data_7ZF6
#
_model_server_result.job_id            QmmEw2QKJV3Oof7VKvh1vA 
_model_server_result.datetime_utc      '2024-11-16 08:49:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zf6 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
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_entry.id    7ZF6 
#
_exptl.entry_id    7ZF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZF6 
_cell.length_a            64.996 
_cell.length_b            209.624 
_cell.length_c            86.137 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7ZF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
? 4 G N N 
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loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 101 H CYS 101 1_555 A SG CYS 106 H CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 150 H CYS 150 1_555 A SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 102 H ASN 102 1_555 C C1 NAG . H NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     7ZF6 
_atom_sites.fract_transf_matrix[1][1]    0.015386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG H 1 401 401 NAG NAG . 
D 4 GOL H 1 402 401 GOL GOL . 
E 5 SO4 H 1 403 11 SO4 SO4 . 
F 4 GOL L 1 301 301 GOL GOL . 
G 4 GOL L 1 302 501 GOL GOL . 
H 6 CIT L 1 303 601 CIT CIT . 
I 5 SO4 L 1 304 1 SO4 SO4 . 
J 5 SO4 L 1 305 2 SO4 SO4 . 
K 5 SO4 L 1 306 4 SO4 SO4 . 
L 5 SO4 L 1 307 5 SO4 SO4 . 
M 5 SO4 L 1 308 6 SO4 SO4 . 
N 5 SO4 L 1 309 7 SO4 SO4 . 
O 5 SO4 L 1 310 8 SO4 SO4 . 
P 5 SO4 L 1 311 9 SO4 SO4 . 
Q 5 SO4 L 1 312 10 SO4 SO4 . 
R 7 HOH H 1 501 36 HOH HOH . 
R 7 HOH H 2 502 7 HOH HOH . 
R 7 HOH H 3 503 12 HOH HOH . 
R 7 HOH H 4 504 1 HOH HOH . 
R 7 HOH H 5 505 3 HOH HOH . 
R 7 HOH H 6 506 32 HOH HOH . 
R 7 HOH H 7 507 38 HOH HOH . 
R 7 HOH H 8 508 37 HOH HOH . 
R 7 HOH H 9 509 33 HOH HOH . 
R 7 HOH H 10 510 35 HOH HOH . 
R 7 HOH H 11 511 11 HOH HOH . 
R 7 HOH H 12 512 18 HOH HOH . 
R 7 HOH H 13 513 15 HOH HOH . 
R 7 HOH H 14 514 14 HOH HOH . 
R 7 HOH H 15 515 30 HOH HOH . 
R 7 HOH H 16 516 28 HOH HOH . 
R 7 HOH H 17 517 29 HOH HOH . 
R 7 HOH H 18 518 24 HOH HOH . 
S 7 HOH L 1 401 16 HOH HOH . 
S 7 HOH L 2 402 23 HOH HOH . 
S 7 HOH L 3 403 2 HOH HOH . 
S 7 HOH L 4 404 5 HOH HOH . 
S 7 HOH L 5 405 9 HOH HOH . 
S 7 HOH L 6 406 8 HOH HOH . 
S 7 HOH L 7 407 6 HOH HOH . 
S 7 HOH L 8 408 26 HOH HOH . 
S 7 HOH L 9 409 22 HOH HOH . 
S 7 HOH L 10 410 20 HOH HOH . 
S 7 HOH L 11 411 4 HOH HOH . 
S 7 HOH L 12 412 13 HOH HOH . 
S 7 HOH L 13 413 19 HOH HOH . 
S 7 HOH L 14 414 27 HOH HOH . 
S 7 HOH L 15 415 25 HOH HOH . 
S 7 HOH L 16 416 10 HOH HOH . 
S 7 HOH L 17 417 17 HOH HOH . 
S 7 HOH L 18 418 34 HOH HOH . 
S 7 HOH L 19 419 21 HOH HOH . 
S 7 HOH L 20 420 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 19.533 2.829 4.307 1 65.9 ? C1 GOL 402 H 1 
HETATM 2 O O1 GOL . . . D 4 20.156 2.584 5.528 1 73.2 ? O1 GOL 402 H 1 
HETATM 3 C C2 GOL . . . D 4 18.125 3.386 4.623 1 74.27 ? C2 GOL 402 H 1 
HETATM 4 O O2 GOL . . . D 4 17.661 4.208 3.608 1 76.66 ? O2 GOL 402 H 1 
HETATM 5 C C3 GOL . . . D 4 17.237 2.131 4.814 1 80.49 ? C3 GOL 402 H 1 
HETATM 6 O O3 GOL . . . D 4 15.94 2.577 5.081 1 72.4 ? O3 GOL 402 H 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
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