data_7ZCW # _model_server_result.job_id '_WjP2jsHQ6eV5VYdp3eeGw' _model_server_result.datetime_utc '2024-11-29 08:09:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":501}' # _entry.id 7ZCW # _exptl.entry_id 7ZCW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 521.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZCW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 O N N ? 7 Q N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O1G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc2 I O2B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 K O2G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc4 K O3G G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 K O2B G2P . B G2P 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 M O1G GTP . E GTP 501 1_555 N MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc7 O O3G G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 O O2B G2P . F G2P 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc9 G OE2 GLU 69 G GLU 69 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 Q O3G G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc11 Q O2B G2P . G G2P 501 1_555 R MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc12 S O3G G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc13 S O2B G2P . H G2P 501 1_555 T MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id G2P _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G G2P sing 83 n n PG O2G G2P doub 84 n n PG O3G G2P sing 85 n n PG O3B G2P sing 86 n n O3B PB G2P sing 87 n n PB O1B G2P sing 88 n n PB O2B G2P doub 89 n n PB C3A G2P sing 90 n n C3A PA G2P sing 91 n n C3A H3A1 G2P sing 92 n n C3A H3A2 G2P sing 93 n n PA O1A G2P sing 94 n n PA O2A G2P doub 95 n n PA O5' G2P sing 96 n n O5' C5' G2P sing 97 n n C5' C4' G2P sing 98 n n C5' "H5'1" G2P sing 99 n n C5' "H5'2" G2P sing 100 n n C4' O4' G2P sing 101 n n C4' C3' G2P sing 102 n n C4' H4' G2P sing 103 n n O4' C1' G2P sing 104 n n C3' O3' G2P sing 105 n n C3' C2' G2P sing 106 n n C3' H3' G2P sing 107 n n O3' HA G2P sing 108 n n C2' O2' G2P sing 109 n n C2' C1' G2P sing 110 n n C2' H2' G2P sing 111 n n O2' HB G2P sing 112 n n C1' N9 G2P sing 113 n n C1' H1' G2P sing 114 n n N9 C8 G2P sing 115 n y N9 C4 G2P sing 116 n y C8 N7 G2P doub 117 n y C8 H8 G2P sing 118 n n N7 C5 G2P sing 119 n y C5 C6 G2P sing 120 n y C5 C4 G2P doub 121 n y C6 O6 G2P doub 122 n n C6 N1 G2P sing 123 n y N1 C2 G2P sing 124 n y N1 H1 G2P sing 125 n n C2 N2 G2P sing 126 n n C2 N3 G2P doub 127 n y N2 H2N1 G2P sing 128 n n N2 H2N2 G2P sing 129 n n N3 C4 G2P sing 130 n y HO1 O1G G2P sing 131 n n HO2 O3G G2P sing 132 n n HO3 O1A G2P sing 133 n n HO4 O1B G2P sing 134 n n # _atom_sites.entry_id 7ZCW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GTP A 1 501 501 GTP GTP . J 6 MG A 1 502 502 MG MG . K 7 G2P B 1 501 502 G2P G2P . L 6 MG B 1 502 503 MG MG . M 5 GTP E 1 501 501 GTP GTP . N 6 MG E 1 502 502 MG MG . O 7 G2P F 1 501 502 G2P G2P . P 6 MG F 1 502 503 MG MG . Q 7 G2P G 1 501 502 G2P G2P . R 6 MG G 1 502 503 MG MG . S 7 G2P H 1 501 502 G2P G2P . T 6 MG H 1 502 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG G2P . . . Q 7 81.999 53.254 107.85 1 52.84 ? PG G2P 501 G 1 HETATM 2 O O1G G2P . . . Q 7 80.838 52.505 107.259 1 52.84 ? O1G G2P 501 G 1 HETATM 3 O O2G G2P . . . Q 7 82.319 54.457 107.004 1 52.84 ? O2G G2P 501 G 1 HETATM 4 O O3G G2P . . . Q 7 83.21 52.362 107.916 1 52.84 ? O3G G2P 501 G 1 HETATM 5 O O3B G2P . . . Q 7 81.608 53.754 109.366 1 52.84 ? O3B G2P 501 G 1 HETATM 6 P PB G2P . . . Q 7 82.75 54.455 110.318 1 52.84 ? PB G2P 501 G 1 HETATM 7 O O1B G2P . . . Q 7 82.646 53.933 111.723 1 52.84 ? O1B G2P 501 G 1 HETATM 8 O O2B G2P . . . Q 7 84.1 54.116 109.75 1 52.84 ? O2B G2P 501 G 1 HETATM 9 C C3A G2P . . . Q 7 82.533 56.299 110.329 1 52.84 ? C3A G2P 501 G 1 HETATM 10 P PA G2P . . . Q 7 84.223 57.047 110.551 1 52.84 ? PA G2P 501 G 1 HETATM 11 O O1A G2P . . . Q 7 85.094 56.075 111.305 1 52.84 ? O1A G2P 501 G 1 HETATM 12 O O2A G2P . . . Q 7 84.852 57.328 109.211 1 52.84 ? O2A G2P 501 G 1 HETATM 13 O O5' G2P . . . Q 7 84.072 58.433 111.436 1 52.84 ? O5' G2P 501 G 1 HETATM 14 C C5' G2P . . . Q 7 83.816 59.663 110.809 1 52.84 ? C5' G2P 501 G 1 HETATM 15 C C4' G2P . . . Q 7 84.679 60.663 111.495 1 52.84 ? C4' G2P 501 G 1 HETATM 16 O O4' G2P . . . Q 7 85.514 60.027 112.257 1 52.84 ? O4' G2P 501 G 1 HETATM 17 C C3' G2P . . . Q 7 85.641 61.484 110.417 1 52.84 ? C3' G2P 501 G 1 HETATM 18 O O3' G2P . . . Q 7 84.915 62.666 109.914 1 52.84 ? O3' G2P 501 G 1 HETATM 19 C C2' G2P . . . Q 7 86.654 61.843 111.042 1 52.84 ? C2' G2P 501 G 1 HETATM 20 O O2' G2P . . . Q 7 86.556 63.314 111.323 1 52.84 ? O2' G2P 501 G 1 HETATM 21 C C1' G2P . . . Q 7 86.621 61.025 112.435 1 52.84 ? C1' G2P 501 G 1 HETATM 22 N N9 G2P . . . Q 7 87.759 60.439 112.813 1 52.84 ? N9 G2P 501 G 1 HETATM 23 C C8 G2P . . . Q 7 87.93 59.513 111.858 1 52.84 ? C8 G2P 501 G 1 HETATM 24 N N7 G2P . . . Q 7 89.055 58.846 112.127 1 52.84 ? N7 G2P 501 G 1 HETATM 25 C C5 G2P . . . Q 7 89.575 59.336 113.255 1 52.84 ? C5 G2P 501 G 1 HETATM 26 C C6 G2P . . . Q 7 90.703 59.02 113.978 1 52.84 ? C6 G2P 501 G 1 HETATM 27 O O6 G2P . . . Q 7 91.42 58.156 113.613 1 52.84 ? O6 G2P 501 G 1 HETATM 28 N N1 G2P . . . Q 7 90.988 59.679 115.083 1 52.84 ? N1 G2P 501 G 1 HETATM 29 C C2 G2P . . . Q 7 90.174 60.667 115.508 1 52.84 ? C2 G2P 501 G 1 HETATM 30 N N2 G2P . . . Q 7 90.573 61.332 116.729 1 52.84 ? N2 G2P 501 G 1 HETATM 31 N N3 G2P . . . Q 7 89.069 60.98 114.8 1 52.84 ? N3 G2P 501 G 1 HETATM 32 C C4 G2P . . . Q 7 88.775 60.31 113.675 1 52.84 ? C4 G2P 501 G 1 HETATM 33 H H3A1 G2P . . . Q 7 81.892 56.589 111.154 1 52.84 ? H3A1 G2P 501 G 1 HETATM 34 H H3A2 G2P . . . Q 7 82.102 56.627 109.39 1 52.84 ? H3A2 G2P 501 G 1 HETATM 35 H "H5'1" G2P . . . Q 7 82.768 59.93 110.923 1 52.84 ? "H5'1" G2P 501 G 1 HETATM 36 H "H5'2" G2P . . . Q 7 84.075 59.618 109.756 1 52.84 ? "H5'2" G2P 501 G 1 HETATM 37 H H4' G2P . . . Q 7 84.083 61.357 112.078 1 52.84 ? H4' G2P 501 G 1 HETATM 38 H H3' G2P . . . Q 7 85.923 60.833 109.596 1 52.84 ? H3' G2P 501 G 1 HETATM 39 H HA G2P . . . Q 7 84.617 63.186 110.641 1 52.84 ? HA G2P 501 G 1 HETATM 40 H H2' G2P . . . Q 7 87.547 61.646 110.456 1 52.84 ? H2' G2P 501 G 1 HETATM 41 H HB G2P . . . Q 7 86.779 63.799 110.543 1 52.84 ? HB G2P 501 G 1 HETATM 42 H H1' G2P . . . Q 7 86.324 61.718 113.219 1 52.84 ? H1' G2P 501 G 1 HETATM 43 H H8 G2P . . . Q 7 87.302 59.327 110.997 1 52.84 ? H8 G2P 501 G 1 HETATM 44 H H1 G2P . . . Q 7 91.808 59.447 115.604 1 52.84 ? H1 G2P 501 G 1 HETATM 45 H H2N1 G2P . . . Q 7 90.004 62.063 117.11 1 52.84 ? H2N1 G2P 501 G 1 HETATM 46 H H2N2 G2P . . . Q 7 91.419 61.061 117.193 1 52.84 ? H2N2 G2P 501 G 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 46 #