data_7Z94 # _model_server_result.job_id Zqn63yiDI6-qjkzwWg4YUw _model_server_result.datetime_utc '2024-12-02 20:33:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 7Z94 # _exptl.entry_id 7Z94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z94 _cell.length_a 93.938 _cell.length_b 93.938 _cell.length_c 110.867 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 52 A SER 31 1_555 L NA NA . A NA 511 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc2 L NA NA . A NA 511 1_555 O O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc3 L NA NA . A NA 511 1_555 O O HOH . A HOH 837 2_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7Z94 _atom_sites.fract_transf_matrix[1][1] 0.010645 _atom_sites.fract_transf_matrix[1][2] 0.006146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 501 FAD FAD . C 3 IND A 1 502 502 IND IND . D 3 IND A 1 503 503 IND IND . E 3 IND A 1 504 504 IND IND . F 4 SO4 A 1 505 505 SO4 SO4 . G 5 DMS A 1 506 506 DMS DMS . H 3 IND A 1 507 507 IND IND . I 3 IND A 1 508 508 IND IND . J 3 IND A 1 509 509 IND IND . K 3 IND A 1 510 510 IND IND . L 6 NA A 1 511 1 NA NA . M 4 SO4 A 1 512 1 SO4 SO4 . N 4 SO4 A 1 513 2 SO4 SO4 . O 7 HOH A 1 601 113 HOH HOH . O 7 HOH A 2 602 267 HOH HOH . O 7 HOH A 3 603 172 HOH HOH . O 7 HOH A 4 604 154 HOH HOH . O 7 HOH A 5 605 216 HOH HOH . O 7 HOH A 6 606 202 HOH HOH . O 7 HOH A 7 607 233 HOH HOH . O 7 HOH A 8 608 180 HOH HOH . O 7 HOH A 9 609 69 HOH HOH . O 7 HOH A 10 610 92 HOH HOH . O 7 HOH A 11 611 189 HOH HOH . O 7 HOH A 12 612 82 HOH HOH . O 7 HOH A 13 613 123 HOH HOH . O 7 HOH A 14 614 29 HOH HOH . O 7 HOH A 15 615 136 HOH HOH . O 7 HOH A 16 616 215 HOH HOH . O 7 HOH A 17 617 137 HOH HOH . O 7 HOH A 18 618 53 HOH HOH . O 7 HOH A 19 619 48 HOH HOH . O 7 HOH A 20 620 42 HOH HOH . O 7 HOH A 21 621 16 HOH HOH . O 7 HOH A 22 622 26 HOH HOH . O 7 HOH A 23 623 155 HOH HOH . O 7 HOH A 24 624 144 HOH HOH . O 7 HOH A 25 625 102 HOH HOH . O 7 HOH A 26 626 149 HOH HOH . O 7 HOH A 27 627 25 HOH HOH . O 7 HOH A 28 628 43 HOH HOH . O 7 HOH A 29 629 212 HOH HOH . O 7 HOH A 30 630 35 HOH HOH . O 7 HOH A 31 631 186 HOH HOH . O 7 HOH A 32 632 101 HOH HOH . O 7 HOH A 33 633 139 HOH HOH . O 7 HOH A 34 634 237 HOH HOH . O 7 HOH A 35 635 96 HOH HOH . O 7 HOH A 36 636 104 HOH HOH . O 7 HOH A 37 637 240 HOH HOH . O 7 HOH A 38 638 81 HOH HOH . O 7 HOH A 39 639 28 HOH HOH . O 7 HOH A 40 640 140 HOH HOH . O 7 HOH A 41 641 156 HOH HOH . O 7 HOH A 42 642 241 HOH HOH . O 7 HOH A 43 643 99 HOH HOH . O 7 HOH A 44 644 170 HOH HOH . O 7 HOH A 45 645 97 HOH HOH . O 7 HOH A 46 646 47 HOH HOH . O 7 HOH A 47 647 23 HOH HOH . O 7 HOH A 48 648 177 HOH HOH . O 7 HOH A 49 649 86 HOH HOH . O 7 HOH A 50 650 9 HOH HOH . O 7 HOH A 51 651 98 HOH HOH . O 7 HOH A 52 652 262 HOH HOH . O 7 HOH A 53 653 190 HOH HOH . O 7 HOH A 54 654 126 HOH HOH . O 7 HOH A 55 655 135 HOH HOH . O 7 HOH A 56 656 150 HOH HOH . O 7 HOH A 57 657 91 HOH HOH . O 7 HOH A 58 658 232 HOH HOH . O 7 HOH A 59 659 5 HOH HOH . O 7 HOH A 60 660 254 HOH HOH . O 7 HOH A 61 661 51 HOH HOH . O 7 HOH A 62 662 103 HOH HOH . O 7 HOH A 63 663 199 HOH HOH . O 7 HOH A 64 664 200 HOH HOH . O 7 HOH A 65 665 75 HOH HOH . O 7 HOH A 66 666 71 HOH HOH . O 7 HOH A 67 667 18 HOH HOH . O 7 HOH A 68 668 197 HOH HOH . O 7 HOH A 69 669 7 HOH HOH . O 7 HOH A 70 670 59 HOH HOH . O 7 HOH A 71 671 145 HOH HOH . O 7 HOH A 72 672 17 HOH HOH . O 7 HOH A 73 673 57 HOH HOH . O 7 HOH A 74 674 40 HOH HOH . O 7 HOH A 75 675 50 HOH HOH . O 7 HOH A 76 676 66 HOH HOH . O 7 HOH A 77 677 198 HOH HOH . O 7 HOH A 78 678 220 HOH HOH . O 7 HOH A 79 679 62 HOH HOH . O 7 HOH A 80 680 33 HOH HOH . O 7 HOH A 81 681 148 HOH HOH . O 7 HOH A 82 682 114 HOH HOH . O 7 HOH A 83 683 221 HOH HOH . O 7 HOH A 84 684 163 HOH HOH . O 7 HOH A 85 685 160 HOH HOH . O 7 HOH A 86 686 80 HOH HOH . O 7 HOH A 87 687 112 HOH HOH . O 7 HOH A 88 688 203 HOH HOH . O 7 HOH A 89 689 68 HOH HOH . O 7 HOH A 90 690 128 HOH HOH . O 7 HOH A 91 691 76 HOH HOH . O 7 HOH A 92 692 93 HOH HOH . O 7 HOH A 93 693 132 HOH HOH . O 7 HOH A 94 694 89 HOH HOH . O 7 HOH A 95 695 32 HOH HOH . O 7 HOH A 96 696 94 HOH HOH . O 7 HOH A 97 697 129 HOH HOH . O 7 HOH A 98 698 65 HOH HOH . O 7 HOH A 99 699 191 HOH HOH . O 7 HOH A 100 700 79 HOH HOH . O 7 HOH A 101 701 105 HOH HOH . O 7 HOH A 102 702 214 HOH HOH . O 7 HOH A 103 703 106 HOH HOH . O 7 HOH A 104 704 265 HOH HOH . O 7 HOH A 105 705 173 HOH HOH . O 7 HOH A 106 706 152 HOH HOH . O 7 HOH A 107 707 14 HOH HOH . O 7 HOH A 108 708 181 HOH HOH . O 7 HOH A 109 709 153 HOH HOH . O 7 HOH A 110 710 122 HOH HOH . O 7 HOH A 111 711 230 HOH HOH . O 7 HOH A 112 712 63 HOH HOH . O 7 HOH A 113 713 83 HOH HOH . O 7 HOH A 114 714 56 HOH HOH . O 7 HOH A 115 715 61 HOH HOH . O 7 HOH A 116 716 168 HOH HOH . O 7 HOH A 117 717 130 HOH HOH . O 7 HOH A 118 718 38 HOH HOH . O 7 HOH A 119 719 37 HOH HOH . O 7 HOH A 120 720 218 HOH HOH . O 7 HOH A 121 721 248 HOH HOH . O 7 HOH A 122 722 87 HOH HOH . O 7 HOH A 123 723 4 HOH HOH . O 7 HOH A 124 724 158 HOH HOH . O 7 HOH A 125 725 85 HOH HOH . O 7 HOH A 126 726 138 HOH HOH . O 7 HOH A 127 727 67 HOH HOH . O 7 HOH A 128 728 227 HOH HOH . O 7 HOH A 129 729 229 HOH HOH . O 7 HOH A 130 730 24 HOH HOH . O 7 HOH A 131 731 77 HOH HOH . O 7 HOH A 132 732 20 HOH HOH . O 7 HOH A 133 733 44 HOH HOH . O 7 HOH A 134 734 162 HOH HOH . O 7 HOH A 135 735 78 HOH HOH . O 7 HOH A 136 736 54 HOH HOH . O 7 HOH A 137 737 21 HOH HOH . O 7 HOH A 138 738 225 HOH HOH . O 7 HOH A 139 739 194 HOH HOH . O 7 HOH A 140 740 109 HOH HOH . O 7 HOH A 141 741 238 HOH HOH . O 7 HOH A 142 742 239 HOH HOH . O 7 HOH A 143 743 6 HOH HOH . O 7 HOH A 144 744 176 HOH HOH . O 7 HOH A 145 745 84 HOH HOH . O 7 HOH A 146 746 72 HOH HOH . O 7 HOH A 147 747 13 HOH HOH . O 7 HOH A 148 748 121 HOH HOH . O 7 HOH A 149 749 179 HOH HOH . O 7 HOH A 150 750 187 HOH HOH . O 7 HOH A 151 751 244 HOH HOH . O 7 HOH A 152 752 41 HOH HOH . O 7 HOH A 153 753 64 HOH HOH . O 7 HOH A 154 754 15 HOH HOH . O 7 HOH A 155 755 146 HOH HOH . O 7 HOH A 156 756 45 HOH HOH . O 7 HOH A 157 757 27 HOH HOH . O 7 HOH A 158 758 74 HOH HOH . O 7 HOH A 159 759 217 HOH HOH . O 7 HOH A 160 760 70 HOH HOH . O 7 HOH A 161 761 196 HOH HOH . O 7 HOH A 162 762 49 HOH HOH . O 7 HOH A 163 763 245 HOH HOH . O 7 HOH A 164 764 115 HOH HOH . O 7 HOH A 165 765 108 HOH HOH . O 7 HOH A 166 766 164 HOH HOH . O 7 HOH A 167 767 117 HOH HOH . O 7 HOH A 168 768 133 HOH HOH . O 7 HOH A 169 769 60 HOH HOH . O 7 HOH A 170 770 55 HOH HOH . O 7 HOH A 171 771 224 HOH HOH . O 7 HOH A 172 772 3 HOH HOH . O 7 HOH A 173 773 36 HOH HOH . O 7 HOH A 174 774 120 HOH HOH . O 7 HOH A 175 775 261 HOH HOH . O 7 HOH A 176 776 111 HOH HOH . O 7 HOH A 177 777 100 HOH HOH . O 7 HOH A 178 778 174 HOH HOH . O 7 HOH A 179 779 226 HOH HOH . O 7 HOH A 180 780 243 HOH HOH . O 7 HOH A 181 781 30 HOH HOH . O 7 HOH A 182 782 110 HOH HOH . O 7 HOH A 183 783 19 HOH HOH . O 7 HOH A 184 784 257 HOH HOH . O 7 HOH A 185 785 247 HOH HOH . O 7 HOH A 186 786 10 HOH HOH . O 7 HOH A 187 787 39 HOH HOH . O 7 HOH A 188 788 260 HOH HOH . O 7 HOH A 189 789 255 HOH HOH . O 7 HOH A 190 790 219 HOH HOH . O 7 HOH A 191 791 246 HOH HOH . O 7 HOH A 192 792 253 HOH HOH . O 7 HOH A 193 793 182 HOH HOH . O 7 HOH A 194 794 134 HOH HOH . O 7 HOH A 195 795 88 HOH HOH . O 7 HOH A 196 796 165 HOH HOH . O 7 HOH A 197 797 124 HOH HOH . O 7 HOH A 198 798 119 HOH HOH . O 7 HOH A 199 799 195 HOH HOH . O 7 HOH A 200 800 231 HOH HOH . O 7 HOH A 201 801 266 HOH HOH . O 7 HOH A 202 802 11 HOH HOH . O 7 HOH A 203 803 1 HOH HOH . O 7 HOH A 204 804 58 HOH HOH . O 7 HOH A 205 805 2 HOH HOH . O 7 HOH A 206 806 141 HOH HOH . O 7 HOH A 207 807 73 HOH HOH . O 7 HOH A 208 808 201 HOH HOH . O 7 HOH A 209 809 46 HOH HOH . O 7 HOH A 210 810 228 HOH HOH . O 7 HOH A 211 811 223 HOH HOH . O 7 HOH A 212 812 234 HOH HOH . O 7 HOH A 213 813 242 HOH HOH . O 7 HOH A 214 814 263 HOH HOH . O 7 HOH A 215 815 192 HOH HOH . O 7 HOH A 216 816 8 HOH HOH . O 7 HOH A 217 817 142 HOH HOH . O 7 HOH A 218 818 31 HOH HOH . O 7 HOH A 219 819 250 HOH HOH . O 7 HOH A 220 820 12 HOH HOH . O 7 HOH A 221 821 222 HOH HOH . O 7 HOH A 222 822 118 HOH HOH . O 7 HOH A 223 823 127 HOH HOH . O 7 HOH A 224 824 161 HOH HOH . O 7 HOH A 225 825 249 HOH HOH . O 7 HOH A 226 826 34 HOH HOH . O 7 HOH A 227 827 157 HOH HOH . O 7 HOH A 228 828 204 HOH HOH . O 7 HOH A 229 829 107 HOH HOH . O 7 HOH A 230 830 236 HOH HOH . O 7 HOH A 231 831 143 HOH HOH . O 7 HOH A 232 832 259 HOH HOH . O 7 HOH A 233 833 22 HOH HOH . O 7 HOH A 234 834 169 HOH HOH . O 7 HOH A 235 835 125 HOH HOH . O 7 HOH A 236 836 90 HOH HOH . O 7 HOH A 237 837 264 HOH HOH . O 7 HOH A 238 838 209 HOH HOH . O 7 HOH A 239 839 52 HOH HOH . O 7 HOH A 240 840 208 HOH HOH . O 7 HOH A 241 841 185 HOH HOH . O 7 HOH A 242 842 175 HOH HOH . O 7 HOH A 243 843 235 HOH HOH . O 7 HOH A 244 844 167 HOH HOH . O 7 HOH A 245 845 210 HOH HOH . O 7 HOH A 246 846 193 HOH HOH . O 7 HOH A 247 847 211 HOH HOH . O 7 HOH A 248 848 131 HOH HOH . O 7 HOH A 249 849 205 HOH HOH . O 7 HOH A 250 850 252 HOH HOH . O 7 HOH A 251 851 251 HOH HOH . O 7 HOH A 252 852 178 HOH HOH . O 7 HOH A 253 853 151 HOH HOH . O 7 HOH A 254 854 258 HOH HOH . O 7 HOH A 255 855 116 HOH HOH . O 7 HOH A 256 856 256 HOH HOH . O 7 HOH A 257 857 147 HOH HOH . O 7 HOH A 258 858 171 HOH HOH . O 7 HOH A 259 859 206 HOH HOH . O 7 HOH A 260 860 159 HOH HOH . O 7 HOH A 261 861 207 HOH HOH . O 7 HOH A 262 862 188 HOH HOH . O 7 HOH A 263 863 183 HOH HOH . O 7 HOH A 264 864 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 5 4.416 79.042 22.246 0.82 59.89 ? S DMS 506 A 1 HETATM 2 O O DMS . . . G 5 2.982 78.633 22.093 0.82 60.74 ? O DMS 506 A 1 HETATM 3 C C1 DMS . . . G 5 5.509 77.65 21.821 0.82 49.68 ? C1 DMS 506 A 1 HETATM 4 C C2 DMS . . . G 5 4.806 79.168 24.016 0.82 55.91 ? C2 DMS 506 A 1 HETATM 5 H H11 DMS . . . G 5 5.564 76.981 22.64 0.82 59.32 ? H11 DMS 506 A 1 HETATM 6 H H12 DMS . . . G 5 5.122 77.142 20.976 0.82 59.32 ? H12 DMS 506 A 1 HETATM 7 H H13 DMS . . . G 5 6.477 78.016 21.599 0.82 59.32 ? H13 DMS 506 A 1 HETATM 8 H H21 DMS . . . G 5 5.799 79.516 24.135 0.82 66.79 ? H21 DMS 506 A 1 HETATM 9 H H22 DMS . . . G 5 4.137 79.846 24.478 0.82 66.79 ? H22 DMS 506 A 1 HETATM 10 H H23 DMS . . . G 5 4.711 78.215 24.468 0.82 66.79 ? H23 DMS 506 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #