data_7ZEC
#
_model_server_result.job_id            L0dcW-84HH5v7OugpYVyGw 
_model_server_result.datetime_utc      '2025-04-09 00:32:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7ZEC 
#
_exptl.entry_id    7ZEC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 C HIS 85 1_555 C FE HEB . D HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc2 B NE2 HIS 312 D HIS 312 1_555 C FE HEB . D HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc3 B OG SER 390 D SER 390 1_555 D MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc4 B OE1 GLN 430 D GLN 430 1_555 D MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc5 D MG MG . D MG 602 1_555 E O3G ATP . D ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc6 D MG MG . D MG 602 1_555 E O2B ATP . D ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 178 n n 
FE NB HEB sing 179 n n 
FE NC HEB sing 180 n n 
FE ND HEB sing 181 n n 
CHA C1A HEB doub 182 n n 
CHA C4D HEB sing 183 n n 
CHA HHA HEB sing 184 n n 
CHB C4A HEB doub 185 n n 
CHB C1B HEB sing 186 n n 
CHB HHB HEB sing 187 n n 
CHC C4B HEB doub 188 n n 
CHC C1C HEB sing 189 n n 
CHC HHC HEB sing 190 n n 
CHD C4C HEB sing 191 n n 
CHD C1D HEB doub 192 n n 
CHD HHD HEB sing 193 n n 
NA C1A HEB sing 194 n n 
NA C4A HEB sing 195 n n 
C1A C2A HEB sing 196 n n 
C2A C3A HEB doub 197 n n 
C2A CAA HEB sing 198 n n 
C3A C4A HEB sing 199 n n 
C3A CMA HEB sing 200 n n 
CMA HMA1 HEB sing 201 n n 
CMA HMA2 HEB sing 202 n n 
CMA HMA3 HEB sing 203 n n 
CAA CBA HEB sing 204 n n 
CAA HAA1 HEB sing 205 n n 
CAA HAA2 HEB sing 206 n n 
CBA CGA HEB sing 207 n n 
CBA HBA1 HEB sing 208 n n 
CBA HBA2 HEB sing 209 n n 
CGA O1A HEB doub 210 n n 
CGA O2A HEB sing 211 n n 
O2A H2A HEB sing 212 n n 
NB C1B HEB doub 213 n n 
NB C4B HEB sing 214 n n 
C1B C2B HEB sing 215 n n 
C2B C3B HEB doub 216 n n 
C2B CMB HEB sing 217 n n 
C3B C4B HEB sing 218 n n 
C3B CAB HEB sing 219 n n 
CMB HMB1 HEB sing 220 n n 
CMB HMB2 HEB sing 221 n n 
CMB HMB3 HEB sing 222 n n 
CAB CBB HEB sing 223 n n 
CAB HAB HEB sing 224 n n 
CAB HAB2 HEB sing 225 n n 
CBB HBB1 HEB sing 226 n n 
CBB HBB2 HEB sing 227 n n 
CBB HBB3 HEB sing 228 n n 
NC C1C HEB sing 229 n y 
NC C4C HEB sing 230 n y 
C1C C2C HEB doub 231 n y 
C2C C3C HEB sing 232 n y 
C2C CMC HEB sing 233 n n 
C3C C4C HEB doub 234 n y 
C3C CAC HEB sing 235 n n 
CMC HMC1 HEB sing 236 n n 
CMC HMC2 HEB sing 237 n n 
CMC HMC3 HEB sing 238 n n 
CAC CBC HEB doub 239 n n 
CAC HAC HEB sing 240 n n 
CBC HBC1 HEB sing 241 n n 
CBC HBC2 HEB sing 242 n n 
ND C1D HEB sing 243 n n 
ND C4D HEB doub 244 n n 
C1D C2D HEB sing 245 n n 
C2D C3D HEB doub 246 n n 
C2D CMD HEB sing 247 n n 
C3D C4D HEB sing 248 n n 
C3D CAD HEB sing 249 n n 
CMD HMD1 HEB sing 250 n n 
CMD HMD2 HEB sing 251 n n 
CMD HMD3 HEB sing 252 n n 
CAD CBD HEB sing 253 n n 
CAD HAD1 HEB sing 254 n n 
CAD HAD2 HEB sing 255 n n 
CBD CGD HEB sing 256 n n 
CBD HBD1 HEB sing 257 n n 
CBD HBD2 HEB sing 258 n n 
CGD O1D HEB doub 259 n n 
CGD O2D HEB sing 260 n n 
O2D H2D HEB sing 261 n n 
#
_atom_sites.entry_id                     7ZEC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEB D 1 601 1 HEB HEB . 
D 4 MG D 1 602 1 MG MG . 
E 5 ATP D 1 603 2 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . C 3 111.559 128.295 133.991 1 14.14 ? FE HEB 601 D 1 
HETATM 2 C CHA HEB . . . C 3 108.194 128.53 135.602 1 14.14 ? CHA HEB 601 D 1 
HETATM 3 C CHB HEB . . . C 3 112.094 124.963 135.483 1 14.14 ? CHB HEB 601 D 1 
HETATM 4 C CHC HEB . . . C 3 114.878 128.128 132.369 1 14.14 ? CHC HEB 601 D 1 
HETATM 5 C CHD HEB . . . C 3 111.115 131.724 132.401 1 14.14 ? CHD HEB 601 D 1 
HETATM 6 N NA HEB . . . C 3 110.375 127.068 135.253 1 14.14 ? NA HEB 601 D 1 
HETATM 7 C C1A HEB . . . C 3 109.053 127.351 135.784 1 14.14 ? C1A HEB 601 D 1 
HETATM 8 C C2A HEB . . . C 3 108.863 126.243 136.47 1 14.14 ? C2A HEB 601 D 1 
HETATM 9 C C3A HEB . . . C 3 109.718 125.346 136.505 1 14.14 ? C3A HEB 601 D 1 
HETATM 10 C C4A HEB . . . C 3 110.817 125.669 135.767 1 14.14 ? C4A HEB 601 D 1 
HETATM 11 C CMA HEB . . . C 3 109.56 124.039 137.28 1 14.14 ? CMA HEB 601 D 1 
HETATM 12 C CAA HEB . . . C 3 107.552 126.06 137.243 1 14.14 ? CAA HEB 601 D 1 
HETATM 13 C CBA HEB . . . C 3 106.435 125.699 136.271 1 14.14 ? CBA HEB 601 D 1 
HETATM 14 C CGA HEB . . . C 3 106.483 124.21 135.976 1 14.14 ? CGA HEB 601 D 1 
HETATM 15 O O1A HEB . . . C 3 106.543 123.381 136.926 1 14.14 ? O1A HEB 601 D 1 
HETATM 16 O O2A HEB . . . C 3 106.464 123.802 134.782 1 14.14 ? O2A HEB 601 D 1 
HETATM 17 N NB HEB . . . C 3 113.159 126.843 133.937 1 14.14 ? NB HEB 601 D 1 
HETATM 18 C C1B HEB . . . C 3 113.165 125.534 134.628 1 14.14 ? C1B HEB 601 D 1 
HETATM 19 C C2B HEB . . . C 3 114.336 125.111 134.249 1 14.14 ? C2B HEB 601 D 1 
HETATM 20 C C3B HEB . . . C 3 115.053 125.801 133.513 1 14.14 ? C3B HEB 601 D 1 
HETATM 21 C C4B HEB . . . C 3 114.451 126.991 133.192 1 14.14 ? C4B HEB 601 D 1 
HETATM 22 C CMB HEB . . . C 3 114.825 123.763 134.712 1 14.14 ? CMB HEB 601 D 1 
HETATM 23 C CAB HEB . . . C 3 116.427 125.381 133.028 1 14.14 ? CAB HEB 601 D 1 
HETATM 24 C CBB HEB . . . C 3 116.431 125.322 131.518 1 14.14 ? CBB HEB 601 D 1 
HETATM 25 N NC HEB . . . C 3 112.636 129.669 132.707 1 14.14 ? NC HEB 601 D 1 
HETATM 26 C C1C HEB . . . C 3 114.022 129.361 132.156 1 14.14 ? C1C HEB 601 D 1 
HETATM 27 C C2C HEB . . . C 3 114.265 130.367 131.496 1 14.14 ? C2C HEB 601 D 1 
HETATM 28 C C3C HEB . . . C 3 113.45 131.281 131.434 1 14.14 ? C3C HEB 601 D 1 
HETATM 29 C C4C HEB . . . C 3 112.264 130.994 132.197 1 14.14 ? C4C HEB 601 D 1 
HETATM 30 C CMC HEB . . . C 3 115.585 130.483 130.755 1 14.14 ? CMC HEB 601 D 1 
HETATM 31 C CAC HEB . . . C 3 113.666 132.551 130.648 1 14.14 ? CAC HEB 601 D 1 
HETATM 32 C CBC HEB . . . C 3 114.403 133.616 131.44 1 14.14 ? CBC HEB 601 D 1 
HETATM 33 N ND HEB . . . C 3 109.907 129.967 133.956 1 14.14 ? ND HEB 601 D 1 
HETATM 34 C C1D HEB . . . C 3 109.985 131.223 133.25 1 14.14 ? C1D HEB 601 D 1 
HETATM 35 C C2D HEB . . . C 3 108.792 131.699 133.612 1 14.14 ? C2D HEB 601 D 1 
HETATM 36 C C3D HEB . . . C 3 107.914 131.016 134.428 1 14.14 ? C3D HEB 601 D 1 
HETATM 37 C C4D HEB . . . C 3 108.605 129.757 134.739 1 14.14 ? C4D HEB 601 D 1 
HETATM 38 C CMD HEB . . . C 3 108.383 133.054 133.104 1 14.14 ? CMD HEB 601 D 1 
HETATM 39 C CAD HEB . . . C 3 106.53 131.465 134.902 1 14.14 ? CAD HEB 601 D 1 
HETATM 40 C CBD HEB . . . C 3 105.47 130.579 134.276 1 14.14 ? CBD HEB 601 D 1 
HETATM 41 C CGD HEB . . . C 3 104.249 130.527 135.186 1 14.14 ? CGD HEB 601 D 1 
HETATM 42 O O1D HEB . . . C 3 104.068 129.535 135.94 1 14.14 ? O1D HEB 601 D 1 
HETATM 43 O O2D HEB . . . C 3 103.421 131.476 135.185 1 14.14 ? O2D HEB 601 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           530 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#