data_7Z8U # _model_server_result.job_id VT222Zv1Hl2dkPxT_v1GTA _model_server_result.datetime_utc '2025-02-26 16:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7Z8U # _exptl.entry_id 7Z8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.52 _cell.angle_gamma 90 _cell.entry_id 7Z8U _cell.length_a 70.09 _cell.length_b 33.9 _cell.length_c 89.265 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 70.09 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2A PRP . A PRP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc2 B O2B PRP . A PRP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc3 C O1B ATP . A ATP 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 C O1A ATP . A ATP 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7Z8U _atom_sites.fract_transf_matrix[1][1] 0.014267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00343 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRP A 1 301 301 PRP PRP . C 3 ATP A 1 302 401 ATP ATP . D 4 MG A 1 303 1 MG MG . E 5 HOH A 1 401 52 HOH HOH . E 5 HOH A 2 402 28 HOH HOH . E 5 HOH A 3 403 20 HOH HOH . E 5 HOH A 4 404 15 HOH HOH . E 5 HOH A 5 405 10 HOH HOH . E 5 HOH A 6 406 17 HOH HOH . E 5 HOH A 7 407 9 HOH HOH . E 5 HOH A 8 408 51 HOH HOH . E 5 HOH A 9 409 1 HOH HOH . E 5 HOH A 10 410 40 HOH HOH . E 5 HOH A 11 411 12 HOH HOH . E 5 HOH A 12 412 29 HOH HOH . E 5 HOH A 13 413 22 HOH HOH . E 5 HOH A 14 414 2 HOH HOH . E 5 HOH A 15 415 7 HOH HOH . E 5 HOH A 16 416 4 HOH HOH . E 5 HOH A 17 417 43 HOH HOH . E 5 HOH A 18 418 13 HOH HOH . E 5 HOH A 19 419 27 HOH HOH . E 5 HOH A 20 420 6 HOH HOH . E 5 HOH A 21 421 18 HOH HOH . E 5 HOH A 22 422 46 HOH HOH . E 5 HOH A 23 423 34 HOH HOH . E 5 HOH A 24 424 37 HOH HOH . E 5 HOH A 25 425 48 HOH HOH . E 5 HOH A 26 426 14 HOH HOH . E 5 HOH A 27 427 24 HOH HOH . E 5 HOH A 28 428 21 HOH HOH . E 5 HOH A 29 429 47 HOH HOH . E 5 HOH A 30 430 58 HOH HOH . E 5 HOH A 31 431 56 HOH HOH . E 5 HOH A 32 432 55 HOH HOH . E 5 HOH A 33 433 30 HOH HOH . E 5 HOH A 34 434 57 HOH HOH . E 5 HOH A 35 435 39 HOH HOH . E 5 HOH A 36 436 25 HOH HOH . E 5 HOH A 37 437 45 HOH HOH . E 5 HOH A 38 438 35 HOH HOH . E 5 HOH A 39 439 32 HOH HOH . E 5 HOH A 40 440 11 HOH HOH . E 5 HOH A 41 441 23 HOH HOH . E 5 HOH A 42 442 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 31.705 -12.426 -1.161 1 49.93 ? PG ATP 302 A 1 HETATM 2 O O1G ATP . . . C 3 32.247 -13.809 -1.462 1 51.3 ? O1G ATP 302 A 1 HETATM 3 O O2G ATP . . . C 3 31.141 -12.287 0.235 1 55.74 ? O2G ATP 302 A 1 HETATM 4 O O3G ATP . . . C 3 32.676 -11.329 -1.523 1 48.76 ? O3G ATP 302 A 1 HETATM 5 P PB ATP . . . C 3 29.991 -13.083 -3.402 1 46.88 ? PB ATP 302 A 1 HETATM 6 O O1B ATP . . . C 3 30.814 -12.57 -4.546 1 46.16 ? O1B ATP 302 A 1 HETATM 7 O O2B ATP . . . C 3 30.088 -14.517 -2.992 1 45.82 ? O2B ATP 302 A 1 HETATM 8 O O3B ATP . . . C 3 30.407 -12.26 -2.103 1 51.06 ? O3B ATP 302 A 1 HETATM 9 P PA ATP . . . C 3 27.67 -11.219 -3.669 1 40.88 ? PA ATP 302 A 1 HETATM 10 O O1A ATP . . . C 3 28.433 -10.319 -4.599 1 40.94 ? O1A ATP 302 A 1 HETATM 11 O O2A ATP . . . C 3 27.418 -10.756 -2.273 1 43.46 ? O2A ATP 302 A 1 HETATM 12 O O3A ATP . . . C 3 28.452 -12.636 -3.591 1 45.46 ? O3A ATP 302 A 1 HETATM 13 O O5' ATP . . . C 3 26.267 -11.621 -4.338 1 35.35 ? O5' ATP 302 A 1 HETATM 14 C C5' ATP . . . C 3 25.312 -12.511 -3.702 1 31.53 ? C5' ATP 302 A 1 HETATM 15 C C4' ATP . . . C 3 24.381 -13.076 -4.752 1 30.3 ? C4' ATP 302 A 1 HETATM 16 O O4' ATP . . . C 3 23.977 -12.023 -5.673 1 31.02 ? O4' ATP 302 A 1 HETATM 17 C C3' ATP . . . C 3 24.968 -14.146 -5.684 1 28.61 ? C3' ATP 302 A 1 HETATM 18 O O3' ATP . . . C 3 25.065 -15.403 -5.025 1 26.89 ? O3' ATP 302 A 1 HETATM 19 C C2' ATP . . . C 3 23.977 -14.076 -6.855 1 28.55 ? C2' ATP 302 A 1 HETATM 20 O O2' ATP . . . C 3 22.786 -14.796 -6.584 1 27.79 ? O2' ATP 302 A 1 HETATM 21 C C1' ATP . . . C 3 23.732 -12.562 -6.959 1 28.63 ? C1' ATP 302 A 1 HETATM 22 N N9 ATP . . . C 3 24.573 -11.796 -7.916 1 27.41 ? N9 ATP 302 A 1 HETATM 23 C C8 ATP . . . C 3 25.951 -11.849 -8.064 1 26.55 ? C8 ATP 302 A 1 HETATM 24 N N7 ATP . . . C 3 26.401 -11.021 -8.979 1 25.23 ? N7 ATP 302 A 1 HETATM 25 C C5 ATP . . . C 3 25.261 -10.388 -9.464 1 27.3 ? C5 ATP 302 A 1 HETATM 26 C C6 ATP . . . C 3 25.072 -9.387 -10.442 1 25.21 ? C6 ATP 302 A 1 HETATM 27 N N6 ATP . . . C 3 26.075 -8.832 -11.11 1 24.35 ? N6 ATP 302 A 1 HETATM 28 N N1 ATP . . . C 3 23.802 -8.954 -10.668 1 25.14 ? N1 ATP 302 A 1 HETATM 29 C C2 ATP . . . C 3 22.799 -9.506 -9.964 1 25.17 ? C2 ATP 302 A 1 HETATM 30 N N3 ATP . . . C 3 22.858 -10.456 -9.026 1 27.49 ? N3 ATP 302 A 1 HETATM 31 C C4 ATP . . . C 3 24.131 -10.851 -8.81 1 27.72 ? C4 ATP 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 31 #