data_7ZDB
#
_model_server_result.job_id            GIvu_a-Gp360oK3BTV3JWw 
_model_server_result.datetime_utc      '2025-04-08 22:52:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7ZDB 
#
_exptl.entry_id    7ZDB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 380 C SER 380 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc2 A OE1 GLN 421 C GLN 421 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc3 D MG MG . C MG 602 1_555 E O3B ADP . C ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? 
metalc ? metalc4 B OG SER 390 D SER 390 1_555 G MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc5 G MG MG . D MG 601 1_555 H O2B ATP . D ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc6 G MG MG . D MG 601 1_555 H O3B ATP . D ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 222 n n 
FE NB HEB sing 223 n n 
FE NC HEB sing 224 n n 
FE ND HEB sing 225 n n 
CHA C1A HEB doub 226 n n 
CHA C4D HEB sing 227 n n 
CHA HHA HEB sing 228 n n 
CHB C4A HEB doub 229 n n 
CHB C1B HEB sing 230 n n 
CHB HHB HEB sing 231 n n 
CHC C4B HEB doub 232 n n 
CHC C1C HEB sing 233 n n 
CHC HHC HEB sing 234 n n 
CHD C4C HEB sing 235 n n 
CHD C1D HEB doub 236 n n 
CHD HHD HEB sing 237 n n 
NA C1A HEB sing 238 n n 
NA C4A HEB sing 239 n n 
C1A C2A HEB sing 240 n n 
C2A C3A HEB doub 241 n n 
C2A CAA HEB sing 242 n n 
C3A C4A HEB sing 243 n n 
C3A CMA HEB sing 244 n n 
CMA HMA1 HEB sing 245 n n 
CMA HMA2 HEB sing 246 n n 
CMA HMA3 HEB sing 247 n n 
CAA CBA HEB sing 248 n n 
CAA HAA1 HEB sing 249 n n 
CAA HAA2 HEB sing 250 n n 
CBA CGA HEB sing 251 n n 
CBA HBA1 HEB sing 252 n n 
CBA HBA2 HEB sing 253 n n 
CGA O1A HEB doub 254 n n 
CGA O2A HEB sing 255 n n 
O2A H2A HEB sing 256 n n 
NB C1B HEB doub 257 n n 
NB C4B HEB sing 258 n n 
C1B C2B HEB sing 259 n n 
C2B C3B HEB doub 260 n n 
C2B CMB HEB sing 261 n n 
C3B C4B HEB sing 262 n n 
C3B CAB HEB sing 263 n n 
CMB HMB1 HEB sing 264 n n 
CMB HMB2 HEB sing 265 n n 
CMB HMB3 HEB sing 266 n n 
CAB CBB HEB sing 267 n n 
CAB HAB HEB sing 268 n n 
CAB HAB2 HEB sing 269 n n 
CBB HBB1 HEB sing 270 n n 
CBB HBB2 HEB sing 271 n n 
CBB HBB3 HEB sing 272 n n 
NC C1C HEB sing 273 n y 
NC C4C HEB sing 274 n y 
C1C C2C HEB doub 275 n y 
C2C C3C HEB sing 276 n y 
C2C CMC HEB sing 277 n n 
C3C C4C HEB doub 278 n y 
C3C CAC HEB sing 279 n n 
CMC HMC1 HEB sing 280 n n 
CMC HMC2 HEB sing 281 n n 
CMC HMC3 HEB sing 282 n n 
CAC CBC HEB doub 283 n n 
CAC HAC HEB sing 284 n n 
CBC HBC1 HEB sing 285 n n 
CBC HBC2 HEB sing 286 n n 
ND C1D HEB sing 287 n n 
ND C4D HEB doub 288 n n 
C1D C2D HEB sing 289 n n 
C2D C3D HEB doub 290 n n 
C2D CMD HEB sing 291 n n 
C3D C4D HEB sing 292 n n 
C3D CAD HEB sing 293 n n 
CMD HMD1 HEB sing 294 n n 
CMD HMD2 HEB sing 295 n n 
CMD HMD3 HEB sing 296 n n 
CAD CBD HEB sing 297 n n 
CAD HAD1 HEB sing 298 n n 
CAD HAD2 HEB sing 299 n n 
CBD CGD HEB sing 300 n n 
CBD HBD1 HEB sing 301 n n 
CBD HBD2 HEB sing 302 n n 
CGD O1D HEB doub 303 n n 
CGD O2D HEB sing 304 n n 
O2D H2D HEB sing 305 n n 
#
_atom_sites.entry_id                     7ZDB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEB C 1 601 1 HEB HEB . 
D 4 MG C 1 602 1 MG MG . 
E 5 ADP C 1 603 3 ADP ADP . 
F 6 PO3 C 1 604 4 PO3 PO3 . 
G 4 MG D 1 601 2 MG MG . 
H 7 ATP D 1 602 5 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . C 3 116.341 126.537 136.008 1 46.02 ? FE HEB 601 C 1 
HETATM 2 C CHA HEB . . . C 3 112.912 125.81 137.306 1 46.02 ? CHA HEB 601 C 1 
HETATM 3 C CHB HEB . . . C 3 117.033 122.927 135.677 1 46.02 ? CHB HEB 601 C 1 
HETATM 4 C CHC HEB . . . C 3 119.719 127.328 134.731 1 46.02 ? CHC HEB 601 C 1 
HETATM 5 C CHD HEB . . . C 3 115.735 130.283 136.309 1 46.02 ? CHD HEB 601 C 1 
HETATM 6 N NA HEB . . . C 3 115.193 124.8 136.415 1 46.02 ? NA HEB 601 C 1 
HETATM 7 C C1A HEB . . . C 3 113.838 124.731 136.932 1 46.02 ? C1A HEB 601 C 1 
HETATM 8 C C2A HEB . . . C 3 113.692 123.423 136.963 1 46.02 ? C2A HEB 601 C 1 
HETATM 9 C C3A HEB . . . C 3 114.601 122.661 136.601 1 46.02 ? C3A HEB 601 C 1 
HETATM 10 C C4A HEB . . . C 3 115.704 123.349 136.193 1 46.02 ? C4A HEB 601 C 1 
HETATM 11 C CMA HEB . . . C 3 114.498 121.136 136.613 1 46.02 ? CMA HEB 601 C 1 
HETATM 12 C CAA HEB . . . C 3 112.367 122.834 137.459 1 46.02 ? CAA HEB 601 C 1 
HETATM 13 C CBA HEB . . . C 3 111.227 123.359 136.595 1 46.02 ? CBA HEB 601 C 1 
HETATM 14 C CGA HEB . . . C 3 109.919 123.261 137.361 1 46.02 ? CGA HEB 601 C 1 
HETATM 15 O O1A HEB . . . C 3 109.787 123.86 138.464 1 46.02 ? O1A HEB 601 C 1 
HETATM 16 O O2A HEB . . . C 3 108.964 122.58 136.896 1 46.02 ? O2A HEB 601 C 1 
HETATM 17 N NB HEB . . . C 3 118.031 125.368 135.34 1 46.02 ? NB HEB 601 C 1 
HETATM 18 C C1B HEB . . . C 3 118.096 123.89 135.288 1 46.02 ? C1B HEB 601 C 1 
HETATM 19 C C2B HEB . . . C 3 119.304 123.757 134.823 1 46.02 ? C2B HEB 601 C 1 
HETATM 20 C C3B HEB . . . C 3 120.002 124.749 134.575 1 46.02 ? C3B HEB 601 C 1 
HETATM 21 C C4B HEB . . . C 3 119.337 125.917 134.851 1 46.02 ? C4B HEB 601 C 1 
HETATM 22 C CMB HEB . . . C 3 119.863 122.377 134.584 1 46.02 ? CMB HEB 601 C 1 
HETATM 23 C CAB HEB . . . C 3 121.417 124.68 134.033 1 46.02 ? CAB HEB 601 C 1 
HETATM 24 C CBB HEB . . . C 3 121.513 125.493 132.763 1 46.02 ? CBB HEB 601 C 1 
HETATM 25 N NC HEB . . . C 3 117.373 128.408 135.648 1 46.02 ? NC HEB 601 C 1 
HETATM 26 C C1C HEB . . . C 3 118.794 128.47 135.106 1 46.02 ? C1C HEB 601 C 1 
HETATM 27 C C2C HEB . . . C 3 118.997 129.68 135.051 1 46.02 ? C2C HEB 601 C 1 
HETATM 28 C C3C HEB . . . C 3 118.126 130.471 135.399 1 46.02 ? C3C HEB 601 C 1 
HETATM 29 C C4C HEB . . . C 3 116.935 129.796 135.841 1 46.02 ? C4C HEB 601 C 1 
HETATM 30 C CMC HEB . . . C 3 120.333 130.198 134.55 1 46.02 ? CMC HEB 601 C 1 
HETATM 31 C CAC HEB . . . C 3 118.284 131.971 135.366 1 46.02 ? CAC HEB 601 C 1 
HETATM 32 C CBC HEB . . . C 3 118.124 132.549 133.97 1 46.02 ? CBC HEB 601 C 1 
HETATM 33 N ND HEB . . . C 3 114.587 127.94 136.705 1 46.02 ? ND HEB 601 C 1 
HETATM 34 C C1D HEB . . . C 3 114.61 129.382 136.723 1 46.02 ? C1D HEB 601 C 1 
HETATM 35 C C2D HEB . . . C 3 113.377 129.569 137.198 1 46.02 ? C2D HEB 601 C 1 
HETATM 36 C C3D HEB . . . C 3 112.516 128.536 137.507 1 46.02 ? C3D HEB 601 C 1 
HETATM 37 C C4D HEB . . . C 3 113.274 127.318 137.195 1 46.02 ? C4D HEB 601 C 1 
HETATM 38 C CMD HEB . . . C 3 112.901 130.979 137.406 1 46.02 ? CMD HEB 601 C 1 
HETATM 39 C CAD HEB . . . C 3 111.09 128.634 138.055 1 46.02 ? CAD HEB 601 C 1 
HETATM 40 C CBD HEB . . . C 3 111.136 128.675 139.571 1 46.02 ? CBD HEB 601 C 1 
HETATM 41 C CGD HEB . . . C 3 111.784 127.398 140.092 1 46.02 ? CGD HEB 601 C 1 
HETATM 42 O O1D HEB . . . C 3 111.097 126.556 140.728 1 46.02 ? O1D HEB 601 C 1 
HETATM 43 O O2D HEB . . . C 3 113.008 127.185 139.888 1 46.02 ? O2D HEB 601 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           631 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#