data_7ZF6
#
_model_server_result.job_id            zR4z1DJDPdb8pdUFIZ1c-Q 
_model_server_result.datetime_utc      '2024-11-16 08:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7ZF6 
#
_exptl.entry_id    7ZF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZF6 
_cell.length_a            64.996 
_cell.length_b            209.624 
_cell.length_c            86.137 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 101 H CYS 101 1_555 A SG CYS 106 H CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 150 H CYS 150 1_555 A SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 102 H ASN 102 1_555 C C1 NAG . H NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 270 n n 
C1 O1 NAG sing 271 n n 
C1 O5 NAG sing 272 n n 
C1 H1 NAG sing 273 n n 
C2 C3 NAG sing 274 n n 
C2 N2 NAG sing 275 n n 
C2 H2 NAG sing 276 n n 
C3 C4 NAG sing 277 n n 
C3 O3 NAG sing 278 n n 
C3 H3 NAG sing 279 n n 
C4 C5 NAG sing 280 n n 
C4 O4 NAG sing 281 n n 
C4 H4 NAG sing 282 n n 
C5 C6 NAG sing 283 n n 
C5 O5 NAG sing 284 n n 
C5 H5 NAG sing 285 n n 
C6 O6 NAG sing 286 n n 
C6 H61 NAG sing 287 n n 
C6 H62 NAG sing 288 n n 
C7 C8 NAG sing 289 n n 
C7 N2 NAG sing 290 n n 
C7 O7 NAG doub 291 n n 
C8 H81 NAG sing 292 n n 
C8 H82 NAG sing 293 n n 
C8 H83 NAG sing 294 n n 
N2 HN2 NAG sing 295 n n 
O1 HO1 NAG sing 296 n n 
O3 HO3 NAG sing 297 n n 
O4 HO4 NAG sing 298 n n 
O6 HO6 NAG sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7ZF6 
_atom_sites.fract_transf_matrix[1][1]    0.015386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG H 1 401 401 NAG NAG . 
D 4 GOL H 1 402 401 GOL GOL . 
E 5 SO4 H 1 403 11 SO4 SO4 . 
F 4 GOL L 1 301 301 GOL GOL . 
G 4 GOL L 1 302 501 GOL GOL . 
H 6 CIT L 1 303 601 CIT CIT . 
I 5 SO4 L 1 304 1 SO4 SO4 . 
J 5 SO4 L 1 305 2 SO4 SO4 . 
K 5 SO4 L 1 306 4 SO4 SO4 . 
L 5 SO4 L 1 307 5 SO4 SO4 . 
M 5 SO4 L 1 308 6 SO4 SO4 . 
N 5 SO4 L 1 309 7 SO4 SO4 . 
O 5 SO4 L 1 310 8 SO4 SO4 . 
P 5 SO4 L 1 311 9 SO4 SO4 . 
Q 5 SO4 L 1 312 10 SO4 SO4 . 
R 7 HOH H 1 501 36 HOH HOH . 
R 7 HOH H 2 502 7 HOH HOH . 
R 7 HOH H 3 503 12 HOH HOH . 
R 7 HOH H 4 504 1 HOH HOH . 
R 7 HOH H 5 505 3 HOH HOH . 
R 7 HOH H 6 506 32 HOH HOH . 
R 7 HOH H 7 507 38 HOH HOH . 
R 7 HOH H 8 508 37 HOH HOH . 
R 7 HOH H 9 509 33 HOH HOH . 
R 7 HOH H 10 510 35 HOH HOH . 
R 7 HOH H 11 511 11 HOH HOH . 
R 7 HOH H 12 512 18 HOH HOH . 
R 7 HOH H 13 513 15 HOH HOH . 
R 7 HOH H 14 514 14 HOH HOH . 
R 7 HOH H 15 515 30 HOH HOH . 
R 7 HOH H 16 516 28 HOH HOH . 
R 7 HOH H 17 517 29 HOH HOH . 
R 7 HOH H 18 518 24 HOH HOH . 
S 7 HOH L 1 401 16 HOH HOH . 
S 7 HOH L 2 402 23 HOH HOH . 
S 7 HOH L 3 403 2 HOH HOH . 
S 7 HOH L 4 404 5 HOH HOH . 
S 7 HOH L 5 405 9 HOH HOH . 
S 7 HOH L 6 406 8 HOH HOH . 
S 7 HOH L 7 407 6 HOH HOH . 
S 7 HOH L 8 408 26 HOH HOH . 
S 7 HOH L 9 409 22 HOH HOH . 
S 7 HOH L 10 410 20 HOH HOH . 
S 7 HOH L 11 411 4 HOH HOH . 
S 7 HOH L 12 412 13 HOH HOH . 
S 7 HOH L 13 413 19 HOH HOH . 
S 7 HOH L 14 414 27 HOH HOH . 
S 7 HOH L 15 415 25 HOH HOH . 
S 7 HOH L 16 416 10 HOH HOH . 
S 7 HOH L 17 417 17 HOH HOH . 
S 7 HOH L 18 418 34 HOH HOH . 
S 7 HOH L 19 419 21 HOH HOH . 
S 7 HOH L 20 420 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 33.471 1.505 10.663 1 95.75 ? C1 NAG 401 H 1 
HETATM 2 C C2 NAG . . . C 3 34.744 0.833 11.197 1 101.13 ? C2 NAG 401 H 1 
HETATM 3 C C3 NAG . . . C 3 34.408 -0.132 12.333 1 101.73 ? C3 NAG 401 H 1 
HETATM 4 C C4 NAG . . . C 3 33.595 0.572 13.41 1 101.38 ? C4 NAG 401 H 1 
HETATM 5 C C5 NAG . . . C 3 32.356 1.205 12.788 1 96.49 ? C5 NAG 401 H 1 
HETATM 6 C C6 NAG . . . C 3 31.535 1.999 13.777 1 101.85 ? C6 NAG 401 H 1 
HETATM 7 C C7 NAG . . . C 3 36.345 0.738 9.335 1 103.37 ? C7 NAG 401 H 1 
HETATM 8 C C8 NAG . . . C 3 36.982 -0.133 8.294 1 98.22 ? C8 NAG 401 H 1 
HETATM 9 N N2 NAG . . . C 3 35.455 0.14 10.134 1 100.77 ? N2 NAG 401 H 1 
HETATM 10 O O3 NAG . . . C 3 35.613 -0.642 12.893 1 90.52 ? O3 NAG 401 H 1 
HETATM 11 O O4 NAG . . . C 3 33.204 -0.357 14.415 1 99.25 ? O4 NAG 401 H 1 
HETATM 12 O O5 NAG . . . C 3 32.751 2.115 11.751 1 101.6 ? O5 NAG 401 H 1 
HETATM 13 O O6 NAG . . . C 3 30.244 2.294 13.262 1 99.9 ? O6 NAG 401 H 1 
HETATM 14 O O7 NAG . . . C 3 36.621 1.929 9.445 1 104.78 ? O7 NAG 401 H 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#