data_7ZDF
#
_model_server_result.job_id            JZLB_kQdUyYOhoqVLuXoLQ 
_model_server_result.datetime_utc      '2025-01-20 15:52:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7ZDF 
#
_exptl.entry_id    7ZDF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "{3,3'-[(9S)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~]dipropanoato(2-)}iron" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 C HIS 85 1_555 C FE ISW . D ISW 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc2 B NE2 HIS 312 D HIS 312 1_555 C FE ISW . D ISW 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc3 B OG SER 390 D SER 390 1_555 D MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 B OE1 GLN 430 D GLN 430 1_555 D MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc5 D MG MG . D MG 602 1_555 E O2G ANP . D ANP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc6 D MG MG . D MG 602 1_555 E O2B ANP . D ANP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                ISW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "{3,3'-[(9S)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~]dipropanoato(2-)}iron" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Isoporphyrin containing Fe' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA ISW sing 221 n n 
FE ND ISW sing 222 n n 
NA C1A ISW sing 223 n y 
NB FE ISW sing 224 n n 
NB C1B ISW doub 225 n n 
NC FE ISW sing 226 n n 
NC C4C ISW sing 227 n y 
ND C4D ISW doub 228 n n 
C1A C2A ISW sing 229 n y 
C1A CHA ISW doub 230 n n 
C1B CHB ISW sing 231 n n 
C1C NC ISW sing 232 n y 
C1D ND ISW sing 233 n n 
C1D C2D ISW sing 234 n n 
O1D HO1D ISW sing 235 n n 
C2A CAA ISW sing 236 n n 
O2A HO2A ISW sing 237 n n 
C2B C1B ISW sing 238 n n 
C2C C1C ISW doub 239 n y 
C2C C3C ISW sing 240 n y 
C2D CMD ISW sing 241 n n 
C2D C3D ISW doub 242 n n 
C3A C2A ISW doub 243 n y 
C3A CMA ISW sing 244 n n 
C3B C2B ISW doub 245 n n 
C3B C4B ISW sing 246 n n 
C3C C4C ISW doub 247 n y 
C3D CAD ISW sing 248 n n 
C4A NA ISW sing 249 n y 
C4A C3A ISW sing 250 n y 
C4B NB ISW sing 251 n n 
C4C CHD ISW sing 252 n n 
C4D C3D ISW sing 253 n n 
C4D CHA ISW sing 254 n n 
CAA CBA ISW sing 255 n n 
CAA HAA ISW sing 256 n n 
CAA HAAA ISW sing 257 n n 
CAB C3B ISW sing 258 n n 
CAB CBB ISW doub 259 n n 
CAB HAB ISW sing 260 n n 
CAC C3C ISW sing 261 n n 
CAC CBC ISW doub 262 n n 
CAC HAC ISW sing 263 n n 
CAD CBD ISW sing 264 n n 
CAD HAD ISW sing 265 n n 
CAD HADA ISW sing 266 n n 
CBA CGA ISW sing 267 n n 
CBA HBA ISW sing 268 n n 
CBA HBAA ISW sing 269 n n 
CBB HBB ISW sing 270 n n 
CBB HBBA ISW sing 271 n n 
CBC HBC ISW sing 272 n n 
CBC HBCA ISW sing 273 n n 
CBD CGD ISW sing 274 n n 
CBD HBD ISW sing 275 n n 
CBD HBDA ISW sing 276 n n 
CGA O1A ISW doub 277 n n 
CGA O2A ISW sing 278 n n 
CGD O1D ISW sing 279 n n 
CGD O2D ISW doub 280 n n 
CHA HHA ISW sing 281 n n 
CHB C4A ISW doub 282 n n 
CHB HHB ISW sing 283 n n 
CHC C1C ISW sing 284 n n 
CHC C4B ISW sing 285 n n 
CHC HHC ISW sing 286 n n 
CHD C1D ISW doub 287 n n 
CHD HHD ISW sing 288 n n 
CMA HMA ISW sing 289 n n 
CMA HMAA ISW sing 290 n n 
CMA HMAB ISW sing 291 n n 
CMB C2B ISW sing 292 n n 
CMB HMB ISW sing 293 n n 
CMB HMBA ISW sing 294 n n 
CMB HMBB ISW sing 295 n n 
CMC C2C ISW sing 296 n n 
CMC HMC ISW sing 297 n n 
CMC HMCA ISW sing 298 n n 
CMC HMCB ISW sing 299 n n 
CMD HMD ISW sing 300 n n 
CMD HMDA ISW sing 301 n n 
CMD HMDB ISW sing 302 n n 
C4B H33 ISW sing 303 n n 
CHC H34 ISW sing 304 n n 
#
_atom_sites.entry_id                     7ZDF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ISW D 1 601 1 ISW HEB . 
D 4 MG D 1 602 1 MG MG . 
E 5 ANP D 1 603 2 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE ISW . . . C 3 113.446 123.417 135.42 1 33.7 ? FE ISW 601 D 1 
HETATM 2 N NA ISW . . . C 3 111.495 122.591 135.494 1 33.7 ? NA ISW 601 D 1 
HETATM 3 N NB ISW . . . C 3 114.282 121.591 134.625 1 33.7 ? NB ISW 601 D 1 
HETATM 4 N NC ISW . . . C 3 115.371 124.413 135.405 1 33.7 ? NC ISW 601 D 1 
HETATM 5 N ND ISW . . . C 3 112.674 125.466 136.272 1 33.7 ? ND ISW 601 D 1 
HETATM 6 C C1A ISW . . . C 3 110.273 123.228 135.943 1 33.7 ? C1A ISW 601 D 1 
HETATM 7 O O1A ISW . . . C 3 105.243 121.66 135.231 1 33.7 ? O1A ISW 601 D 1 
HETATM 8 C C1B ISW . . . C 3 113.53 120.352 134.335 1 33.7 ? C1B ISW 601 D 1 
HETATM 9 C C1C ISW . . . C 3 116.642 123.729 134.929 1 33.7 ? C1C ISW 601 D 1 
HETATM 10 C C1D ISW . . . C 3 113.49 126.625 136.524 1 33.7 ? C1D ISW 601 D 1 
HETATM 11 O O1D ISW . . . C 3 107.018 127.127 138.525 1 33.7 ? O1D ISW 601 D 1 
HETATM 12 C C2A ISW . . . C 3 109.432 122.232 135.752 1 33.7 ? C2A ISW 601 D 1 
HETATM 13 O O2A ISW . . . C 3 106.211 121.61 133.274 1 33.7 ? O2A ISW 601 D 1 
HETATM 14 C C2B ISW . . . C 3 114.506 119.617 133.898 1 33.7 ? C2B ISW 601 D 1 
HETATM 15 C C2C ISW . . . C 3 117.48 124.611 135.078 1 33.7 ? C2C ISW 601 D 1 
HETATM 16 C C2D ISW . . . C 3 112.526 127.418 136.979 1 33.7 ? C2D ISW 601 D 1 
HETATM 17 O O2D ISW . . . C 3 107.339 129.231 138.049 1 33.7 ? O2D ISW 601 D 1 
HETATM 18 C C3A ISW . . . C 3 109.817 121.141 135.303 1 33.7 ? C3A ISW 601 D 1 
HETATM 19 C C3B ISW . . . C 3 115.66 120.066 133.837 1 33.7 ? C3B ISW 601 D 1 
HETATM 20 C C3C ISW . . . C 3 117.161 125.707 135.518 1 33.7 ? C3C ISW 601 D 1 
HETATM 21 C C3D ISW . . . C 3 111.209 127.036 137.089 1 33.7 ? C3D ISW 601 D 1 
HETATM 22 C C4A ISW . . . C 3 111.151 121.142 135.053 1 33.7 ? C4A ISW 601 D 1 
HETATM 23 C C4B ISW . . . C 3 115.719 121.363 134.278 1 33.7 ? C4B ISW 601 D 1 
HETATM 24 C C4C ISW . . . C 3 115.751 125.77 135.805 1 33.7 ? C4C ISW 601 D 1 
HETATM 25 C C4D ISW . . . C 3 111.188 125.642 136.611 1 33.7 ? C4D ISW 601 D 1 
HETATM 26 C CAA ISW . . . C 3 107.954 122.433 136.105 1 33.7 ? CAA ISW 601 D 1 
HETATM 27 C CAB ISW . . . C 3 116.86 119.28 133.343 1 33.7 ? CAB ISW 601 D 1 
HETATM 28 C CAC ISW . . . C 3 118.16 126.822 135.728 1 33.7 ? CAC ISW 601 D 1 
HETATM 29 C CAD ISW . . . C 3 110.074 127.916 137.619 1 33.7 ? CAD ISW 601 D 1 
HETATM 30 C CBA ISW . . . C 3 107.191 123.05 134.942 1 33.7 ? CBA ISW 601 D 1 
HETATM 31 C CBB ISW . . . C 3 117.302 119.796 131.995 1 33.7 ? CBB ISW 601 D 1 
HETATM 32 C CBC ISW . . . C 3 117.724 128.199 135.267 1 33.7 ? CBC ISW 601 D 1 
HETATM 33 C CBD ISW . . . C 3 108.756 127.637 136.934 1 33.7 ? CBD ISW 601 D 1 
HETATM 34 C CGA ISW . . . C 3 106.156 122.052 134.454 1 33.7 ? CGA ISW 601 D 1 
HETATM 35 C CGD ISW . . . C 3 107.638 128.02 137.891 1 33.7 ? CGD ISW 601 D 1 
HETATM 36 C CHA ISW . . . C 3 110.055 124.587 136.458 1 33.7 ? CHA ISW 601 D 1 
HETATM 37 C CHB ISW . . . C 3 112.079 120.113 134.522 1 33.7 ? CHB ISW 601 D 1 
HETATM 38 C CHC ISW . . . C 3 116.823 122.319 134.405 1 33.7 ? CHC ISW 601 D 1 
HETATM 39 C CHD ISW . . . C 3 114.962 126.778 136.302 1 33.7 ? CHD ISW 601 D 1 
HETATM 40 C CMA ISW . . . C 3 108.922 119.929 135.049 1 33.7 ? CMA ISW 601 D 1 
HETATM 41 C CMB ISW . . . C 3 114.215 118.204 133.46 1 33.7 ? CMB ISW 601 D 1 
HETATM 42 C CMC ISW . . . C 3 118.93 124.347 134.715 1 33.7 ? CMC ISW 601 D 1 
HETATM 43 C CMD ISW . . . C 3 112.889 128.813 137.399 1 33.7 ? CMD ISW 601 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#