data_7ZDL
#
_model_server_result.job_id            kEZilKc6Z9EYDFxJPkPI9w 
_model_server_result.datetime_utc      '2024-11-27 11:30:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zdl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7ZDL 
#
_exptl.entry_id    7ZDL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 C HIS 85 1_555 C FE HEB . C HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc2 A OG SER 380 C SER 380 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 A OE1 GLN 421 C GLN 421 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc4 C FE HEB . C HEB 601 1_555 B NE2 HIS 312 D HIS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc5 D MG MG . C MG 602 1_555 E O1G ANP . C ANP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc6 D MG MG . C MG 602 1_555 E O2B ANP . C ANP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc7 B OE1 GLN 430 D GLN 430 1_555 F MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc8 F MG MG . D MG 601 1_555 G O3G ANP . D ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc9 F MG MG . D MG 601 1_555 G O1B ANP . D ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 179 n n 
FE NB HEB sing 180 n n 
FE NC HEB sing 181 n n 
FE ND HEB sing 182 n n 
CHA C1A HEB doub 183 n n 
CHA C4D HEB sing 184 n n 
CHA HHA HEB sing 185 n n 
CHB C4A HEB doub 186 n n 
CHB C1B HEB sing 187 n n 
CHB HHB HEB sing 188 n n 
CHC C4B HEB doub 189 n n 
CHC C1C HEB sing 190 n n 
CHC HHC HEB sing 191 n n 
CHD C4C HEB sing 192 n n 
CHD C1D HEB doub 193 n n 
CHD HHD HEB sing 194 n n 
NA C1A HEB sing 195 n n 
NA C4A HEB sing 196 n n 
C1A C2A HEB sing 197 n n 
C2A C3A HEB doub 198 n n 
C2A CAA HEB sing 199 n n 
C3A C4A HEB sing 200 n n 
C3A CMA HEB sing 201 n n 
CMA HMA1 HEB sing 202 n n 
CMA HMA2 HEB sing 203 n n 
CMA HMA3 HEB sing 204 n n 
CAA CBA HEB sing 205 n n 
CAA HAA1 HEB sing 206 n n 
CAA HAA2 HEB sing 207 n n 
CBA CGA HEB sing 208 n n 
CBA HBA1 HEB sing 209 n n 
CBA HBA2 HEB sing 210 n n 
CGA O1A HEB doub 211 n n 
CGA O2A HEB sing 212 n n 
O2A H2A HEB sing 213 n n 
NB C1B HEB doub 214 n n 
NB C4B HEB sing 215 n n 
C1B C2B HEB sing 216 n n 
C2B C3B HEB doub 217 n n 
C2B CMB HEB sing 218 n n 
C3B C4B HEB sing 219 n n 
C3B CAB HEB sing 220 n n 
CMB HMB1 HEB sing 221 n n 
CMB HMB2 HEB sing 222 n n 
CMB HMB3 HEB sing 223 n n 
CAB CBB HEB sing 224 n n 
CAB HAB HEB sing 225 n n 
CAB HAB2 HEB sing 226 n n 
CBB HBB1 HEB sing 227 n n 
CBB HBB2 HEB sing 228 n n 
CBB HBB3 HEB sing 229 n n 
NC C1C HEB sing 230 n y 
NC C4C HEB sing 231 n y 
C1C C2C HEB doub 232 n y 
C2C C3C HEB sing 233 n y 
C2C CMC HEB sing 234 n n 
C3C C4C HEB doub 235 n y 
C3C CAC HEB sing 236 n n 
CMC HMC1 HEB sing 237 n n 
CMC HMC2 HEB sing 238 n n 
CMC HMC3 HEB sing 239 n n 
CAC CBC HEB doub 240 n n 
CAC HAC HEB sing 241 n n 
CBC HBC1 HEB sing 242 n n 
CBC HBC2 HEB sing 243 n n 
ND C1D HEB sing 244 n n 
ND C4D HEB doub 245 n n 
C1D C2D HEB sing 246 n n 
C2D C3D HEB doub 247 n n 
C2D CMD HEB sing 248 n n 
C3D C4D HEB sing 249 n n 
C3D CAD HEB sing 250 n n 
CMD HMD1 HEB sing 251 n n 
CMD HMD2 HEB sing 252 n n 
CMD HMD3 HEB sing 253 n n 
CAD CBD HEB sing 254 n n 
CAD HAD1 HEB sing 255 n n 
CAD HAD2 HEB sing 256 n n 
CBD CGD HEB sing 257 n n 
CBD HBD1 HEB sing 258 n n 
CBD HBD2 HEB sing 259 n n 
CGD O1D HEB doub 260 n n 
CGD O2D HEB sing 261 n n 
O2D H2D HEB sing 262 n n 
#
_atom_sites.entry_id                     7ZDL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEB C 1 601 1 HEB HEB . 
D 4 MG C 1 602 1 MG MG . 
E 5 ANP C 1 603 3 ANP ANP . 
F 4 MG D 1 601 2 MG MG . 
G 5 ANP D 1 602 4 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . C 3 114.961 125.241 135.753 1 37.77 ? FE HEB 601 C 1 
HETATM 2 C CHA HEB . . . C 3 111.709 126.677 136.892 1 37.77 ? CHA HEB 601 C 1 
HETATM 3 C CHB HEB . . . C 3 113.429 121.902 135.449 1 37.77 ? CHB HEB 601 C 1 
HETATM 4 C CHC HEB . . . C 3 118.198 123.896 134.625 1 37.77 ? CHC HEB 601 C 1 
HETATM 5 C CHD HEB . . . C 3 116.628 128.647 136.024 1 37.77 ? CHD HEB 601 C 1 
HETATM 6 N NA HEB . . . C 3 113.006 124.51 136.102 1 37.77 ? NA HEB 601 C 1 
HETATM 7 C C1A HEB . . . C 3 111.85 125.256 136.557 1 37.77 ? C1A HEB 601 C 1 
HETATM 8 C C2A HEB . . . C 3 110.973 124.283 136.585 1 37.77 ? C2A HEB 601 C 1 
HETATM 9 C C3A HEB . . . C 3 111.277 123.126 136.265 1 37.77 ? C3A HEB 601 C 1 
HETATM 10 C C4A HEB . . . C 3 112.583 123.031 135.903 1 37.77 ? C4A HEB 601 C 1 
HETATM 11 C CMA HEB . . . C 3 110.31 121.946 136.271 1 37.77 ? CMA HEB 601 C 1 
HETATM 12 C CAA HEB . . . C 3 109.545 124.604 137.025 1 37.77 ? CAA HEB 601 C 1 
HETATM 13 C CBA HEB . . . C 3 108.67 124.782 135.796 1 37.77 ? CBA HEB 601 C 1 
HETATM 14 C CGA HEB . . . C 3 107.703 123.616 135.711 1 37.77 ? CGA HEB 601 C 1 
HETATM 15 O O1A HEB . . . C 3 107.297 123.21 134.587 1 37.77 ? O1A HEB 601 C 1 
HETATM 16 O O2A HEB . . . C 3 107.302 123.056 136.769 1 37.77 ? O2A HEB 601 C 1 
HETATM 17 N NB HEB . . . C 3 115.668 123.295 135.156 1 37.77 ? NB HEB 601 C 1 
HETATM 18 C C1B HEB . . . C 3 114.863 122.058 135.108 1 37.77 ? C1B HEB 601 C 1 
HETATM 19 C C2B HEB . . . C 3 115.784 121.24 134.7 1 37.77 ? C2B HEB 601 C 1 
HETATM 20 C C3B HEB . . . C 3 116.931 121.635 134.483 1 37.77 ? C3B HEB 601 C 1 
HETATM 21 C C4B HEB . . . C 3 117.063 122.974 134.729 1 37.77 ? C4B HEB 601 C 1 
HETATM 22 C CMB HEB . . . C 3 115.456 119.789 134.482 1 37.77 ? CMB HEB 601 C 1 
HETATM 23 C CAB HEB . . . C 3 118.053 120.741 134.006 1 37.77 ? CAB HEB 601 C 1 
HETATM 24 C CBB HEB . . . C 3 118.646 120.016 135.19 1 37.77 ? CBB HEB 601 C 1 
HETATM 25 N NC HEB . . . C 3 116.89 126.156 135.439 1 37.77 ? NC HEB 601 C 1 
HETATM 26 C C1C HEB . . . C 3 118.097 125.368 134.96 1 37.77 ? C1C HEB 601 C 1 
HETATM 27 C C2C HEB . . . C 3 118.962 126.235 134.914 1 37.77 ? C2C HEB 601 C 1 
HETATM 28 C C3C HEB . . . C 3 118.7 127.388 135.227 1 37.77 ? C3C HEB 601 C 1 
HETATM 29 C C4C HEB . . . C 3 117.329 127.541 135.612 1 37.77 ? C4C HEB 601 C 1 
HETATM 30 C CMC HEB . . . C 3 120.366 125.872 134.473 1 37.77 ? CMC HEB 601 C 1 
HETATM 31 C CAC HEB . . . C 3 119.682 128.528 135.207 1 37.77 ? CAC HEB 601 C 1 
HETATM 32 C CBC HEB . . . C 3 119.045 129.812 134.708 1 37.77 ? CBC HEB 601 C 1 
HETATM 33 N ND HEB . . . C 3 114.328 127.417 136.366 1 37.77 ? ND HEB 601 C 1 
HETATM 34 C C1D HEB . . . C 3 115.179 128.576 136.387 1 37.77 ? C1D HEB 601 C 1 
HETATM 35 C C2D HEB . . . C 3 114.271 129.453 136.804 1 37.77 ? C2D HEB 601 C 1 
HETATM 36 C C3D HEB . . . C 3 112.966 129.12 137.078 1 37.77 ? C3D HEB 601 C 1 
HETATM 37 C C4D HEB . . . C 3 112.884 127.685 136.797 1 37.77 ? C4D HEB 601 C 1 
HETATM 38 C CMD HEB . . . C 3 114.698 130.878 136.993 1 37.77 ? CMD HEB 601 C 1 
HETATM 39 C CAD HEB . . . C 3 111.838 130.029 137.558 1 37.77 ? CAD HEB 601 C 1 
HETATM 40 C CBD HEB . . . C 3 110.558 129.221 137.581 1 37.77 ? CBD HEB 601 C 1 
HETATM 41 C CGD HEB . . . C 3 109.853 129.464 138.905 1 37.77 ? CGD HEB 601 C 1 
HETATM 42 O O1D HEB . . . C 3 109.667 130.641 139.303 1 37.77 ? O1D HEB 601 C 1 
HETATM 43 O O2D HEB . . . C 3 109.469 128.491 139.603 1 37.77 ? O2D HEB 601 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           43 
#