data_7ZBU # _model_server_result.job_id '_Hb8kOoXjEBujPCvNEUKnw' _model_server_result.datetime_utc '2024-10-19 10:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1309}' # _entry.id 7ZBU # _exptl.entry_id 7ZBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.694 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 15 1_555 A SG CYS 167 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 162 A CYS 131 1_555 A SG CYS 197 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 322 A CYS 291 1_555 A SG CYS 332 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 367 A CYS 336 1_555 A SG CYS 392 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 410 A CYS 379 1_555 A SG CYS 463 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 422 A CYS 391 1_555 A SG CYS 556 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 A SG CYS 511 A CYS 480 1_555 A SG CYS 519 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 569 A CYS 538 1_555 A SG CYS 621 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 648 A CYS 617 1_555 A SG CYS 680 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 693 A CYS 662 1_555 A SG CYS 702 A CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 B SG CYS 156 H CYS 156 1_555 B SG CYS 212 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 C SG CYS 136 L CYS 136 1_555 C SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 48 A ASN 17 1_555 F C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 92 A ASN 61 1_555 J C1 NAG . A NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 153 A ASN 122 1_555 G C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 180 A ASN 149 1_555 K C1 NAG . A NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 196 A ASN 165 1_555 H C1 NAG . A NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 A ND2 ASN 313 A ASN 282 1_555 I C1 NAG . A NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 A ND2 ASN 362 A ASN 331 1_555 E C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale8 A ND2 ASN 374 A ASN 343 1_555 D C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id 3Q9 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMC C2C 3Q9 sing 1 n n CBC CAC 3Q9 sing 2 n n C2C C1C 3Q9 sing 3 n n C2C C3C 3Q9 doub 4 n n O_C C1C 3Q9 doub 5 n n CAC C3C 3Q9 sing 6 n n C1C N_C 3Q9 sing 7 n n C3C C4C 3Q9 sing 8 n n N_C C4C 3Q9 doub 9 n n C4C CHD 3Q9 sing 10 n n CMB C2B 3Q9 sing 11 n n CHD C1D 3Q9 sing 12 n n CAB CBB 3Q9 sing 13 n n CAB C3B 3Q9 sing 14 n n C2B C3B 3Q9 doub 15 n n C2B C1B 3Q9 sing 16 n n C3B C4B 3Q9 sing 17 n n C1D N_D 3Q9 sing 18 n y C1D C2D 3Q9 doub 19 n y CHB C1B 3Q9 sing 20 n n CHB C4A 3Q9 sing 21 n n C1B N_B 3Q9 doub 22 n n N_D C4D 3Q9 sing 23 n y CMD C2D 3Q9 sing 24 n n C2D C3D 3Q9 sing 25 n y N_A C4A 3Q9 sing 26 n y N_A C1A 3Q9 sing 27 n y C4B N_B 3Q9 sing 28 n n C4B O_B 3Q9 doub 29 n n C4A C3A 3Q9 doub 30 n y C4D C3D 3Q9 doub 31 n y C4D CHA 3Q9 sing 32 n n C3D CAD 3Q9 sing 33 n n C1A CHA 3Q9 sing 34 n n C1A C2A 3Q9 doub 35 n y C3A C2A 3Q9 sing 36 n y C3A CMA 3Q9 sing 37 n n CAD CBD 3Q9 sing 38 n n C2A CAA 3Q9 sing 39 n n CBD CGD 3Q9 sing 40 n n CAA CBA 3Q9 sing 41 n n CGD O2D 3Q9 doub 42 n n CGD O1D 3Q9 sing 43 n n CBA CGA 3Q9 sing 44 n n O2A CGA 3Q9 doub 45 n n CGA O1A 3Q9 sing 46 n n CBC H1 3Q9 sing 47 n n CBC H2 3Q9 sing 48 n n CBC H3 3Q9 sing 49 n n CAC H4 3Q9 sing 50 n n CAC H5 3Q9 sing 51 n n CMC H6 3Q9 sing 52 n n CMC H7 3Q9 sing 53 n n CMC H8 3Q9 sing 54 n n CHD H9 3Q9 sing 55 n n CHD H10 3Q9 sing 56 n n N_D H11 3Q9 sing 57 n n CMD H12 3Q9 sing 58 n n CMD H13 3Q9 sing 59 n n CMD H14 3Q9 sing 60 n n CAD H15 3Q9 sing 61 n n CAD H16 3Q9 sing 62 n n CBD H17 3Q9 sing 63 n n CBD H18 3Q9 sing 64 n n O1D H19 3Q9 sing 65 n n CHA H20 3Q9 sing 66 n n CHA H21 3Q9 sing 67 n n N_A H22 3Q9 sing 68 n n CAA H23 3Q9 sing 69 n n CAA H24 3Q9 sing 70 n n CBA H25 3Q9 sing 71 n n CBA H26 3Q9 sing 72 n n O1A H27 3Q9 sing 73 n n CMA H28 3Q9 sing 74 n n CMA H29 3Q9 sing 75 n n CMA H30 3Q9 sing 76 n n CHB H31 3Q9 sing 77 n n CHB H32 3Q9 sing 78 n n CMB H33 3Q9 sing 79 n n CMB H34 3Q9 sing 80 n n CMB H35 3Q9 sing 81 n n CAB H36 3Q9 sing 82 n n CAB H37 3Q9 sing 83 n n CBB H38 3Q9 sing 84 n n CBB H39 3Q9 sing 85 n n CBB H40 3Q9 sing 86 n n # _atom_sites.entry_id 7ZBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1301 701 NAG NAG . E 4 NAG A 1 1302 702 NAG NAG . F 4 NAG A 1 1303 1326 NAG NAG . G 4 NAG A 1 1304 1328 NAG NAG . H 4 NAG A 1 1305 1330 NAG NAG . I 4 NAG A 1 1306 1332 NAG NAG . J 4 NAG A 1 1307 1324 NAG NAG . K 4 NAG A 1 1308 1305 NAG NAG . L 5 3Q9 A 1 1309 1301 3Q9 BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBC 3Q9 . . . L 5 180.815 181.352 236.261 1 120.82 ? CBC 3Q9 1309 A 1 HETATM 2 C CAC 3Q9 . . . L 5 181.556 181.82 237.231 1 120.82 ? CAC 3Q9 1309 A 1 HETATM 3 C C3C 3Q9 . . . L 5 181.341 181.714 238.676 1 120.82 ? C3C 3Q9 1309 A 1 HETATM 4 C C2C 3Q9 . . . L 5 180.215 182.016 239.395 1 120.82 ? C2C 3Q9 1309 A 1 HETATM 5 C CMC 3Q9 . . . L 5 178.888 182.515 238.91 1 120.82 ? CMC 3Q9 1309 A 1 HETATM 6 C C1C 3Q9 . . . L 5 180.475 181.764 240.818 1 120.82 ? C1C 3Q9 1309 A 1 HETATM 7 O O_C 3Q9 . . . L 5 179.707 181.925 241.762 1 120.82 ? O_C 3Q9 1309 A 1 HETATM 8 N N_C 3Q9 . . . L 5 181.765 181.305 240.919 1 120.82 ? N_C 3Q9 1309 A 1 HETATM 9 C C4C 3Q9 . . . L 5 182.358 181.245 239.679 1 120.82 ? C4C 3Q9 1309 A 1 HETATM 10 C CHD 3Q9 . . . L 5 183.648 180.842 239.447 1 120.82 ? CHD 3Q9 1309 A 1 HETATM 11 C C1D 3Q9 . . . L 5 184.689 180.978 240.379 1 120.82 ? C1D 3Q9 1309 A 1 HETATM 12 N N_D 3Q9 . . . L 5 184.499 181.397 241.655 1 120.82 ? N_D 3Q9 1309 A 1 HETATM 13 C C2D 3Q9 . . . L 5 186.099 180.749 240.111 1 120.82 ? C2D 3Q9 1309 A 1 HETATM 14 C CMD 3Q9 . . . L 5 186.673 180.286 238.806 1 120.82 ? CMD 3Q9 1309 A 1 HETATM 15 C C3D 3Q9 . . . L 5 186.767 181.056 241.274 1 120.82 ? C3D 3Q9 1309 A 1 HETATM 16 C CAD 3Q9 . . . L 5 188.252 180.976 241.501 1 120.82 ? CAD 3Q9 1309 A 1 HETATM 17 C CBD 3Q9 . . . L 5 188.995 182.163 240.915 1 120.82 ? CBD 3Q9 1309 A 1 HETATM 18 C CGD 3Q9 . . . L 5 190.362 182.359 241.503 1 120.82 ? CGD 3Q9 1309 A 1 HETATM 19 O O1D 3Q9 . . . L 5 190.607 182.176 242.677 1 120.82 ? O1D 3Q9 1309 A 1 HETATM 20 O O2D 3Q9 . . . L 5 191.254 182.752 240.632 1 120.82 ? O2D 3Q9 1309 A 1 HETATM 21 C C4D 3Q9 . . . L 5 185.754 181.468 242.232 1 120.82 ? C4D 3Q9 1309 A 1 HETATM 22 C CHA 3Q9 . . . L 5 185.979 181.934 243.508 1 120.82 ? CHA 3Q9 1309 A 1 HETATM 23 C C1A 3Q9 . . . L 5 185.066 182.719 244.236 1 120.82 ? C1A 3Q9 1309 A 1 HETATM 24 N N_A 3Q9 . . . L 5 183.895 183.198 243.703 1 120.82 ? N_A 3Q9 1309 A 1 HETATM 25 C C2A 3Q9 . . . L 5 185.13 183.162 245.583 1 120.82 ? C2A 3Q9 1309 A 1 HETATM 26 C CAA 3Q9 . . . L 5 186.227 182.881 246.573 1 120.82 ? CAA 3Q9 1309 A 1 HETATM 27 C CBA 3Q9 . . . L 5 187.558 183.507 246.187 1 120.82 ? CBA 3Q9 1309 A 1 HETATM 28 C CGA 3Q9 . . . L 5 187.602 184.995 246.385 1 120.82 ? CGA 3Q9 1309 A 1 HETATM 29 O O1A 3Q9 . . . L 5 187.115 185.549 247.349 1 120.82 ? O1A 3Q9 1309 A 1 HETATM 30 O O2A 3Q9 . . . L 5 188.22 185.631 245.424 1 120.82 ? O2A 3Q9 1309 A 1 HETATM 31 C C3A 3Q9 . . . L 5 183.973 183.912 245.835 1 120.82 ? C3A 3Q9 1309 A 1 HETATM 32 C CMA 3Q9 . . . L 5 183.61 184.567 247.134 1 120.82 ? CMA 3Q9 1309 A 1 HETATM 33 C C4A 3Q9 . . . L 5 183.21 183.93 244.643 1 120.82 ? C4A 3Q9 1309 A 1 HETATM 34 C CHB 3Q9 . . . L 5 181.99 184.569 244.383 1 120.82 ? CHB 3Q9 1309 A 1 HETATM 35 C C1B 3Q9 . . . L 5 181.386 184.757 243.169 1 120.82 ? C1B 3Q9 1309 A 1 HETATM 36 C C2B 3Q9 . . . L 5 179.977 184.978 242.914 1 120.82 ? C2B 3Q9 1309 A 1 HETATM 37 C CMB 3Q9 . . . L 5 178.922 184.979 243.98 1 120.82 ? CMB 3Q9 1309 A 1 HETATM 38 N N_B 3Q9 . . . L 5 182.022 184.783 241.949 1 120.82 ? N_B 3Q9 1309 A 1 HETATM 39 C C4B 3Q9 . . . L 5 181.125 185.014 240.933 1 120.82 ? C4B 3Q9 1309 A 1 HETATM 40 O O_B 3Q9 . . . L 5 181.415 185.083 239.739 1 120.82 ? O_B 3Q9 1309 A 1 HETATM 41 C C3B 3Q9 . . . L 5 179.808 185.145 241.566 1 120.82 ? C3B 3Q9 1309 A 1 HETATM 42 C CAB 3Q9 . . . L 5 178.579 185.431 240.825 1 120.82 ? CAB 3Q9 1309 A 1 HETATM 43 C CBB 3Q9 . . . L 5 178.437 186.183 239.767 1 120.82 ? CBB 3Q9 1309 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #