data_7Z92 # _model_server_result.job_id 4YnqTNr8aKNVf2pz8A1Y7g _model_server_result.datetime_utc '2024-11-14 22:50:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":604}' # _entry.id 7Z92 # _exptl.entry_id 7Z92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 155.155 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-3,6-dimethyl-1H-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z92 _cell.length_a 80.12 _cell.length_b 80.12 _cell.length_c 113.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C6 H9 N3 O2' _chem_comp.formula_weight 155.155 _chem_comp.id IGT _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-3,6-dimethyl-1H-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 IGT sing 152 n n N05 C03 IGT sing 153 n n N05 C06 IGT sing 154 n n O04 C03 IGT doub 155 n n C03 N02 IGT sing 156 n n C06 C08 IGT doub 157 n n C08 N09 IGT sing 158 n n C08 C10 IGT sing 159 n n N02 C01 IGT sing 160 n n N02 C10 IGT sing 161 n n C10 O11 IGT doub 162 n n C01 H1 IGT sing 163 n n C01 H2 IGT sing 164 n n C01 H3 IGT sing 165 n n C07 H4 IGT sing 166 n n C07 H5 IGT sing 167 n n C07 H6 IGT sing 168 n n N09 H8 IGT sing 169 n n N09 H9 IGT sing 170 n n N05 H7 IGT sing 171 n n # _atom_sites.entry_id 7Z92 _atom_sites.fract_transf_matrix[1][1] 0.012481 _atom_sites.fract_transf_matrix[1][2] 0.007206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 1 SO4 SO4 . D 2 SO4 A 1 602 3 SO4 SO4 . E 3 IGT A 1 603 6 IGT LIG . F 2 SO4 B 1 601 2 SO4 SO4 . G 2 SO4 B 1 602 4 SO4 SO4 . H 2 SO4 B 1 603 5 SO4 SO4 . I 3 IGT B 1 604 7 IGT LIG . J 4 HOH A 1 701 32 HOH HOH . J 4 HOH A 2 702 24 HOH HOH . J 4 HOH A 3 703 91 HOH HOH . J 4 HOH A 4 704 63 HOH HOH . J 4 HOH A 5 705 71 HOH HOH . J 4 HOH A 6 706 23 HOH HOH . J 4 HOH A 7 707 84 HOH HOH . J 4 HOH A 8 708 31 HOH HOH . J 4 HOH A 9 709 52 HOH HOH . J 4 HOH A 10 710 96 HOH HOH . J 4 HOH A 11 711 48 HOH HOH . J 4 HOH A 12 712 9 HOH HOH . J 4 HOH A 13 713 7 HOH HOH . J 4 HOH A 14 714 27 HOH HOH . J 4 HOH A 15 715 21 HOH HOH . J 4 HOH A 16 716 97 HOH HOH . J 4 HOH A 17 717 33 HOH HOH . J 4 HOH A 18 718 36 HOH HOH . J 4 HOH A 19 719 20 HOH HOH . J 4 HOH A 20 720 54 HOH HOH . J 4 HOH A 21 721 16 HOH HOH . J 4 HOH A 22 722 46 HOH HOH . J 4 HOH A 23 723 59 HOH HOH . J 4 HOH A 24 724 41 HOH HOH . J 4 HOH A 25 725 81 HOH HOH . J 4 HOH A 26 726 1 HOH HOH . J 4 HOH A 27 727 69 HOH HOH . J 4 HOH A 28 728 57 HOH HOH . J 4 HOH A 29 729 29 HOH HOH . J 4 HOH A 30 730 37 HOH HOH . J 4 HOH A 31 731 28 HOH HOH . J 4 HOH A 32 732 55 HOH HOH . J 4 HOH A 33 733 40 HOH HOH . J 4 HOH A 34 734 68 HOH HOH . J 4 HOH A 35 735 53 HOH HOH . J 4 HOH A 36 736 60 HOH HOH . J 4 HOH A 37 737 79 HOH HOH . J 4 HOH A 38 738 93 HOH HOH . J 4 HOH A 39 739 83 HOH HOH . J 4 HOH A 40 740 76 HOH HOH . J 4 HOH A 41 741 4 HOH HOH . J 4 HOH A 42 742 2 HOH HOH . J 4 HOH A 43 743 80 HOH HOH . J 4 HOH A 44 744 64 HOH HOH . J 4 HOH A 45 745 99 HOH HOH . J 4 HOH A 46 746 66 HOH HOH . J 4 HOH A 47 747 39 HOH HOH . J 4 HOH A 48 748 42 HOH HOH . K 4 HOH B 1 701 90 HOH HOH . K 4 HOH B 2 702 62 HOH HOH . K 4 HOH B 3 703 85 HOH HOH . K 4 HOH B 4 704 72 HOH HOH . K 4 HOH B 5 705 61 HOH HOH . K 4 HOH B 6 706 44 HOH HOH . K 4 HOH B 7 707 45 HOH HOH . K 4 HOH B 8 708 6 HOH HOH . K 4 HOH B 9 709 49 HOH HOH . K 4 HOH B 10 710 10 HOH HOH . K 4 HOH B 11 711 58 HOH HOH . K 4 HOH B 12 712 34 HOH HOH . K 4 HOH B 13 713 18 HOH HOH . K 4 HOH B 14 714 47 HOH HOH . K 4 HOH B 15 715 56 HOH HOH . K 4 HOH B 16 716 14 HOH HOH . K 4 HOH B 17 717 95 HOH HOH . K 4 HOH B 18 718 51 HOH HOH . K 4 HOH B 19 719 30 HOH HOH . K 4 HOH B 20 720 5 HOH HOH . K 4 HOH B 21 721 65 HOH HOH . K 4 HOH B 22 722 78 HOH HOH . K 4 HOH B 23 723 13 HOH HOH . K 4 HOH B 24 724 11 HOH HOH . K 4 HOH B 25 725 87 HOH HOH . K 4 HOH B 26 726 17 HOH HOH . K 4 HOH B 27 727 15 HOH HOH . K 4 HOH B 28 728 77 HOH HOH . K 4 HOH B 29 729 25 HOH HOH . K 4 HOH B 30 730 67 HOH HOH . K 4 HOH B 31 731 22 HOH HOH . K 4 HOH B 32 732 12 HOH HOH . K 4 HOH B 33 733 73 HOH HOH . K 4 HOH B 34 734 38 HOH HOH . K 4 HOH B 35 735 75 HOH HOH . K 4 HOH B 36 736 3 HOH HOH . K 4 HOH B 37 737 98 HOH HOH . K 4 HOH B 38 738 35 HOH HOH . K 4 HOH B 39 739 89 HOH HOH . K 4 HOH B 40 740 74 HOH HOH . K 4 HOH B 41 741 19 HOH HOH . K 4 HOH B 42 742 82 HOH HOH . K 4 HOH B 43 743 43 HOH HOH . K 4 HOH B 44 744 94 HOH HOH . K 4 HOH B 45 745 88 HOH HOH . K 4 HOH B 46 746 8 HOH HOH . K 4 HOH B 47 747 50 HOH HOH . K 4 HOH B 48 748 70 HOH HOH . K 4 HOH B 49 749 86 HOH HOH . K 4 HOH B 50 750 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 IGT . . . I 3 24.25 -40.677 13.798 1 26.42 ? C10 IGT 604 B 1 HETATM 2 C C01 IGT . . . I 3 26.759 -40.317 13.794 1 28.2 ? C01 IGT 604 B 1 HETATM 3 C C03 IGT . . . I 3 25.83 -42.626 14.248 1 24.55 ? C03 IGT 604 B 1 HETATM 4 C C06 IGT . . . I 3 23.313 -43.042 14.254 1 23.68 ? C06 IGT 604 B 1 HETATM 5 C C07 IGT . . . I 3 22.14 -44.004 14.405 1 23.04 ? C07 IGT 604 B 1 HETATM 6 C C08 IGT . . . I 3 23.08 -41.602 13.95 1 23.22 ? C08 IGT 604 B 1 HETATM 7 N N02 IGT . . . I 3 25.606 -41.189 13.952 1 27.47 ? N02 IGT 604 B 1 HETATM 8 N N05 IGT . . . I 3 24.673 -43.536 14.385 1 22.44 ? N05 IGT 604 B 1 HETATM 9 N N09 IGT . . . I 3 21.73 -41.088 13.82 1 21.94 ? N09 IGT 604 B 1 HETATM 10 O O04 IGT . . . I 3 26.929 -43.042 14.366 1 25.58 ? O04 IGT 604 B 1 HETATM 11 O O11 IGT . . . I 3 24.064 -39.525 13.557 1 25.35 ? O11 IGT 604 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #