data_7ZCW # _model_server_result.job_id ewbG-2FNr9vRDxKVtPqHdQ _model_server_result.datetime_utc '2024-11-29 08:02:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 7ZCW # _exptl.entry_id 7ZCW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 521.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZCW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 O N N ? 7 Q N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O1G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc2 I O2B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 K O2G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc4 K O3G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 K O2B G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 M O1G GTP . E GTP 501 1_555 N MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc7 O O3G G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 O O2B G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc9 G OE2 GLU 69 G GLU 69 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 Q O3G G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc11 Q O2B G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc12 S O3G G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc13 S O2B G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id G2P _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G G2P sing 83 n n PG O2G G2P doub 84 n n PG O3G G2P sing 85 n n PG O3B G2P sing 86 n n O3B PB G2P sing 87 n n PB O1B G2P sing 88 n n PB O2B G2P doub 89 n n PB C3A G2P sing 90 n n C3A PA G2P sing 91 n n C3A H3A1 G2P sing 92 n n C3A H3A2 G2P sing 93 n n PA O1A G2P sing 94 n n PA O2A G2P doub 95 n n PA O5' G2P sing 96 n n O5' C5' G2P sing 97 n n C5' C4' G2P sing 98 n n C5' "H5'1" G2P sing 99 n n C5' "H5'2" G2P sing 100 n n C4' O4' G2P sing 101 n n C4' C3' G2P sing 102 n n C4' H4' G2P sing 103 n n O4' C1' G2P sing 104 n n C3' O3' G2P sing 105 n n C3' C2' G2P sing 106 n n C3' H3' G2P sing 107 n n O3' HA G2P sing 108 n n C2' O2' G2P sing 109 n n C2' C1' G2P sing 110 n n C2' H2' G2P sing 111 n n O2' HB G2P sing 112 n n C1' N9 G2P sing 113 n n C1' H1' G2P sing 114 n n N9 C8 G2P sing 115 n y N9 C4 G2P sing 116 n y C8 N7 G2P doub 117 n y C8 H8 G2P sing 118 n n N7 C5 G2P sing 119 n y C5 C6 G2P sing 120 n y C5 C4 G2P doub 121 n y C6 O6 G2P doub 122 n n C6 N1 G2P sing 123 n y N1 C2 G2P sing 124 n y N1 H1 G2P sing 125 n n C2 N2 G2P sing 126 n n C2 N3 G2P doub 127 n y N2 H2N1 G2P sing 128 n n N2 H2N2 G2P sing 129 n n N3 C4 G2P sing 130 n y HO1 O1G G2P sing 131 n n HO2 O3G G2P sing 132 n n HO3 O1A G2P sing 133 n n HO4 O1B G2P sing 134 n n # _atom_sites.entry_id 7ZCW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GTP A 1 501 501 GTP GTP . J 6 MG A 1 502 502 MG MG . K 7 G2P B 1 501 502 G2P G2P . L 6 MG B 1 502 503 MG MG . M 5 GTP E 1 501 501 GTP GTP . N 6 MG E 1 502 502 MG MG . O 7 G2P F 1 501 502 G2P G2P . P 6 MG F 1 502 503 MG MG . Q 7 G2P G 1 501 502 G2P G2P . R 6 MG G 1 502 503 MG MG . S 7 G2P H 1 501 502 G2P G2P . T 6 MG H 1 502 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG G2P . . . K 7 82.048 52.65 22.885 1 57.71 ? PG G2P 501 B 1 HETATM 2 O O1G G2P . . . K 7 80.906 52.307 21.968 1 57.71 ? O1G G2P 501 B 1 HETATM 3 O O2G G2P . . . K 7 83.018 53.579 22.202 1 57.71 ? O2G G2P 501 B 1 HETATM 4 O O3G G2P . . . K 7 82.778 51.392 23.274 1 57.71 ? O3G G2P 501 B 1 HETATM 5 O O3B G2P . . . K 7 81.467 53.383 24.239 1 57.71 ? O3B G2P 501 B 1 HETATM 6 P PB G2P . . . K 7 82.511 53.876 25.41 1 57.71 ? PB G2P 501 B 1 HETATM 7 O O1B G2P . . . K 7 82.052 53.37 26.75 1 57.71 ? O1B G2P 501 B 1 HETATM 8 O O2B G2P . . . K 7 83.867 53.306 25.089 1 57.71 ? O2B G2P 501 B 1 HETATM 9 C C3A G2P . . . K 7 82.635 55.728 25.452 1 57.71 ? C3A G2P 501 B 1 HETATM 10 P PA G2P . . . K 7 84.386 56.111 25.955 1 57.71 ? PA G2P 501 B 1 HETATM 11 O O1A G2P . . . K 7 84.83 55.083 26.964 1 57.71 ? O1A G2P 501 B 1 HETATM 12 O O2A G2P . . . K 7 85.296 56.061 24.755 1 57.71 ? O2A G2P 501 B 1 HETATM 13 O O5' G2P . . . K 7 84.468 57.602 26.654 1 57.71 ? O5' G2P 501 B 1 HETATM 14 C C5' G2P . . . K 7 83.886 58.715 26.029 1 57.71 ? C5' G2P 501 B 1 HETATM 15 C C4' G2P . . . K 7 84.434 59.909 26.732 1 57.71 ? C4' G2P 501 B 1 HETATM 16 O O4' G2P . . . K 7 85.27 59.475 27.625 1 57.71 ? O4' G2P 501 B 1 HETATM 17 C C3' G2P . . . K 7 85.313 60.884 25.708 1 57.71 ? C3' G2P 501 B 1 HETATM 18 O O3' G2P . . . K 7 84.47 62.023 25.295 1 57.71 ? O3' G2P 501 B 1 HETATM 19 C C2' G2P . . . K 7 86.301 61.311 26.33 1 57.71 ? C2' G2P 501 B 1 HETATM 20 O O2' G2P . . . K 7 86.146 62.792 26.525 1 57.71 ? O2' G2P 501 B 1 HETATM 21 C C1' G2P . . . K 7 86.278 60.581 27.77 1 57.71 ? C1' G2P 501 B 1 HETATM 22 N N9 G2P . . . K 7 87.436 60.103 28.233 1 57.71 ? N9 G2P 501 B 1 HETATM 23 C C8 G2P . . . K 7 87.708 59.126 27.351 1 57.71 ? C8 G2P 501 B 1 HETATM 24 N N7 G2P . . . K 7 88.858 58.548 27.713 1 57.71 ? N7 G2P 501 B 1 HETATM 25 C C5 G2P . . . K 7 89.292 59.143 28.828 1 57.71 ? C5 G2P 501 B 1 HETATM 26 C C6 G2P . . . K 7 90.4 58.942 29.622 1 57.71 ? C6 G2P 501 B 1 HETATM 27 O O6 G2P . . . K 7 91.185 58.107 29.343 1 57.71 ? O6 G2P 501 B 1 HETATM 28 N N1 G2P . . . K 7 90.599 59.688 30.692 1 57.71 ? N1 G2P 501 B 1 HETATM 29 C C2 G2P . . . K 7 89.708 60.648 31.012 1 57.71 ? C2 G2P 501 B 1 HETATM 30 N N2 G2P . . . K 7 90.008 61.413 32.202 1 57.71 ? N2 G2P 501 B 1 HETATM 31 N N3 G2P . . . K 7 88.62 60.844 30.238 1 57.71 ? N3 G2P 501 B 1 HETATM 32 C C4 G2P . . . K 7 88.416 60.09 29.147 1 57.71 ? C4 G2P 501 B 1 HETATM 33 H H3A1 G2P . . . K 7 81.938 56.133 26.177 1 57.71 ? H3A1 G2P 501 B 1 HETATM 34 H H3A2 G2P . . . K 7 82.433 56.137 24.469 1 57.71 ? H3A2 G2P 501 B 1 HETATM 35 H "H5'1" G2P . . . K 7 82.805 58.68 26.131 1 57.71 ? "H5'1" G2P 501 B 1 HETATM 36 H "H5'2" G2P . . . K 7 84.161 58.739 24.979 1 57.71 ? "H5'2" G2P 501 B 1 HETATM 37 H H4' G2P . . . K 7 83.638 60.477 27.204 1 57.71 ? H4' G2P 501 B 1 HETATM 38 H H3' G2P . . . K 7 85.639 60.32 24.841 1 57.71 ? H3' G2P 501 B 1 HETATM 39 H HA G2P . . . K 7 84.211 62.515 26.055 1 57.71 ? HA G2P 501 B 1 HETATM 40 H H2' G2P . . . K 7 87.21 61.112 25.771 1 57.71 ? H2' G2P 501 B 1 HETATM 41 H HB G2P . . . K 7 86.48 63.246 25.767 1 57.71 ? HB G2P 501 B 1 HETATM 42 H H1' G2P . . . K 7 85.893 61.292 28.495 1 57.71 ? H1' G2P 501 B 1 HETATM 43 H H8 G2P . . . K 7 87.135 58.844 26.477 1 57.71 ? H8 G2P 501 B 1 HETATM 44 H H1 G2P . . . K 7 91.407 59.542 31.264 1 57.71 ? H1 G2P 501 B 1 HETATM 45 H H2N1 G2P . . . K 7 89.404 62.163 32.48 1 57.71 ? H2N1 G2P 501 B 1 HETATM 46 H H2N2 G2P . . . K 7 90.819 61.194 32.747 1 57.71 ? H2N2 G2P 501 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 46 #