data_7ZAF # _model_server_result.job_id 1ppeGJa0Wsf4H2knmxqdaA _model_server_result.datetime_utc '2024-10-20 03:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1014}' # _entry.id 7ZAF # _exptl.entry_id 7ZAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZAF _cell.length_a 135.34 _cell.length_b 135.34 _cell.length_c 81.659 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 135.34 0 -40.8295 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7ZAF _atom_sites.fract_transf_matrix[1][1] 0.007389 _atom_sites.fract_transf_matrix[1][2] 0.004266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD AAA 1 1001 1001 IOD IOD . C 3 CL AAA 1 1002 1101 CL CL . D 3 CL AAA 1 1003 1102 CL CL . E 4 EDO AAA 1 1004 1201 EDO EDO . F 4 EDO AAA 1 1005 1202 EDO EDO . G 4 EDO AAA 1 1006 1203 EDO EDO . H 4 EDO AAA 1 1007 1204 EDO EDO . I 4 EDO AAA 1 1008 1205 EDO EDO . J 4 EDO AAA 1 1009 1206 EDO EDO . K 4 EDO AAA 1 1010 1207 EDO EDO . L 4 EDO AAA 1 1011 1208 EDO EDO . M 4 EDO AAA 1 1012 1209 EDO EDO . N 5 GOL AAA 1 1013 1301 GOL GOL . O 5 GOL AAA 1 1014 1302 GOL GOL . P 6 HOH AAA 1 1101 2003 HOH HOH . P 6 HOH AAA 2 1102 2011 HOH HOH . P 6 HOH AAA 3 1103 2007 HOH HOH . P 6 HOH AAA 4 1104 2009 HOH HOH . P 6 HOH AAA 5 1105 2014 HOH HOH . P 6 HOH AAA 6 1106 2001 HOH HOH . P 6 HOH AAA 7 1107 2013 HOH HOH . P 6 HOH AAA 8 1108 2006 HOH HOH . P 6 HOH AAA 9 1109 2012 HOH HOH . P 6 HOH AAA 10 1110 2010 HOH HOH . P 6 HOH AAA 11 1111 2015 HOH HOH . P 6 HOH AAA 12 1112 2005 HOH HOH . P 6 HOH AAA 13 1113 2002 HOH HOH . P 6 HOH AAA 14 1114 2008 HOH HOH . P 6 HOH AAA 15 1115 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 5 64.127 -8.16 -12.203 1 106.95 0 C1 GOL 1014 AAA 1 HETATM 2 O O1 GOL . . . O 5 63.481 -8.415 -13.446 1 78.55 0 O1 GOL 1014 AAA 1 HETATM 3 C C2 GOL . . . O 5 64.429 -6.686 -12.001 1 122.51 0 C2 GOL 1014 AAA 1 HETATM 4 O O2 GOL . . . O 5 63.296 -5.977 -11.484 1 104.63 0 O2 GOL 1014 AAA 1 HETATM 5 C C3 GOL . . . O 5 65.727 -6.416 -11.248 1 126.23 0 C3 GOL 1014 AAA 1 HETATM 6 O O3 GOL . . . O 5 65.529 -6.007 -9.894 1 106.97 0 O3 GOL 1014 AAA 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #