data_7ZDA # _model_server_result.job_id Q3YrrYFx8QXJrrd6qCj-3A _model_server_result.datetime_utc '2025-02-05 17:59:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 7ZDA # _exptl.entry_id 7ZDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 380 C SER 380 1_555 C MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A OE1 GLN 421 C GLN 421 1_555 C MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 C MG MG . C MG 601 1_555 D O3B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 C MG MG . C MG 601 1_555 E O2 PO3 . C PO3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc5 B OG SER 390 D SER 390 1_555 F MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 B OE1 GLN 430 D GLN 430 1_555 F MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc7 F MG MG . D MG 601 1_555 G O1G ATP . D ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 F MG MG . D MG 601 1_555 G O1B ATP . D ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7ZDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG C 1 601 1 MG MG . D 4 ADP C 1 602 3 ADP ADP . E 5 PO3 C 1 603 4 PO3 PO3 . F 3 MG D 1 601 2 MG MG . G 6 ATP D 1 602 5 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 145.406 122.916 97.06 1 42.74 ? PG ATP 602 D 1 HETATM 2 O O1G ATP . . . G 6 144.928 122.125 95.869 1 42.74 ? O1G ATP 602 D 1 HETATM 3 O O2G ATP . . . G 6 144.391 123.077 98.163 1 42.74 -1 O2G ATP 602 D 1 HETATM 4 O O3G ATP . . . G 6 146.787 122.544 97.536 1 42.74 ? O3G ATP 602 D 1 HETATM 5 P PB ATP . . . G 6 144.403 125.027 95.577 1 42.74 ? PB ATP 602 D 1 HETATM 6 O O1B ATP . . . G 6 143.132 124.261 95.844 1 42.74 -1 O1B ATP 602 D 1 HETATM 7 O O2B ATP . . . G 6 144.937 125.16 94.178 1 42.74 ? O2B ATP 602 D 1 HETATM 8 O O3B ATP . . . G 6 145.571 124.406 96.486 1 42.74 ? O3B ATP 602 D 1 HETATM 9 P PA ATP . . . G 6 142.837 127.277 96.153 1 42.74 ? PA ATP 602 D 1 HETATM 10 O O1A ATP . . . G 6 141.968 126.693 97.234 1 42.74 -1 O1A ATP 602 D 1 HETATM 11 O O2A ATP . . . G 6 142.329 127.347 94.74 1 42.74 ? O2A ATP 602 D 1 HETATM 12 O O3A ATP . . . G 6 144.247 126.507 96.173 1 42.74 ? O3A ATP 602 D 1 HETATM 13 O O5' ATP . . . G 6 143.294 128.746 96.606 1 42.74 ? O5' ATP 602 D 1 HETATM 14 C C5' ATP . . . G 6 142.417 129.861 96.509 1 42.74 ? C5' ATP 602 D 1 HETATM 15 C C4' ATP . . . G 6 142.63 130.737 97.732 1 42.74 ? C4' ATP 602 D 1 HETATM 16 O O4' ATP . . . G 6 141.369 131.279 98.108 1 42.74 ? O4' ATP 602 D 1 HETATM 17 C C3' ATP . . . G 6 143.138 129.913 98.902 1 42.74 ? C3' ATP 602 D 1 HETATM 18 O O3' ATP . . . G 6 144.22 130.597 99.539 1 42.74 ? O3' ATP 602 D 1 HETATM 19 C C2' ATP . . . G 6 141.974 129.785 99.861 1 42.74 ? C2' ATP 602 D 1 HETATM 20 O O2' ATP . . . G 6 142.402 130.081 101.192 1 42.74 ? O2' ATP 602 D 1 HETATM 21 C C1' ATP . . . G 6 140.953 130.802 99.387 1 42.74 ? C1' ATP 602 D 1 HETATM 22 N N9 ATP . . . G 6 139.633 130.151 99.232 1 42.74 ? N9 ATP 602 D 1 HETATM 23 C C8 ATP . . . G 6 139.411 128.96 98.649 1 42.74 ? C8 ATP 602 D 1 HETATM 24 N N7 ATP . . . G 6 138.093 128.645 98.666 1 42.74 ? N7 ATP 602 D 1 HETATM 25 C C5 ATP . . . G 6 137.448 129.654 99.274 1 42.74 ? C5 ATP 602 D 1 HETATM 26 C C6 ATP . . . G 6 136.047 129.961 99.624 1 42.74 ? C6 ATP 602 D 1 HETATM 27 N N6 ATP . . . G 6 135.046 129.102 99.319 1 42.74 ? N6 ATP 602 D 1 HETATM 28 N N1 ATP . . . G 6 135.802 131.127 100.26 1 42.74 ? N1 ATP 602 D 1 HETATM 29 C C2 ATP . . . G 6 136.788 131.989 100.571 1 42.74 ? C2 ATP 602 D 1 HETATM 30 N N3 ATP . . . G 6 138.081 131.773 100.284 1 42.74 ? N3 ATP 602 D 1 HETATM 31 C C4 ATP . . . G 6 138.468 130.642 99.65 1 42.74 ? C4 ATP 602 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #