data_7ZFG
#
_model_server_result.job_id            LaQPwrl9MQrdXy0ocvD9-g 
_model_server_result.datetime_utc      '2024-10-10 05:22:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7ZFG 
#
_exptl.entry_id    7ZFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.737 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ZFG 
_cell.length_a            65.83 
_cell.length_b            65.83 
_cell.length_c            264.92 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C32 H50 O4' 
_chem_comp.formula_weight    498.737 
_chem_comp.id                IV5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 C02 IV5 sing 179 n n 
C01 C02 IV5 sing 180 n n 
C02 O04 IV5 sing 181 n n 
C02 C05 IV5 sing 182 n n 
C05 C06 IV5 sing 183 n n 
C06 C07 IV5 sing 184 n n 
C24 C22 IV5 sing 185 n n 
C23 C22 IV5 sing 186 n n 
C22 O25 IV5 sing 187 n n 
C22 C21 IV5 sing 188 n n 
C07 C08 IV5 sing 189 n n 
C20 C19 IV5 sing 190 n n 
C20 C21 IV5 sing 191 n n 
C08 C09 IV5 sing 192 n n 
C36 C35 IV5 doub 193 n n 
C19 C18 IV5 sing 194 n n 
C32 C30 IV5 sing 195 n n 
C32 C33 IV5 sing 196 n n 
C35 C28 IV5 sing 197 n n 
C35 C33 IV5 sing 198 n n 
C29 C28 IV5 sing 199 n n 
C29 C30 IV5 sing 200 n n 
C18 C17 IV5 sing 201 n n 
O34 C33 IV5 sing 202 n n 
C28 C27 IV5 doub 203 z n 
C30 O31 IV5 sing 204 n n 
C17 C16 IV5 sing 205 n n 
C09 C10 IV5 sing 206 n n 
C27 C26 IV5 sing 207 n n 
C15 C10 IV5 doub 208 n y 
C15 C14 IV5 sing 209 n y 
C16 C26 IV5 doub 210 e n 
C16 C14 IV5 sing 211 n n 
C10 C11 IV5 sing 212 n y 
C14 C13 IV5 doub 213 n y 
C11 C12 IV5 doub 214 n y 
C13 C12 IV5 sing 215 n y 
C13 H1 IV5 sing 216 n n 
C15 H2 IV5 sing 217 n n 
C17 H3 IV5 sing 218 n n 
C17 H4 IV5 sing 219 n n 
C20 H5 IV5 sing 220 n n 
C20 H6 IV5 sing 221 n n 
C21 H7 IV5 sing 222 n n 
C21 H8 IV5 sing 223 n n 
C24 H9 IV5 sing 224 n n 
C24 H10 IV5 sing 225 n n 
C24 H11 IV5 sing 226 n n 
C26 H12 IV5 sing 227 n n 
C01 H13 IV5 sing 228 n n 
C01 H14 IV5 sing 229 n n 
C01 H15 IV5 sing 230 n n 
C03 H16 IV5 sing 231 n n 
C03 H17 IV5 sing 232 n n 
C03 H18 IV5 sing 233 n n 
C05 H19 IV5 sing 234 n n 
C05 H20 IV5 sing 235 n n 
C06 H21 IV5 sing 236 n n 
C06 H22 IV5 sing 237 n n 
C07 H23 IV5 sing 238 n n 
C07 H24 IV5 sing 239 n n 
C08 H25 IV5 sing 240 n n 
C08 H26 IV5 sing 241 n n 
C09 H27 IV5 sing 242 n n 
C09 H28 IV5 sing 243 n n 
C11 H29 IV5 sing 244 n n 
C12 H30 IV5 sing 245 n n 
C18 H31 IV5 sing 246 n n 
C18 H32 IV5 sing 247 n n 
C19 H33 IV5 sing 248 n n 
C19 H34 IV5 sing 249 n n 
C23 H35 IV5 sing 250 n n 
C23 H36 IV5 sing 251 n n 
C23 H37 IV5 sing 252 n n 
C27 H38 IV5 sing 253 n n 
C29 H39 IV5 sing 254 n n 
C29 H40 IV5 sing 255 n n 
C30 H41 IV5 sing 256 n n 
C32 H42 IV5 sing 257 n n 
C32 H43 IV5 sing 258 n n 
C33 H44 IV5 sing 259 n n 
C36 H45 IV5 sing 260 n n 
C36 H46 IV5 sing 261 n n 
O04 H47 IV5 sing 262 n n 
O25 H48 IV5 sing 263 n n 
O31 H49 IV5 sing 264 n n 
O34 H50 IV5 sing 265 n n 
#
_atom_sites.entry_id                     7ZFG 
_atom_sites.fract_transf_matrix[1][1]    0.015191 
_atom_sites.fract_transf_matrix[1][2]    0.00877 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017541 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 501 503 ACT ACT . 
D 4 IV5 A 1 502 1 IV5 LIG . 
E 5 HOH A 1 601 13 HOH HOH . 
E 5 HOH A 2 602 19 HOH HOH . 
E 5 HOH A 3 603 1 HOH HOH . 
E 5 HOH A 4 604 23 HOH HOH . 
E 5 HOH A 5 605 6 HOH HOH . 
E 5 HOH A 6 606 27 HOH HOH . 
E 5 HOH A 7 607 39 HOH HOH . 
E 5 HOH A 8 608 9 HOH HOH . 
E 5 HOH A 9 609 29 HOH HOH . 
E 5 HOH A 10 610 17 HOH HOH . 
E 5 HOH A 11 611 28 HOH HOH . 
E 5 HOH A 12 612 8 HOH HOH . 
E 5 HOH A 13 613 24 HOH HOH . 
E 5 HOH A 14 614 26 HOH HOH . 
E 5 HOH A 15 615 5 HOH HOH . 
E 5 HOH A 16 616 2 HOH HOH . 
E 5 HOH A 17 617 25 HOH HOH . 
E 5 HOH A 18 618 15 HOH HOH . 
E 5 HOH A 19 619 37 HOH HOH . 
E 5 HOH A 20 620 18 HOH HOH . 
E 5 HOH A 21 621 21 HOH HOH . 
E 5 HOH A 22 622 12 HOH HOH . 
E 5 HOH A 23 623 16 HOH HOH . 
E 5 HOH A 24 624 32 HOH HOH . 
E 5 HOH A 25 625 35 HOH HOH . 
E 5 HOH A 26 626 11 HOH HOH . 
E 5 HOH A 27 627 7 HOH HOH . 
E 5 HOH A 28 628 38 HOH HOH . 
E 5 HOH A 29 629 36 HOH HOH . 
E 5 HOH A 30 630 30 HOH HOH . 
E 5 HOH A 31 631 10 HOH HOH . 
E 5 HOH A 32 632 34 HOH HOH . 
E 5 HOH A 33 633 33 HOH HOH . 
E 5 HOH A 34 634 22 HOH HOH . 
E 5 HOH A 35 635 14 HOH HOH . 
E 5 HOH A 36 636 4 HOH HOH . 
E 5 HOH A 37 637 31 HOH HOH . 
F 5 HOH B 1 801 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 IV5 . . . D 4 -26.548 17.436 -4.782 1 69.57 ? C10 IV5 502 A 1 
HETATM 2 C C13 IV5 . . . D 4 -28.622 19.19 -4.087 1 65.54 ? C13 IV5 502 A 1 
HETATM 3 C C15 IV5 . . . D 4 -27.903 17.11 -5.03 1 69.42 ? C15 IV5 502 A 1 
HETATM 4 C C17 IV5 . . . D 4 -31.186 16.263 -5.206 1 75.27 ? C17 IV5 502 A 1 
HETATM 5 C C20 IV5 . . . D 4 -29.732 13.035 -7.003 1 98.43 ? C20 IV5 502 A 1 
HETATM 6 C C21 IV5 . . . D 4 -29.89 11.589 -6.443 1 103.81 ? C21 IV5 502 A 1 
HETATM 7 C C22 IV5 . . . D 4 -29.74 10.549 -7.586 1 112.39 ? C22 IV5 502 A 1 
HETATM 8 C C24 IV5 . . . D 4 -30.748 10.844 -8.72 1 108.76 ? C24 IV5 502 A 1 
HETATM 9 C C26 IV5 . . . D 4 -31.355 18.717 -4.93 1 62.54 ? C26 IV5 502 A 1 
HETATM 10 C C28 IV5 . . . D 4 -33.612 19.491 -5.66 1 63.3 ? C28 IV5 502 A 1 
HETATM 11 C C01 IV5 . . . D 4 -23.443 16.973 -11.404 1 72.4 ? C01 IV5 502 A 1 
HETATM 12 C C02 IV5 . . . D 4 -23.23 18.305 -10.644 1 71.61 ? C02 IV5 502 A 1 
HETATM 13 C C03 IV5 . . . D 4 -23.325 19.456 -11.643 1 68.01 ? C03 IV5 502 A 1 
HETATM 14 C C05 IV5 . . . D 4 -24.361 18.5 -9.57 1 68.42 ? C05 IV5 502 A 1 
HETATM 15 C C06 IV5 . . . D 4 -24.722 17.144 -8.893 1 68.68 ? C06 IV5 502 A 1 
HETATM 16 C C07 IV5 . . . D 4 -25.519 17.353 -7.569 1 71.36 ? C07 IV5 502 A 1 
HETATM 17 C C08 IV5 . . . D 4 -25.543 16.072 -6.689 1 72.15 ? C08 IV5 502 A 1 
HETATM 18 C C09 IV5 . . . D 4 -25.414 16.43 -5.189 1 66.21 ? C09 IV5 502 A 1 
HETATM 19 C C11 IV5 . . . D 4 -26.229 18.655 -4.192 1 65.51 ? C11 IV5 502 A 1 
HETATM 20 C C12 IV5 . . . D 4 -27.273 19.528 -3.847 1 65.18 ? C12 IV5 502 A 1 
HETATM 21 C C14 IV5 . . . D 4 -28.963 17.969 -4.673 1 67.8 ? C14 IV5 502 A 1 
HETATM 22 C C16 IV5 . . . D 4 -30.515 17.669 -4.934 1 68.65 ? C16 IV5 502 A 1 
HETATM 23 C C18 IV5 . . . D 4 -30.213 15.153 -5.69 1 77.77 ? C18 IV5 502 A 1 
HETATM 24 C C19 IV5 . . . D 4 -30.858 14.006 -6.521 1 89.79 ? C19 IV5 502 A 1 
HETATM 25 C C23 IV5 . . . D 4 -28.306 10.669 -8.145 1 106.35 ? C23 IV5 502 A 1 
HETATM 26 C C27 IV5 . . . D 4 -32.869 18.496 -5.183 1 62.29 ? C27 IV5 502 A 1 
HETATM 27 C C29 IV5 . . . D 4 -35.01 19.32 -5.817 1 65.14 ? C29 IV5 502 A 1 
HETATM 28 C C30 IV5 . . . D 4 -35.884 20.67 -5.394 1 69.13 ? C30 IV5 502 A 1 
HETATM 29 C C32 IV5 . . . D 4 -35.41 21.759 -5.926 1 61.32 ? C32 IV5 502 A 1 
HETATM 30 C C33 IV5 . . . D 4 -33.87 21.963 -5.336 1 58.98 ? C33 IV5 502 A 1 
HETATM 31 C C35 IV5 . . . D 4 -33.04 20.955 -5.821 1 59.09 ? C35 IV5 502 A 1 
HETATM 32 C C36 IV5 . . . D 4 -32.031 21.227 -6.648 1 54.37 ? C36 IV5 502 A 1 
HETATM 33 O O04 IV5 . . . D 4 -21.974 18.278 -10.008 1 69.46 ? O04 IV5 502 A 1 
HETATM 34 O O25 IV5 . . . D 4 -29.999 9.271 -7.07 1 116.22 ? O25 IV5 502 A 1 
HETATM 35 O O31 IV5 . . . D 4 -35.808 20.774 -3.913 1 69.29 ? O31 IV5 502 A 1 
HETATM 36 O O34 IV5 . . . D 4 -33.387 23.232 -5.686 1 61.29 ? O34 IV5 502 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#