data_7ZBV # _model_server_result.job_id Yw_q3UNNNThcCDzL_YYwRA _model_server_result.datetime_utc '2024-10-10 07:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7ZBV # _exptl.entry_id 7ZBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS-HYDROXYMETHYL-METHYL-AMMONIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZBV _cell.length_a 60.267 _cell.length_b 77.787 _cell.length_c 97.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 123 A GLU 498 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc2 A NE2 HIS 148 A HIS 523 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A NE2 HIS 152 A HIS 527 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A O ALA 156 A ALA 531 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A O VAL 160 A VAL 535 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc6 A O GLY 162 A GLY 537 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 A OE1 GLU 180 A GLU 555 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 B ZN ZN . A ZN 801 1_555 E O3 ITO . A ITO 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc9 F CA CA . A CA 805 1_555 G O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc10 F CA CA . A CA 805 1_555 G O HOH . A HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id 144 _chem_comp.mon_nstd_flag . _chem_comp.name TRIS-HYDROXYMETHYL-METHYL-AMMONIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N 144 sing 1 n n C1 H11 144 sing 2 n n C1 H12 144 sing 3 n n C1 H13 144 sing 4 n n N C2 144 sing 5 n n N C3 144 sing 6 n n N C4 144 sing 7 n n C2 O2 144 sing 8 n n C2 H21 144 sing 9 n n C2 H22 144 sing 10 n n O2 HO2 144 sing 11 n n C3 O3 144 sing 12 n n C3 H31 144 sing 13 n n C3 H32 144 sing 14 n n O3 HO3 144 sing 15 n n C4 O4 144 sing 16 n n C4 H41 144 sing 17 n n C4 H42 144 sing 18 n n O4 HO4 144 sing 19 n n # _atom_sites.entry_id 7ZBV _atom_sites.fract_transf_matrix[1][1] 0.016593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1791 ZN ZN . C 3 ITO A 1 802 1792 ITO XXX . D 4 144 A 1 803 1793 144 144 . E 3 ITO A 1 804 1794 ITO XXX . F 5 CA A 1 805 1 CA CA . G 6 HOH A 1 901 14 HOH HOH . G 6 HOH A 2 902 58 HOH HOH . G 6 HOH A 3 903 32 HOH HOH . G 6 HOH A 4 904 61 HOH HOH . G 6 HOH A 5 905 59 HOH HOH . G 6 HOH A 6 906 31 HOH HOH . G 6 HOH A 7 907 28 HOH HOH . G 6 HOH A 8 908 66 HOH HOH . G 6 HOH A 9 909 23 HOH HOH . G 6 HOH A 10 910 11 HOH HOH . G 6 HOH A 11 911 16 HOH HOH . G 6 HOH A 12 912 74 HOH HOH . G 6 HOH A 13 913 70 HOH HOH . G 6 HOH A 14 914 55 HOH HOH . G 6 HOH A 15 915 68 HOH HOH . G 6 HOH A 16 916 80 HOH HOH . G 6 HOH A 17 917 39 HOH HOH . G 6 HOH A 18 918 81 HOH HOH . G 6 HOH A 19 919 33 HOH HOH . G 6 HOH A 20 920 8 HOH HOH . G 6 HOH A 21 921 37 HOH HOH . G 6 HOH A 22 922 60 HOH HOH . G 6 HOH A 23 923 25 HOH HOH . G 6 HOH A 24 924 50 HOH HOH . G 6 HOH A 25 925 54 HOH HOH . G 6 HOH A 26 926 5 HOH HOH . G 6 HOH A 27 927 9 HOH HOH . G 6 HOH A 28 928 27 HOH HOH . G 6 HOH A 29 929 20 HOH HOH . G 6 HOH A 30 930 45 HOH HOH . G 6 HOH A 31 931 73 HOH HOH . G 6 HOH A 32 932 76 HOH HOH . G 6 HOH A 33 933 18 HOH HOH . G 6 HOH A 34 934 38 HOH HOH . G 6 HOH A 35 935 64 HOH HOH . G 6 HOH A 36 936 1 HOH HOH . G 6 HOH A 37 937 57 HOH HOH . G 6 HOH A 38 938 29 HOH HOH . G 6 HOH A 39 939 72 HOH HOH . G 6 HOH A 40 940 19 HOH HOH . G 6 HOH A 41 941 6 HOH HOH . G 6 HOH A 42 942 30 HOH HOH . G 6 HOH A 43 943 3 HOH HOH . G 6 HOH A 44 944 13 HOH HOH . G 6 HOH A 45 945 82 HOH HOH . G 6 HOH A 46 946 47 HOH HOH . G 6 HOH A 47 947 43 HOH HOH . G 6 HOH A 48 948 40 HOH HOH . G 6 HOH A 49 949 36 HOH HOH . G 6 HOH A 50 950 63 HOH HOH . G 6 HOH A 51 951 35 HOH HOH . G 6 HOH A 52 952 48 HOH HOH . G 6 HOH A 53 953 24 HOH HOH . G 6 HOH A 54 954 7 HOH HOH . G 6 HOH A 55 955 77 HOH HOH . G 6 HOH A 56 956 41 HOH HOH . G 6 HOH A 57 957 34 HOH HOH . G 6 HOH A 58 958 17 HOH HOH . G 6 HOH A 59 959 71 HOH HOH . G 6 HOH A 60 960 46 HOH HOH . G 6 HOH A 61 961 21 HOH HOH . G 6 HOH A 62 962 62 HOH HOH . G 6 HOH A 63 963 56 HOH HOH . G 6 HOH A 64 964 2 HOH HOH . G 6 HOH A 65 965 69 HOH HOH . G 6 HOH A 66 966 67 HOH HOH . G 6 HOH A 67 967 49 HOH HOH . G 6 HOH A 68 968 78 HOH HOH . G 6 HOH A 69 969 79 HOH HOH . G 6 HOH A 70 970 42 HOH HOH . G 6 HOH A 71 971 51 HOH HOH . G 6 HOH A 72 972 44 HOH HOH . G 6 HOH A 73 973 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 144 . . . D 4 3.758 14.227 3.325 1 31 ? C1 144 803 A 1 HETATM 2 N N 144 . . . D 4 4.078 13.215 2.302 1 37.75 ? N 144 803 A 1 HETATM 3 C C2 144 . . . D 4 3.253 13.578 0.97 1 39.21 ? C2 144 803 A 1 HETATM 4 O O2 144 . . . D 4 3.528 12.628 -0.044 1 39.54 ? O2 144 803 A 1 HETATM 5 C C3 144 . . . D 4 3.491 11.838 2.905 1 26.9 ? C3 144 803 A 1 HETATM 6 O O3 144 . . . D 4 2.113 11.932 2.932 1 24.83 ? O3 144 803 A 1 HETATM 7 C C4 144 . . . D 4 5.671 13.119 2.058 1 36.41 ? C4 144 803 A 1 HETATM 8 O O4 144 . . . D 4 6.34 12.794 3.231 1 31.47 ? O4 144 803 A 1 HETATM 9 H H11 144 . . . D 4 4.727 14.695 3.558 1 37.27 ? H11 144 803 A 1 HETATM 10 H H12 144 . . . D 4 3.042 14.9 2.828 1 37.27 ? H12 144 803 A 1 HETATM 11 H H13 144 . . . D 4 3.327 13.647 4.156 1 37.27 ? H13 144 803 A 1 HETATM 12 H H21 144 . . . D 4 3.626 14.576 0.706 1 47.12 ? H21 144 803 A 1 HETATM 13 H H22 144 . . . D 4 2.207 13.529 1.301 1 47.12 ? H22 144 803 A 1 HETATM 14 H HO2 144 . . . D 4 3.096 13 -0.867 1 47.51 ? HO2 144 803 A 1 HETATM 15 H H31 144 . . . D 4 3.903 11.033 2.267 1 32.35 ? H31 144 803 A 1 HETATM 16 H H32 144 . . . D 4 3.981 11.711 3.89 1 32.35 ? H32 144 803 A 1 HETATM 17 H HO3 144 . . . D 4 1.773 11.177 3.429 1 29.86 ? HO3 144 803 A 1 HETATM 18 H H41 144 . . . D 4 5.847 14.126 1.659 1 43.76 ? H41 144 803 A 1 HETATM 19 H H42 144 . . . D 4 5.68 12.361 1.265 1 43.76 ? H42 144 803 A 1 HETATM 20 H HO4 144 . . . D 4 7.333 12.681 3.077 1 37.83 ? HO4 144 803 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #