data_7ZFF # _model_server_result.job_id BvPlZAM6YFK2Gc1dPxS0LQ _model_server_result.datetime_utc '2024-10-21 02:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 7ZFF # _exptl.entry_id 7ZFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.593 _cell.angle_gamma 90 _cell.entry_id 7ZFF _cell.length_a 63.83 _cell.length_b 49.38 _cell.length_c 72.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 152 H CYS 152 1_555 B SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7ZFF _atom_sites.fract_transf_matrix[1][1] 0.015667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 301 GOL GOL . D 3 GOL L 1 302 501 GOL GOL . E 3 GOL L 1 303 601 GOL GOL . F 3 GOL L 1 304 701 GOL GOL . G 3 GOL L 1 305 801 GOL GOL . H 3 GOL H 1 401 401 GOL GOL . I 3 GOL H 1 402 301 GOL GOL . J 3 GOL H 1 403 401 GOL GOL . K 4 HOH L 1 401 40 HOH HOH . K 4 HOH L 2 402 31 HOH HOH . K 4 HOH L 3 403 15 HOH HOH . K 4 HOH L 4 404 6 HOH HOH . K 4 HOH L 5 405 30 HOH HOH . K 4 HOH L 6 406 49 HOH HOH . K 4 HOH L 7 407 25 HOH HOH . K 4 HOH L 8 408 38 HOH HOH . K 4 HOH L 9 409 10 HOH HOH . K 4 HOH L 10 410 39 HOH HOH . K 4 HOH L 11 411 13 HOH HOH . K 4 HOH L 12 412 46 HOH HOH . K 4 HOH L 13 413 4 HOH HOH . K 4 HOH L 14 414 26 HOH HOH . K 4 HOH L 15 415 44 HOH HOH . K 4 HOH L 16 416 18 HOH HOH . K 4 HOH L 17 417 36 HOH HOH . K 4 HOH L 18 418 21 HOH HOH . K 4 HOH L 19 419 17 HOH HOH . K 4 HOH L 20 420 37 HOH HOH . K 4 HOH L 21 421 2 HOH HOH . K 4 HOH L 22 422 24 HOH HOH . K 4 HOH L 23 423 45 HOH HOH . K 4 HOH L 24 424 35 HOH HOH . K 4 HOH L 25 425 7 HOH HOH . K 4 HOH L 26 426 27 HOH HOH . K 4 HOH L 27 427 47 HOH HOH . K 4 HOH L 28 428 8 HOH HOH . K 4 HOH L 29 429 29 HOH HOH . K 4 HOH L 30 430 54 HOH HOH . K 4 HOH L 31 431 55 HOH HOH . K 4 HOH L 32 432 51 HOH HOH . L 4 HOH H 1 501 48 HOH HOH . L 4 HOH H 2 502 16 HOH HOH . L 4 HOH H 3 503 53 HOH HOH . L 4 HOH H 4 504 9 HOH HOH . L 4 HOH H 5 505 28 HOH HOH . L 4 HOH H 6 506 34 HOH HOH . L 4 HOH H 7 507 5 HOH HOH . L 4 HOH H 8 508 14 HOH HOH . L 4 HOH H 9 509 19 HOH HOH . L 4 HOH H 10 510 1 HOH HOH . L 4 HOH H 11 511 41 HOH HOH . L 4 HOH H 12 512 11 HOH HOH . L 4 HOH H 13 513 20 HOH HOH . L 4 HOH H 14 514 3 HOH HOH . L 4 HOH H 15 515 33 HOH HOH . L 4 HOH H 16 516 12 HOH HOH . L 4 HOH H 17 517 52 HOH HOH . L 4 HOH H 18 518 23 HOH HOH . L 4 HOH H 19 519 43 HOH HOH . L 4 HOH H 20 520 32 HOH HOH . L 4 HOH H 21 521 42 HOH HOH . L 4 HOH H 22 522 22 HOH HOH . L 4 HOH H 23 523 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -7.159 -6.58 15.867 1 73.95 ? C1 GOL 401 H 1 HETATM 2 O O1 GOL . . . H 3 -6.149 -6.824 16.79 1 78.76 ? O1 GOL 401 H 1 HETATM 3 C C2 GOL . . . H 3 -8.351 -7.476 16.263 1 78.73 ? C2 GOL 401 H 1 HETATM 4 O O2 GOL . . . H 3 -8.73 -7.28 17.583 1 72.95 ? O2 GOL 401 H 1 HETATM 5 C C3 GOL . . . H 3 -9.471 -7.101 15.269 1 76.76 ? C3 GOL 401 H 1 HETATM 6 O O3 GOL . . . H 3 -10.671 -7.513 15.839 1 63.09 ? O3 GOL 401 H 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #