data_7Z9S # _model_server_result.job_id fVRSsKZZhg7uPHG3IS5_Dw _model_server_result.datetime_utc '2024-11-13 12:19:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 7Z9S # _exptl.entry_id 7Z9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.301 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-2-acetamido-5-carbamimidamido-~{N}-prop-2-enyl-pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z9S _cell.length_a 79.37 _cell.length_b 79.37 _cell.length_c 137.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 101 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1079 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id IJI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id IJI _struct_conn.ptnr2_auth_seq_id 1203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.672 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H19 N5 O2' _chem_comp.formula_weight 253.301 _chem_comp.id IJI _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-2-acetamido-5-carbamimidamido-~{N}-prop-2-enyl-pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 IJI sing 161 n n N1 C3 IJI doub 162 n n N1 C4 IJI sing 163 n n C3 C2 IJI sing 164 n n C10 O2 IJI doub 165 n n C10 N5 IJI sing 166 n n C5 C4 IJI sing 167 n n C5 N5 IJI sing 168 n n C5 C6 IJI sing 169 n n C4 O1 IJI doub 170 n n C2 C1 IJI doub 171 n n C6 C7 IJI sing 172 n n C7 C8 IJI sing 173 n n C8 N2 IJI sing 174 n n N2 C9 IJI sing 175 n n N4 C9 IJI doub 176 n n C9 N3 IJI sing 177 n n C5 H1 IJI sing 178 n n C6 H2 IJI sing 179 n n C6 H3 IJI sing 180 n n C11 H4 IJI sing 181 n n C11 H5 IJI sing 182 n n C11 H6 IJI sing 183 n n C7 H7 IJI sing 184 n n C7 H8 IJI sing 185 n n C8 H9 IJI sing 186 n n C8 H10 IJI sing 187 n n N2 H12 IJI sing 188 n n C3 H13 IJI sing 189 n n N3 H15 IJI sing 190 n n N3 H16 IJI sing 191 n n C1 H17 IJI sing 192 n n C1 H18 IJI sing 193 n n C2 H19 IJI sing 194 n n N4 H20 IJI sing 195 n n N5 H21 IJI sing 196 n n # _atom_sites.entry_id 7Z9S _atom_sites.fract_transf_matrix[1][1] 0.012599 _atom_sites.fract_transf_matrix[1][2] 0.007274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 AAA 1 1201 1 SO4 SO4 . C 3 CL AAA 1 1202 1109 CL CL . D 4 IJI AAA 1 1203 1110 IJI DRG . E 5 EDO AAA 1 1204 1 EDO EDO . F 5 EDO AAA 1 1205 2 EDO EDO . G 5 EDO AAA 1 1206 3 EDO EDO . H 5 EDO AAA 1 1207 4 EDO EDO . I 5 EDO AAA 1 1208 5 EDO EDO . J 5 EDO AAA 1 1209 6 EDO EDO . K 2 SO4 AAA 1 1210 1 SO4 SO4 . L 6 HOH AAA 1 1301 144 HOH HOH . L 6 HOH AAA 2 1302 213 HOH HOH . L 6 HOH AAA 3 1303 178 HOH HOH . L 6 HOH AAA 4 1304 164 HOH HOH . L 6 HOH AAA 5 1305 166 HOH HOH . L 6 HOH AAA 6 1306 158 HOH HOH . L 6 HOH AAA 7 1307 67 HOH HOH . L 6 HOH AAA 8 1308 159 HOH HOH . L 6 HOH AAA 9 1309 65 HOH HOH . L 6 HOH AAA 10 1310 237 HOH HOH . L 6 HOH AAA 11 1311 100 HOH HOH . L 6 HOH AAA 12 1312 150 HOH HOH . L 6 HOH AAA 13 1313 215 HOH HOH . L 6 HOH AAA 14 1314 47 HOH HOH . L 6 HOH AAA 15 1315 124 HOH HOH . L 6 HOH AAA 16 1316 49 HOH HOH . L 6 HOH AAA 17 1317 147 HOH HOH . L 6 HOH AAA 18 1318 175 HOH HOH . L 6 HOH AAA 19 1319 95 HOH HOH . L 6 HOH AAA 20 1320 23 HOH HOH . L 6 HOH AAA 21 1321 69 HOH HOH . L 6 HOH AAA 22 1322 55 HOH HOH . L 6 HOH AAA 23 1323 14 HOH HOH . L 6 HOH AAA 24 1324 77 HOH HOH . L 6 HOH AAA 25 1325 149 HOH HOH . L 6 HOH AAA 26 1326 42 HOH HOH . L 6 HOH AAA 27 1327 54 HOH HOH . L 6 HOH AAA 28 1328 240 HOH HOH . L 6 HOH AAA 29 1329 51 HOH HOH . L 6 HOH AAA 30 1330 13 HOH HOH . L 6 HOH AAA 31 1331 98 HOH HOH . L 6 HOH AAA 32 1332 22 HOH HOH . L 6 HOH AAA 33 1333 32 HOH HOH . L 6 HOH AAA 34 1334 12 HOH HOH . L 6 HOH AAA 35 1335 235 HOH HOH . L 6 HOH AAA 36 1336 176 HOH HOH . L 6 HOH AAA 37 1337 1 HOH HOH . L 6 HOH AAA 38 1338 33 HOH HOH . L 6 HOH AAA 39 1339 17 HOH HOH . L 6 HOH AAA 40 1340 15 HOH HOH . L 6 HOH AAA 41 1341 241 HOH HOH . L 6 HOH AAA 42 1342 170 HOH HOH . L 6 HOH AAA 43 1343 8 HOH HOH . L 6 HOH AAA 44 1344 126 HOH HOH . L 6 HOH AAA 45 1345 114 HOH HOH . L 6 HOH AAA 46 1346 193 HOH HOH . L 6 HOH AAA 47 1347 71 HOH HOH . L 6 HOH AAA 48 1348 93 HOH HOH . L 6 HOH AAA 49 1349 220 HOH HOH . L 6 HOH AAA 50 1350 120 HOH HOH . L 6 HOH AAA 51 1351 234 HOH HOH . L 6 HOH AAA 52 1352 226 HOH HOH . L 6 HOH AAA 53 1353 61 HOH HOH . L 6 HOH AAA 54 1354 107 HOH HOH . L 6 HOH AAA 55 1355 37 HOH HOH . L 6 HOH AAA 56 1356 87 HOH HOH . L 6 HOH AAA 57 1357 121 HOH HOH . L 6 HOH AAA 58 1358 91 HOH HOH . L 6 HOH AAA 59 1359 73 HOH HOH . L 6 HOH AAA 60 1360 72 HOH HOH . L 6 HOH AAA 61 1361 78 HOH HOH . L 6 HOH AAA 62 1362 238 HOH HOH . L 6 HOH AAA 63 1363 118 HOH HOH . L 6 HOH AAA 64 1364 36 HOH HOH . L 6 HOH AAA 65 1365 2 HOH HOH . L 6 HOH AAA 66 1366 129 HOH HOH . L 6 HOH AAA 67 1367 29 HOH HOH . L 6 HOH AAA 68 1368 39 HOH HOH . L 6 HOH AAA 69 1369 19 HOH HOH . L 6 HOH AAA 70 1370 38 HOH HOH . L 6 HOH AAA 71 1371 243 HOH HOH . L 6 HOH AAA 72 1372 11 HOH HOH . L 6 HOH AAA 73 1373 34 HOH HOH . L 6 HOH AAA 74 1374 113 HOH HOH . L 6 HOH AAA 75 1375 123 HOH HOH . L 6 HOH AAA 76 1376 160 HOH HOH . L 6 HOH AAA 77 1377 53 HOH HOH . L 6 HOH AAA 78 1378 24 HOH HOH . L 6 HOH AAA 79 1379 244 HOH HOH . L 6 HOH AAA 80 1380 40 HOH HOH . L 6 HOH AAA 81 1381 128 HOH HOH . L 6 HOH AAA 82 1382 18 HOH HOH . L 6 HOH AAA 83 1383 110 HOH HOH . L 6 HOH AAA 84 1384 97 HOH HOH . L 6 HOH AAA 85 1385 89 HOH HOH . L 6 HOH AAA 86 1386 21 HOH HOH . L 6 HOH AAA 87 1387 58 HOH HOH . L 6 HOH AAA 88 1388 239 HOH HOH . L 6 HOH AAA 89 1389 48 HOH HOH . L 6 HOH AAA 90 1390 197 HOH HOH . L 6 HOH AAA 91 1391 173 HOH HOH . L 6 HOH AAA 92 1392 108 HOH HOH . L 6 HOH AAA 93 1393 125 HOH HOH . L 6 HOH AAA 94 1394 222 HOH HOH . L 6 HOH AAA 95 1395 145 HOH HOH . L 6 HOH AAA 96 1396 161 HOH HOH . L 6 HOH AAA 97 1397 20 HOH HOH . L 6 HOH AAA 98 1398 75 HOH HOH . L 6 HOH AAA 99 1399 3 HOH HOH . L 6 HOH AAA 100 1400 50 HOH HOH . L 6 HOH AAA 101 1401 52 HOH HOH . L 6 HOH AAA 102 1402 4 HOH HOH . L 6 HOH AAA 103 1403 26 HOH HOH . L 6 HOH AAA 104 1404 35 HOH HOH . L 6 HOH AAA 105 1405 242 HOH HOH . L 6 HOH AAA 106 1406 57 HOH HOH . L 6 HOH AAA 107 1407 79 HOH HOH . L 6 HOH AAA 108 1408 236 HOH HOH . L 6 HOH AAA 109 1409 117 HOH HOH . L 6 HOH AAA 110 1410 86 HOH HOH . L 6 HOH AAA 111 1411 153 HOH HOH . L 6 HOH AAA 112 1412 224 HOH HOH . L 6 HOH AAA 113 1413 133 HOH HOH . L 6 HOH AAA 114 1414 6 HOH HOH . L 6 HOH AAA 115 1415 84 HOH HOH . L 6 HOH AAA 116 1416 76 HOH HOH . L 6 HOH AAA 117 1417 106 HOH HOH . L 6 HOH AAA 118 1418 105 HOH HOH . L 6 HOH AAA 119 1419 122 HOH HOH . L 6 HOH AAA 120 1420 88 HOH HOH . L 6 HOH AAA 121 1421 221 HOH HOH . L 6 HOH AAA 122 1422 169 HOH HOH . L 6 HOH AAA 123 1423 43 HOH HOH . L 6 HOH AAA 124 1424 25 HOH HOH . L 6 HOH AAA 125 1425 139 HOH HOH . L 6 HOH AAA 126 1426 64 HOH HOH . L 6 HOH AAA 127 1427 66 HOH HOH . L 6 HOH AAA 128 1428 59 HOH HOH . L 6 HOH AAA 129 1429 90 HOH HOH . L 6 HOH AAA 130 1430 188 HOH HOH . L 6 HOH AAA 131 1431 74 HOH HOH . L 6 HOH AAA 132 1432 9 HOH HOH . L 6 HOH AAA 133 1433 195 HOH HOH . L 6 HOH AAA 134 1434 127 HOH HOH . L 6 HOH AAA 135 1435 189 HOH HOH . L 6 HOH AAA 136 1436 135 HOH HOH . L 6 HOH AAA 137 1437 94 HOH HOH . L 6 HOH AAA 138 1438 225 HOH HOH . L 6 HOH AAA 139 1439 174 HOH HOH . L 6 HOH AAA 140 1440 217 HOH HOH . L 6 HOH AAA 141 1441 151 HOH HOH . L 6 HOH AAA 142 1442 131 HOH HOH . L 6 HOH AAA 143 1443 171 HOH HOH . L 6 HOH AAA 144 1444 186 HOH HOH . L 6 HOH AAA 145 1445 155 HOH HOH . L 6 HOH AAA 146 1446 202 HOH HOH . L 6 HOH AAA 147 1447 80 HOH HOH . L 6 HOH AAA 148 1448 172 HOH HOH . L 6 HOH AAA 149 1449 208 HOH HOH . L 6 HOH AAA 150 1450 92 HOH HOH . L 6 HOH AAA 151 1451 16 HOH HOH . L 6 HOH AAA 152 1452 28 HOH HOH . L 6 HOH AAA 153 1453 112 HOH HOH . L 6 HOH AAA 154 1454 7 HOH HOH . L 6 HOH AAA 155 1455 81 HOH HOH . L 6 HOH AAA 156 1456 168 HOH HOH . L 6 HOH AAA 157 1457 204 HOH HOH . L 6 HOH AAA 158 1458 68 HOH HOH . L 6 HOH AAA 159 1459 27 HOH HOH . L 6 HOH AAA 160 1460 119 HOH HOH . L 6 HOH AAA 161 1461 82 HOH HOH . L 6 HOH AAA 162 1462 219 HOH HOH . L 6 HOH AAA 163 1463 184 HOH HOH . L 6 HOH AAA 164 1464 137 HOH HOH . L 6 HOH AAA 165 1465 218 HOH HOH . L 6 HOH AAA 166 1466 227 HOH HOH . L 6 HOH AAA 167 1467 63 HOH HOH . L 6 HOH AAA 168 1468 198 HOH HOH . L 6 HOH AAA 169 1469 30 HOH HOH . L 6 HOH AAA 170 1470 190 HOH HOH . L 6 HOH AAA 171 1471 46 HOH HOH . L 6 HOH AAA 172 1472 99 HOH HOH . L 6 HOH AAA 173 1473 141 HOH HOH . L 6 HOH AAA 174 1474 115 HOH HOH . L 6 HOH AAA 175 1475 5 HOH HOH . L 6 HOH AAA 176 1476 191 HOH HOH . L 6 HOH AAA 177 1477 62 HOH HOH . L 6 HOH AAA 178 1478 56 HOH HOH . L 6 HOH AAA 179 1479 103 HOH HOH . L 6 HOH AAA 180 1480 136 HOH HOH . L 6 HOH AAA 181 1481 165 HOH HOH . L 6 HOH AAA 182 1482 101 HOH HOH . L 6 HOH AAA 183 1483 140 HOH HOH . L 6 HOH AAA 184 1484 177 HOH HOH . L 6 HOH AAA 185 1485 60 HOH HOH . L 6 HOH AAA 186 1486 45 HOH HOH . L 6 HOH AAA 187 1487 143 HOH HOH . L 6 HOH AAA 188 1488 233 HOH HOH . L 6 HOH AAA 189 1489 205 HOH HOH . L 6 HOH AAA 190 1490 44 HOH HOH . L 6 HOH AAA 191 1491 148 HOH HOH . L 6 HOH AAA 192 1492 138 HOH HOH . L 6 HOH AAA 193 1493 232 HOH HOH . L 6 HOH AAA 194 1494 70 HOH HOH . L 6 HOH AAA 195 1495 154 HOH HOH . L 6 HOH AAA 196 1496 216 HOH HOH . L 6 HOH AAA 197 1497 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 IJI . . . D 4 -25.804 30.635 8.297 1 111.1 ? C4 IJI 1203 AAA 1 HETATM 2 C C5 IJI . . . D 4 -27.269 30.32 7.984 1 95.13 ? C5 IJI 1203 AAA 1 HETATM 3 C C6 IJI . . . D 4 -28.379 31.219 8.564 1 64.22 ? C6 IJI 1203 AAA 1 HETATM 4 C C11 IJI . . . D 4 -27.045 27.76 6.446 1 93.93 ? C11 IJI 1203 AAA 1 HETATM 5 C C7 IJI . . . D 4 -28.605 31.01 10.058 1 79.59 ? C7 IJI 1203 AAA 1 HETATM 6 C C8 IJI . . . D 4 -29.454 29.82 10.502 1 88.17 ? C8 IJI 1203 AAA 1 HETATM 7 C C9 IJI . . . D 4 -28.018 29.032 12.425 1 93.95 ? C9 IJI 1203 AAA 1 HETATM 8 C C10 IJI . . . D 4 -27.866 27.986 7.674 1 105.79 ? C10 IJI 1203 AAA 1 HETATM 9 N N1 IJI . . . D 4 -24.941 30.244 7.41 1 95.57 ? N1 IJI 1203 AAA 1 HETATM 10 N N2 IJI . . . D 4 -28.887 28.825 11.428 1 98.62 ? N2 IJI 1203 AAA 1 HETATM 11 C C3 IJI . . . D 4 -23.668 29.75 7.625 1 88.36 ? C3 IJI 1203 AAA 1 HETATM 12 N N3 IJI . . . D 4 -28.365 28.659 13.649 1 89.03 ? N3 IJI 1203 AAA 1 HETATM 13 C C1 IJI . . . D 4 -21.917 29.539 9.211 1 83.77 ? C1 IJI 1203 AAA 1 HETATM 14 C C2 IJI . . . D 4 -22.649 30.355 8.474 1 71.99 ? C2 IJI 1203 AAA 1 HETATM 15 O O1 IJI . . . D 4 -25.472 31.067 9.416 1 134.72 ? O1 IJI 1203 AAA 1 HETATM 16 N N4 IJI . . . D 4 -26.796 29.508 12.198 1 78.15 ? N4 IJI 1203 AAA 1 HETATM 17 N N5 IJI . . . D 4 -27.506 28.98 8.48 1 102.43 ? N5 IJI 1203 AAA 1 HETATM 18 O O2 IJI . . . D 4 -28.875 27.334 7.905 1 109.13 ? O2 IJI 1203 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #