data_7ZAB # _model_server_result.job_id 3OhGLBzEPqxd9ohST2_z4w _model_server_result.datetime_utc '2024-10-20 01:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 7ZAB # _exptl.entry_id 7ZAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZAB _cell.length_a 97.842 _cell.length_b 97.842 _cell.length_c 82.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_564 x,-y+1,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 97.842 -41.254 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 96 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 238 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 107 _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 249 _struct_conn.ptnr2_symmetry 6_564 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.327 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 268 n n C1 H11 MPD sing 269 n n C1 H12 MPD sing 270 n n C1 H13 MPD sing 271 n n C2 O2 MPD sing 272 n n C2 CM MPD sing 273 n n C2 C3 MPD sing 274 n n O2 HO2 MPD sing 275 n n CM HM1 MPD sing 276 n n CM HM2 MPD sing 277 n n CM HM3 MPD sing 278 n n C3 C4 MPD sing 279 n n C3 H31 MPD sing 280 n n C3 H32 MPD sing 281 n n C4 O4 MPD sing 282 n n C4 C5 MPD sing 283 n n C4 H4 MPD sing 284 n n O4 HO4 MPD sing 285 n n C5 H51 MPD sing 286 n n C5 H52 MPD sing 287 n n C5 H53 MPD sing 288 n n # _atom_sites.entry_id 7ZAB _atom_sites.fract_transf_matrix[1][1] 0.010221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD AAA 1 1001 1001 IOD IOD . C 3 CL AAA 1 1002 1002 CL CL . D 3 CL AAA 1 1003 1003 CL CL . E 3 CL AAA 1 1004 1004 CL CL . F 4 LI AAA 1 1005 1051 LI LI . G 5 GOL AAA 1 1006 1101 GOL GOL . H 6 MPD AAA 1 1007 1201 MPD MPD . I 7 EDO AAA 1 1008 1301 EDO EDO . J 7 EDO AAA 1 1009 1302 EDO EDO . K 7 EDO AAA 1 1010 1303 EDO EDO . L 7 EDO AAA 1 1011 1304 EDO EDO . M 7 EDO AAA 1 1012 1305 EDO EDO . N 7 EDO AAA 1 1013 1306 EDO EDO . O 8 DMS AAA 1 1014 1401 DMS DMS . P 9 HOH AAA 1 1101 2011 HOH HOH . P 9 HOH AAA 2 1102 2010 HOH HOH . P 9 HOH AAA 3 1103 2006 HOH HOH . P 9 HOH AAA 4 1104 2005 HOH HOH . P 9 HOH AAA 5 1105 2009 HOH HOH . P 9 HOH AAA 6 1106 2003 HOH HOH . P 9 HOH AAA 7 1107 2012 HOH HOH . P 9 HOH AAA 8 1108 2001 HOH HOH . P 9 HOH AAA 9 1109 2008 HOH HOH . P 9 HOH AAA 10 1110 2004 HOH HOH . P 9 HOH AAA 11 1111 2013 HOH HOH . P 9 HOH AAA 12 1112 2002 HOH HOH . P 9 HOH AAA 13 1113 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 6 20.443 61.141 -21.852 1 48.47 0 C1 MPD 1007 AAA 1 HETATM 2 C C2 MPD . . . H 6 20.558 61.31 -20.411 1 43.47 0 C2 MPD 1007 AAA 1 HETATM 3 O O2 MPD . . . H 6 19.69 60.272 -20.183 1 76.72 0 O2 MPD 1007 AAA 1 HETATM 4 C CM MPD . . . H 6 20.058 62.699 -19.999 1 68.55 0 CM MPD 1007 AAA 1 HETATM 5 C C3 MPD . . . H 6 21.938 60.858 -19.903 1 91.25 0 C3 MPD 1007 AAA 1 HETATM 6 C C4 MPD . . . H 6 22.482 60.708 -18.462 1 86.59 0 C4 MPD 1007 AAA 1 HETATM 7 O O4 MPD . . . H 6 21.824 59.637 -17.854 1 119.63 0 O4 MPD 1007 AAA 1 HETATM 8 C C5 MPD . . . H 6 23.959 60.438 -18.334 1 84.58 0 C5 MPD 1007 AAA 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #