M 5 HOH B 36 736 66 HOH HOH . M 5 HOH B 37 737 87 HOH HOH . M 5 HOH B 38 738 61 HOH HOH . M 5 HOH B 39 739 88 HOH HOH . M 5 HOH B 40 740 55 HOH HOH . M 5 HOH B 41 741 63 HOH HOH . M 5 HOH B 42 742 64 HOH HOH . M 5 HOH B 43 743 8 HOH HOH . M 5 HOH B 44 744 86 HOH HOH . M 5 HOH B 45 745 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 22.029 42.267 -1.241 1 41.48 ? C1 GOL 604 B 1 HETATM 2 O O1 GOL . . . J 4 22.655 43.108 -2.171 1 35.54 ? O1 GOL 604 B 1 HETATM 3 C C2 GOL . . . J 4 20.626 41.997 -1.795 1 41.74 ? C2 GOL 604 B 1 HETATM 4 O O2 GOL . . . J 4 20.175 40.723 -1.529 1 50.43 ? O2 GOL 604 B 1 HETATM 5 C C3 GOL . . . J 4 19.722 43.086 -1.217 1 41.3 ? C3 GOL 604 B 1 HETATM 6 O O3 GOL . . . J 4 18.407 42.726 -1.566 1 48.14 ? O3 GOL 604 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #