data_7ZB8 # _model_server_result.job_id QWvekcBUHWazyQgaDE5zzQ _model_server_result.datetime_utc '2025-01-28 03:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7ZB8 # _exptl.entry_id 7ZB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.22 _cell.angle_gamma 90 _cell.entry_id 7ZB8 _cell.length_a 122.482 _cell.length_b 81.289 _cell.length_c 63.701 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7ZB8 _atom_sites.fract_transf_matrix[1][1] 0.008164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS C 1 401 3 DMS DMS . D 2 DMS C 1 402 4 DMS DMS . E 2 DMS C 1 403 5 DMS DMS . F 2 DMS C 1 404 6 DMS DMS . G 3 HOH A 1 401 1 HOH HOH . G 3 HOH A 2 402 108 HOH HOH . G 3 HOH A 3 403 106 HOH HOH . G 3 HOH A 4 404 23 HOH HOH . G 3 HOH A 5 405 6 HOH HOH . G 3 HOH A 6 406 20 HOH HOH . G 3 HOH A 7 407 12 HOH HOH . G 3 HOH A 8 408 3 HOH HOH . G 3 HOH A 9 409 38 HOH HOH . G 3 HOH A 10 410 66 HOH HOH . G 3 HOH A 11 411 10 HOH HOH . G 3 HOH A 12 412 17 HOH HOH . G 3 HOH A 13 413 41 HOH HOH . G 3 HOH A 14 414 92 HOH HOH . G 3 HOH A 15 415 50 HOH HOH . G 3 HOH A 16 416 86 HOH HOH . G 3 HOH A 17 417 71 HOH HOH . G 3 HOH A 18 418 60 HOH HOH . G 3 HOH A 19 419 104 HOH HOH . G 3 HOH A 20 420 34 HOH HOH . G 3 HOH A 21 421 47 HOH HOH . G 3 HOH A 22 422 107 HOH HOH . H 3 HOH C 1 501 18 HOH HOH . H 3 HOH C 2 502 91 HOH HOH . H 3 HOH C 3 503 30 HOH HOH . H 3 HOH C 4 504 14 HOH HOH . H 3 HOH C 5 505 76 HOH HOH . H 3 HOH C 6 506 35 HOH HOH . H 3 HOH C 7 507 13 HOH HOH . H 3 HOH C 8 508 53 HOH HOH . H 3 HOH C 9 509 40 HOH HOH . H 3 HOH C 10 510 2 HOH HOH . H 3 HOH C 11 511 81 HOH HOH . H 3 HOH C 12 512 36 HOH HOH . H 3 HOH C 13 513 105 HOH HOH . H 3 HOH C 14 514 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 34.599 -5.08 17.859 1 88.31 ? S DMS 402 C 1 HETATM 2 O O DMS . . . D 2 33.599 -3.973 17.949 1 81.88 ? O DMS 402 C 1 HETATM 3 C C1 DMS . . . D 2 34.051 -6.297 16.63 1 95.44 ? C1 DMS 402 C 1 HETATM 4 C C2 DMS . . . D 2 34.522 -6.098 19.359 1 93.35 ? C2 DMS 402 C 1 HETATM 5 H H11 DMS . . . D 2 34.803 -7.031 16.5 1 114.53 ? H11 DMS 402 C 1 HETATM 6 H H12 DMS . . . D 2 33.869 -5.811 15.708 1 114.53 ? H12 DMS 402 C 1 HETATM 7 H H13 DMS . . . D 2 33.16 -6.761 16.966 1 114.53 ? H13 DMS 402 C 1 HETATM 8 H H21 DMS . . . D 2 35.234 -6.879 19.293 1 112.03 ? H21 DMS 402 C 1 HETATM 9 H H22 DMS . . . D 2 33.552 -6.511 19.457 1 112.03 ? H22 DMS 402 C 1 HETATM 10 H H23 DMS . . . D 2 34.736 -5.497 20.205 1 112.03 ? H23 DMS 402 C 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #