data_7ZB0 # _model_server_result.job_id 8K7iKwhGCN1POKhUCox-UQ _model_server_result.datetime_utc '2024-11-12 20:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":801}' # _entry.id 7ZB0 # _exptl.entry_id 7ZB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.04 _cell.angle_beta 101.67 _cell.angle_gamma 93.24 _cell.entry_id 7ZB0 _cell.length_a 70.22 _cell.length_b 106.18 _cell.length_c 114.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,X 1 1 B,F,I,J,Y 2 1 C,G,K,L,M,N,O,P,Z 3 1 D,H,Q,R,S,T,U,V,W,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 L N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C MVA 5 E MVA 805 1_555 E N ILE 6 E ILE 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 E C ILE 6 E ILE 806 1_555 E N MVA 7 E MVA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale3 E C MVA 7 E MVA 807 1_555 E N MVA 8 E MVA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale4 E C MVA 8 E MVA 808 1_555 E N SAR 9 E SAR 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale5 F C TRP 4 F TRP 804 1_555 F N MVA 5 F MVA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 F C MVA 5 F MVA 805 1_555 F N ILE 6 F ILE 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 F C ILE 6 F ILE 806 1_555 F N MVA 7 F MVA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale8 F C MVA 7 F MVA 807 1_555 F N MVA 8 F MVA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale9 G C MVA 5 G MVA 805 1_555 G N ILE 6 G ILE 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale10 G C ILE 6 G ILE 806 1_555 G N MVA 7 G MVA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale11 G C MVA 7 G MVA 807 1_555 G N MVA 8 G MVA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale12 G C MVA 8 G MVA 808 1_555 G N SAR 9 G SAR 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale13 H C TRP 4 H TRP 804 1_555 H N MVA 5 H MVA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 H C MVA 5 H MVA 805 1_555 H N ILE 6 H ILE 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale15 H C ILE 6 H ILE 806 1_555 H N MVA 7 H MVA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale16 H C MVA 7 H MVA 807 1_555 H N MVA 8 H MVA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale17 H C MVA 8 H MVA 808 1_555 H N SAR 9 H SAR 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale18 H C SAR 9 H SAR 809 1_555 H N MVA 10 H MVA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 H C MVA 10 H MVA 810 1_555 H N IML 11 H IML 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? metalc ? metalc1 C O GLN 288 C GLN 288 1_555 N NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc2 C O ASP 311 C ASP 311 1_555 N NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 C O TYR 499 C TYR 499 1_555 O NA NA . C NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc4 C O GLY 500 C GLY 500 1_555 O NA NA . C NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc5 C O LEU 546 C LEU 546 1_555 P NA NA . C NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 C O ASN 581 C ASN 581 1_555 O NA NA . C NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc7 C O TYR 625 C TYR 625 1_555 P NA NA . C NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 C OH TYR 640 C TYR 640 1_555 P NA NA . C NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc9 D OG1 THR 481 D THR 481 1_555 W NA NA . D NA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc10 D O TYR 525 D TYR 525 1_555 W NA NA . D NA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc11 D O VAL 600 D VAL 600 1_555 V NA NA . D NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc12 D OG1 THR 602 D THR 602 1_555 V NA NA . D NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc13 D O LEU 658 D LEU 658 1_555 V NA NA . D NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 87 n n C1 C2 EDO sing 88 n n C1 H11 EDO sing 89 n n C1 H12 EDO sing 90 n n O1 HO1 EDO sing 91 n n C2 O2 EDO sing 92 n n C2 H21 EDO sing 93 n n C2 H22 EDO sing 94 n n O2 HO2 EDO sing 95 n n # _atom_sites.entry_id 7ZB0 _atom_sites.fract_transf_matrix[1][1] 0.014241 _atom_sites.fract_transf_matrix[1][2] 0.000806 _atom_sites.fract_transf_matrix[1][3] 0.003593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009433 _atom_sites.fract_transf_matrix[2][3] 0.004265 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 EDO B 1 801 6 EDO EDO . J 4 BCT B 1 802 8 BCT BCT . K 3 EDO C 1 806 3 EDO EDO . L 3 EDO C 1 801 5 EDO EDO . M 5 PEG C 1 802 9 PEG PEG . N 6 NA C 1 803 1 NA NA . O 6 NA C 1 804 5 NA NA . P 6 NA C 1 805 6 NA NA . Q 5 PEG D 1 807 7 PEG PEG . R 3 EDO D 1 801 1 EDO EDO . S 3 EDO D 1 802 2 EDO EDO . T 3 EDO D 1 803 4 EDO EDO . U 6 NA D 1 804 2 NA NA . V 6 NA D 1 805 3 NA NA . W 6 NA D 1 806 4 NA NA . X 7 HOH A 1 801 9 HOH HOH . X 7 HOH A 2 802 36 HOH HOH . X 7 HOH A 3 803 35 HOH HOH . X 7 HOH A 4 804 25 HOH HOH . X 7 HOH A 5 805 31 HOH HOH . X 7 HOH A 6 806 30 HOH HOH . X 7 HOH A 7 807 10 HOH HOH . Y 7 HOH B 1 901 15 HOH HOH . Y 7 HOH B 2 902 24 HOH HOH . Y 7 HOH B 3 903 3 HOH HOH . Y 7 HOH B 4 904 11 HOH HOH . Y 7 HOH B 5 905 46 HOH HOH . Y 7 HOH B 6 906 19 HOH HOH . Y 7 HOH B 7 907 18 HOH HOH . Y 7 HOH B 8 908 20 HOH HOH . Y 7 HOH B 9 909 34 HOH HOH . Y 7 HOH B 10 910 13 HOH HOH . Y 7 HOH B 11 911 1 HOH HOH . Y 7 HOH B 12 912 40 HOH HOH . Y 7 HOH B 13 913 26 HOH HOH . Y 7 HOH B 14 914 43 HOH HOH . Y 7 HOH B 15 915 29 HOH HOH . Y 7 HOH B 16 916 39 HOH HOH . Y 7 HOH B 17 917 50 HOH HOH . Y 7 HOH B 18 918 48 HOH HOH . Z 7 HOH C 1 901 38 HOH HOH . Z 7 HOH C 2 902 6 HOH HOH . Z 7 HOH C 3 903 4 HOH HOH . Z 7 HOH C 4 904 45 HOH HOH . Z 7 HOH C 5 905 44 HOH HOH . Z 7 HOH C 6 906 8 HOH HOH . Z 7 HOH C 7 907 47 HOH HOH . Z 7 HOH C 8 908 42 HOH HOH . Z 7 HOH C 9 909 22 HOH HOH . Z 7 HOH C 10 910 7 HOH HOH . Z 7 HOH C 11 911 32 HOH HOH . AA 7 HOH D 1 901 23 HOH HOH . AA 7 HOH D 2 902 53 HOH HOH . AA 7 HOH D 3 903 41 HOH HOH . AA 7 HOH D 4 904 33 HOH HOH . AA 7 HOH D 5 905 2 HOH HOH . AA 7 HOH D 6 906 52 HOH HOH . AA 7 HOH D 7 907 5 HOH HOH . AA 7 HOH D 8 908 51 HOH HOH . AA 7 HOH D 9 909 17 HOH HOH . AA 7 HOH D 10 910 28 HOH HOH . AA 7 HOH D 11 911 21 HOH HOH . AA 7 HOH D 12 912 12 HOH HOH . AA 7 HOH D 13 913 16 HOH HOH . AA 7 HOH D 14 914 37 HOH HOH . AA 7 HOH D 15 915 14 HOH HOH . AA 7 HOH D 16 916 27 HOH HOH . AA 7 HOH D 17 917 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 -22.89 5.388 14.021 1 74.97 ? C1 EDO 801 C 1 HETATM 2 O O1 EDO . . . L 3 -22.841 6.698 14.57 1 74.86 ? O1 EDO 801 C 1 HETATM 3 C C2 EDO . . . L 3 -22.067 5.239 12.789 1 75.78 ? C2 EDO 801 C 1 HETATM 4 O O2 EDO . . . L 3 -22.361 4.084 12.021 1 75.19 ? O2 EDO 801 C 1 # _model_server_stats.io_time_ms 166 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #