data_7ZCW # _model_server_result.job_id zBxjDJoglhiNH6hertDehg _model_server_result.datetime_utc '2024-11-25 18:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 7ZCW # _exptl.entry_id 7ZCW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZCW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O1G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc2 I O2B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 K O2G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc4 K O3G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 K O2B G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 M O1G GTP . E GTP 501 1_555 N MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc7 O O3G G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 O O2B G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc9 G OE2 GLU 69 G GLU 69 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 Q O3G G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc11 Q O2B G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc12 S O3G G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc13 S O2B G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 181 n n PG O2G GTP sing 182 n n PG O3G GTP sing 183 n n PG O3B GTP sing 184 n n O2G HOG2 GTP sing 185 n n O3G HOG3 GTP sing 186 n n O3B PB GTP sing 187 n n PB O1B GTP doub 188 n n PB O2B GTP sing 189 n n PB O3A GTP sing 190 n n O2B HOB2 GTP sing 191 n n O3A PA GTP sing 192 n n PA O1A GTP doub 193 n n PA O2A GTP sing 194 n n PA O5' GTP sing 195 n n O2A HOA2 GTP sing 196 n n O5' C5' GTP sing 197 n n C5' C4' GTP sing 198 n n C5' H5' GTP sing 199 n n C5' "H5''" GTP sing 200 n n C4' O4' GTP sing 201 n n C4' C3' GTP sing 202 n n C4' H4' GTP sing 203 n n O4' C1' GTP sing 204 n n C3' O3' GTP sing 205 n n C3' C2' GTP sing 206 n n C3' H3' GTP sing 207 n n O3' HO3' GTP sing 208 n n C2' O2' GTP sing 209 n n C2' C1' GTP sing 210 n n C2' H2' GTP sing 211 n n O2' HO2' GTP sing 212 n n C1' N9 GTP sing 213 n n C1' H1' GTP sing 214 n n N9 C8 GTP sing 215 n y N9 C4 GTP sing 216 n y C8 N7 GTP doub 217 n y C8 H8 GTP sing 218 n n N7 C5 GTP sing 219 n y C5 C6 GTP sing 220 n n C5 C4 GTP doub 221 n y C6 O6 GTP doub 222 n n C6 N1 GTP sing 223 n n N1 C2 GTP sing 224 n n N1 HN1 GTP sing 225 n n C2 N2 GTP sing 226 n n C2 N3 GTP doub 227 n n N2 HN21 GTP sing 228 n n N2 HN22 GTP sing 229 n n N3 C4 GTP sing 230 n n # _atom_sites.entry_id 7ZCW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GTP A 1 501 501 GTP GTP . J 6 MG A 1 502 502 MG MG . K 7 G2P B 1 501 502 G2P G2P . L 6 MG B 1 502 503 MG MG . M 5 GTP E 1 501 501 GTP GTP . N 6 MG E 1 502 502 MG MG . O 7 G2P F 1 501 502 G2P G2P . P 6 MG F 1 502 503 MG MG . Q 7 G2P G 1 501 502 G2P G2P . R 6 MG G 1 502 503 MG MG . S 7 G2P H 1 501 502 G2P G2P . T 6 MG H 1 502 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 5 81.572 53.323 65.404 1 54.87 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . I 5 82.915 52.903 64.869 1 54.87 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . I 5 80.548 52.297 65.018 1 54.87 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . I 5 81.177 54.657 64.836 1 54.87 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . I 5 81.655 53.429 67 1 54.87 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . I 5 82.869 54.239 67.652 1 54.87 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . I 5 82.951 53.929 69.118 1 54.87 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . I 5 84.162 53.926 66.953 1 54.87 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . I 5 82.476 55.781 67.483 1 54.87 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . I 5 83.44 56.896 68.115 1 54.87 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . I 5 83.782 56.514 69.527 1 54.87 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . I 5 84.686 57.057 67.287 1 54.87 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . I 5 82.56 58.237 68.098 1 54.87 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . I 5 83.107 59.446 67.632 1 54.87 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . I 5 83.601 60.293 68.793 1 54.87 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . I 5 84.581 59.607 69.538 1 54.87 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . I 5 84.261 61.567 68.312 1 54.87 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . I 5 83.386 62.662 68.445 1 54.87 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . I 5 85.484 61.746 69.188 1 54.87 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . I 5 85.354 62.947 69.913 1 54.87 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . I 5 85.528 60.511 70.075 1 54.87 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . I 5 86.86 59.88 70.099 1 54.87 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . I 5 87.344 58.984 69.191 1 54.87 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . I 5 88.585 58.615 69.572 1 54.87 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . I 5 88.897 59.248 70.718 1 54.87 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . I 5 90.027 59.227 71.524 1 54.87 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . I 5 90.989 58.527 71.227 1 54.87 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . I 5 90.072 59.994 72.662 1 54.87 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . I 5 88.993 60.778 72.991 1 54.87 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . I 5 89.035 61.52 74.088 1 54.87 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . I 5 87.874 60.794 72.186 1 54.87 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . I 5 87.819 60.043 71.064 1 54.87 ? C4 GTP 501 A 1 HETATM 33 H H4' GTP . . . I 5 82.755 60.55 69.431 1 54.87 ? H4' GTP 501 A 1 HETATM 34 H H3' GTP . . . I 5 84.571 61.445 67.274 1 54.87 ? H3' GTP 501 A 1 HETATM 35 H H2' GTP . . . I 5 86.375 61.772 68.561 1 54.87 ? H2' GTP 501 A 1 HETATM 36 H HO2' GTP . . . I 5 84.859 62.799 70.745 1 54.87 ? HO2' GTP 501 A 1 HETATM 37 H H1' GTP . . . I 5 85.238 60.772 71.092 1 54.87 ? H1' GTP 501 A 1 HETATM 38 H H8 GTP . . . I 5 86.826 58.643 68.294 1 54.87 ? H8 GTP 501 A 1 HETATM 39 H HN1 GTP . . . I 5 90.862 59.888 73.331 1 54.87 ? HN1 GTP 501 A 1 HETATM 40 H HN21 GTP . . . I 5 88.238 62.096 74.342 1 54.87 ? HN21 GTP 501 A 1 HETATM 41 H HN22 GTP . . . I 5 89.855 61.498 74.685 1 54.87 ? HN22 GTP 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #