data_7Z9T # _model_server_result.job_id fqJXcd5Yhou1OWK9P6CjcA _model_server_result.datetime_utc '2024-11-24 21:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 7Z9T # _exptl.entry_id 7Z9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.78 _cell.angle_gamma 90 _cell.entry_id 7Z9T _cell.length_a 67.141 _cell.length_b 68.072 _cell.length_c 79.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 113 n n PG O2G ATP sing 114 n n PG O3G ATP sing 115 n n PG O3B ATP sing 116 n n O2G HOG2 ATP sing 117 n n O3G HOG3 ATP sing 118 n n PB O1B ATP doub 119 n n PB O2B ATP sing 120 n n PB O3B ATP sing 121 n n PB O3A ATP sing 122 n n O2B HOB2 ATP sing 123 n n PA O1A ATP doub 124 n n PA O2A ATP sing 125 n n PA O3A ATP sing 126 n n PA O5' ATP sing 127 n n O2A HOA2 ATP sing 128 n n O5' C5' ATP sing 129 n n C5' C4' ATP sing 130 n n C5' "H5'1" ATP sing 131 n n C5' "H5'2" ATP sing 132 n n C4' O4' ATP sing 133 n n C4' C3' ATP sing 134 n n C4' H4' ATP sing 135 n n O4' C1' ATP sing 136 n n C3' O3' ATP sing 137 n n C3' C2' ATP sing 138 n n C3' H3' ATP sing 139 n n O3' HO3' ATP sing 140 n n C2' O2' ATP sing 141 n n C2' C1' ATP sing 142 n n C2' H2' ATP sing 143 n n O2' HO2' ATP sing 144 n n C1' N9 ATP sing 145 n n C1' H1' ATP sing 146 n n N9 C8 ATP sing 147 n y N9 C4 ATP sing 148 n y C8 N7 ATP doub 149 n y C8 H8 ATP sing 150 n n N7 C5 ATP sing 151 n y C5 C6 ATP sing 152 n y C5 C4 ATP doub 153 n y C6 N6 ATP sing 154 n n C6 N1 ATP doub 155 n y N6 HN61 ATP sing 156 n n N6 HN62 ATP sing 157 n n N1 C2 ATP sing 158 n y C2 N3 ATP doub 159 n y C2 H2 ATP sing 160 n n N3 C4 ATP sing 161 n y # _atom_sites.entry_id 7Z9T _atom_sites.fract_transf_matrix[1][1] 0.014894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 87B AAA 1 401 1 87B LRN . D 2 87B BBB 1 401 2 87B LRN . E 3 ATP BBB 1 402 1 ATP ATP . F 4 HOH AAA 1 501 49 HOH HOH . F 4 HOH AAA 2 502 111 HOH HOH . F 4 HOH AAA 3 503 29 HOH HOH . F 4 HOH AAA 4 504 62 HOH HOH . F 4 HOH AAA 5 505 81 HOH HOH . F 4 HOH AAA 6 506 86 HOH HOH . F 4 HOH AAA 7 507 34 HOH HOH . F 4 HOH AAA 8 508 54 HOH HOH . F 4 HOH AAA 9 509 118 HOH HOH . F 4 HOH AAA 10 510 11 HOH HOH . F 4 HOH AAA 11 511 119 HOH HOH . F 4 HOH AAA 12 512 95 HOH HOH . F 4 HOH AAA 13 513 20 HOH HOH . F 4 HOH AAA 14 514 100 HOH HOH . F 4 HOH AAA 15 515 64 HOH HOH . F 4 HOH AAA 16 516 13 HOH HOH . F 4 HOH AAA 17 517 23 HOH HOH . F 4 HOH AAA 18 518 93 HOH HOH . F 4 HOH AAA 19 519 73 HOH HOH . F 4 HOH AAA 20 520 36 HOH HOH . F 4 HOH AAA 21 521 68 HOH HOH . F 4 HOH AAA 22 522 30 HOH HOH . F 4 HOH AAA 23 523 83 HOH HOH . F 4 HOH AAA 24 524 38 HOH HOH . F 4 HOH AAA 25 525 16 HOH HOH . F 4 HOH AAA 26 526 48 HOH HOH . F 4 HOH AAA 27 527 102 HOH HOH . F 4 HOH AAA 28 528 80 HOH HOH . F 4 HOH AAA 29 529 28 HOH HOH . F 4 HOH AAA 30 530 17 HOH HOH . F 4 HOH AAA 31 531 84 HOH HOH . F 4 HOH AAA 32 532 75 HOH HOH . F 4 HOH AAA 33 533 65 HOH HOH . F 4 HOH AAA 34 534 94 HOH HOH . F 4 HOH AAA 35 535 63 HOH HOH . F 4 HOH AAA 36 536 77 HOH HOH . F 4 HOH AAA 37 537 47 HOH HOH . F 4 HOH AAA 38 538 110 HOH HOH . F 4 HOH AAA 39 539 78 HOH HOH . F 4 HOH AAA 40 540 92 HOH HOH . F 4 HOH AAA 41 541 32 HOH HOH . F 4 HOH AAA 42 542 79 HOH HOH . F 4 HOH AAA 43 543 50 HOH HOH . F 4 HOH AAA 44 544 76 HOH HOH . F 4 HOH AAA 45 545 82 HOH HOH . F 4 HOH AAA 46 546 51 HOH HOH . F 4 HOH AAA 47 547 115 HOH HOH . F 4 HOH AAA 48 548 71 HOH HOH . F 4 HOH AAA 49 549 74 HOH HOH . G 4 HOH BBB 1 501 103 HOH HOH . G 4 HOH BBB 2 502 61 HOH HOH . G 4 HOH BBB 3 503 35 HOH HOH . G 4 HOH BBB 4 504 24 HOH HOH . G 4 HOH BBB 5 505 5 HOH HOH . G 4 HOH BBB 6 506 15 HOH HOH . G 4 HOH BBB 7 507 2 HOH HOH . G 4 HOH BBB 8 508 3 HOH HOH . G 4 HOH BBB 9 509 88 HOH HOH . G 4 HOH BBB 10 510 60 HOH HOH . G 4 HOH BBB 11 511 27 HOH HOH . G 4 HOH BBB 12 512 106 HOH HOH . G 4 HOH BBB 13 513 31 HOH HOH . G 4 HOH BBB 14 514 99 HOH HOH . G 4 HOH BBB 15 515 22 HOH HOH . G 4 HOH BBB 16 516 104 HOH HOH . G 4 HOH BBB 17 517 1 HOH HOH . G 4 HOH BBB 18 518 10 HOH HOH . G 4 HOH BBB 19 519 25 HOH HOH . G 4 HOH BBB 20 520 39 HOH HOH . G 4 HOH BBB 21 521 7 HOH HOH . G 4 HOH BBB 22 522 41 HOH HOH . G 4 HOH BBB 23 523 8 HOH HOH . G 4 HOH BBB 24 524 116 HOH HOH . G 4 HOH BBB 25 525 19 HOH HOH . G 4 HOH BBB 26 526 107 HOH HOH . G 4 HOH BBB 27 527 33 HOH HOH . G 4 HOH BBB 28 528 101 HOH HOH . G 4 HOH BBB 29 529 57 HOH HOH . G 4 HOH BBB 30 530 4 HOH HOH . G 4 HOH BBB 31 531 98 HOH HOH . G 4 HOH BBB 32 532 18 HOH HOH . G 4 HOH BBB 33 533 44 HOH HOH . G 4 HOH BBB 34 534 67 HOH HOH . G 4 HOH BBB 35 535 97 HOH HOH . G 4 HOH BBB 36 536 9 HOH HOH . G 4 HOH BBB 37 537 59 HOH HOH . G 4 HOH BBB 38 538 87 HOH HOH . G 4 HOH BBB 39 539 46 HOH HOH . G 4 HOH BBB 40 540 6 HOH HOH . G 4 HOH BBB 41 541 90 HOH HOH . G 4 HOH BBB 42 542 108 HOH HOH . G 4 HOH BBB 43 543 14 HOH HOH . G 4 HOH BBB 44 544 58 HOH HOH . G 4 HOH BBB 45 545 43 HOH HOH . G 4 HOH BBB 46 546 42 HOH HOH . G 4 HOH BBB 47 547 37 HOH HOH . G 4 HOH BBB 48 548 89 HOH HOH . G 4 HOH BBB 49 549 96 HOH HOH . G 4 HOH BBB 50 550 85 HOH HOH . G 4 HOH BBB 51 551 21 HOH HOH . G 4 HOH BBB 52 552 117 HOH HOH . G 4 HOH BBB 53 553 55 HOH HOH . G 4 HOH BBB 54 554 40 HOH HOH . G 4 HOH BBB 55 555 91 HOH HOH . G 4 HOH BBB 56 556 69 HOH HOH . G 4 HOH BBB 57 557 45 HOH HOH . G 4 HOH BBB 58 558 72 HOH HOH . G 4 HOH BBB 59 559 112 HOH HOH . G 4 HOH BBB 60 560 113 HOH HOH . G 4 HOH BBB 61 561 52 HOH HOH . G 4 HOH BBB 62 562 105 HOH HOH . G 4 HOH BBB 63 563 56 HOH HOH . G 4 HOH BBB 64 564 109 HOH HOH . G 4 HOH BBB 65 565 53 HOH HOH . G 4 HOH BBB 66 566 70 HOH HOH . G 4 HOH BBB 67 567 26 HOH HOH . G 4 HOH BBB 68 568 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 25.635 32.317 65.582 0 48.99 0 PG ATP 402 BBB 1 HETATM 2 O O1G ATP . . . E 3 25.419 32.136 67.066 0 48.99 0 O1G ATP 402 BBB 1 HETATM 3 O O2G ATP . . . E 3 25.481 33.752 65.141 0 48.99 0 O2G ATP 402 BBB 1 HETATM 4 O O3G ATP . . . E 3 26.923 31.692 65.101 0 48.99 0 O3G ATP 402 BBB 1 HETATM 5 P PB ATP . . . E 3 23.718 31.651 63.44 0 48.99 0 PB ATP 402 BBB 1 HETATM 6 O O1B ATP . . . E 3 24.37 32.761 62.683 0 48.99 0 O1B ATP 402 BBB 1 HETATM 7 O O2B ATP . . . E 3 23.59 30.304 62.81 0 48.99 0 O2B ATP 402 BBB 1 HETATM 8 O O3B ATP . . . E 3 24.45 31.495 64.856 0 48.99 0 O3B ATP 402 BBB 1 HETATM 9 P PA ATP . . . E 3 21.503 33.535 63.69 0 48.99 0 PA ATP 402 BBB 1 HETATM 10 O O1A ATP . . . E 3 21.832 34.047 62.326 0 48.99 0 O1A ATP 402 BBB 1 HETATM 11 O O2A ATP . . . E 3 21.774 34.42 64.862 0 48.99 0 O2A ATP 402 BBB 1 HETATM 12 O O3A ATP . . . E 3 22.268 32.143 63.906 0 48.99 0 O3A ATP 402 BBB 1 HETATM 13 O O5' ATP . . . E 3 19.971 33.061 63.727 0 48.99 0 O5' ATP 402 BBB 1 HETATM 14 C C5' ATP . . . E 3 18.97 34.01 64.175 0 48.99 0 C5' ATP 402 BBB 1 HETATM 15 C C4' ATP . . . E 3 17.721 33.854 63.343 0 48.99 0 C4' ATP 402 BBB 1 HETATM 16 O O4' ATP . . . E 3 17.439 32.44 63.17 0 48.99 0 O4' ATP 402 BBB 1 HETATM 17 C C3' ATP . . . E 3 16.441 34.458 63.937 0 48.99 0 C3' ATP 402 BBB 1 HETATM 18 O O3' ATP . . . E 3 16.223 35.78 63.461 0 48.99 0 O3' ATP 402 BBB 1 HETATM 19 C C2' ATP . . . E 3 15.361 33.5 63.431 0 48.99 0 C2' ATP 402 BBB 1 HETATM 20 O O2' ATP . . . E 3 14.956 33.812 62.117 0 48.99 0 O2' ATP 402 BBB 1 HETATM 21 C C1' ATP . . . E 3 16.099 32.168 63.51 0 48.99 0 C1' ATP 402 BBB 1 HETATM 22 N N9 ATP . . . E 3 16.073 31.575 64.842 0 48.99 0 N9 ATP 402 BBB 1 HETATM 23 C C8 ATP . . . E 3 16.699 32.037 65.97 0 48.99 0 C8 ATP 402 BBB 1 HETATM 24 N N7 ATP . . . E 3 16.47 31.282 67.02 0 48.99 0 N7 ATP 402 BBB 1 HETATM 25 C C5 ATP . . . E 3 15.646 30.266 66.551 0 48.99 0 C5 ATP 402 BBB 1 HETATM 26 C C6 ATP . . . E 3 15.056 29.15 67.175 0 48.99 0 C6 ATP 402 BBB 1 HETATM 27 N N6 ATP . . . E 3 15.206 28.855 68.463 0 48.99 0 N6 ATP 402 BBB 1 HETATM 28 N N1 ATP . . . E 3 14.291 28.341 66.406 0 48.99 0 N1 ATP 402 BBB 1 HETATM 29 C C2 ATP . . . E 3 14.143 28.642 65.11 0 48.99 0 C2 ATP 402 BBB 1 HETATM 30 N N3 ATP . . . E 3 14.644 29.661 64.417 0 48.99 0 N3 ATP 402 BBB 1 HETATM 31 C C4 ATP . . . E 3 15.396 30.443 65.207 0 48.99 0 C4 ATP 402 BBB 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #