data_7ZG3 # _model_server_result.job_id 0q9_rMhCDKM8zOf1hsRP8w _model_server_result.datetime_utc '2024-11-15 21:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 7ZG3 # _exptl.entry_id 7ZG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZG3 _cell.length_a 80.79 _cell.length_b 81.318 _cell.length_c 169.905 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 E NI NI . A NI 402 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZG3 _atom_sites.fract_transf_matrix[1][1] 0.012378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IUX A 1 401 401 IUX LIG . E 3 NI A 1 402 1 NI NI . F 2 IUX B 1 401 401 IUX LIG . G 2 IUX C 1 401 401 IUX LIG . H 4 HOH A 1 501 85 HOH HOH . H 4 HOH A 2 502 98 HOH HOH . H 4 HOH A 3 503 1 HOH HOH . H 4 HOH A 4 504 26 HOH HOH . H 4 HOH A 5 505 29 HOH HOH . H 4 HOH A 6 506 34 HOH HOH . H 4 HOH A 7 507 105 HOH HOH . H 4 HOH A 8 508 109 HOH HOH . H 4 HOH A 9 509 44 HOH HOH . H 4 HOH A 10 510 24 HOH HOH . H 4 HOH A 11 511 25 HOH HOH . H 4 HOH A 12 512 90 HOH HOH . H 4 HOH A 13 513 15 HOH HOH . H 4 HOH A 14 514 96 HOH HOH . H 4 HOH A 15 515 156 HOH HOH . H 4 HOH A 16 516 72 HOH HOH . H 4 HOH A 17 517 28 HOH HOH . H 4 HOH A 18 518 151 HOH HOH . H 4 HOH A 19 519 100 HOH HOH . H 4 HOH A 20 520 27 HOH HOH . H 4 HOH A 21 521 52 HOH HOH . H 4 HOH A 22 522 103 HOH HOH . H 4 HOH A 23 523 108 HOH HOH . H 4 HOH A 24 524 107 HOH HOH . H 4 HOH A 25 525 60 HOH HOH . H 4 HOH A 26 526 152 HOH HOH . H 4 HOH A 27 527 101 HOH HOH . H 4 HOH A 28 528 66 HOH HOH . H 4 HOH A 29 529 104 HOH HOH . H 4 HOH A 30 530 159 HOH HOH . H 4 HOH A 31 531 102 HOH HOH . I 4 HOH B 1 501 12 HOH HOH . I 4 HOH B 2 502 41 HOH HOH . I 4 HOH B 3 503 10 HOH HOH . I 4 HOH B 4 504 6 HOH HOH . I 4 HOH B 5 505 62 HOH HOH . I 4 HOH B 6 506 126 HOH HOH . I 4 HOH B 7 507 121 HOH HOH . I 4 HOH B 8 508 56 HOH HOH . I 4 HOH B 9 509 13 HOH HOH . I 4 HOH B 10 510 55 HOH HOH . I 4 HOH B 11 511 129 HOH HOH . I 4 HOH B 12 512 117 HOH HOH . I 4 HOH B 13 513 37 HOH HOH . I 4 HOH B 14 514 51 HOH HOH . I 4 HOH B 15 515 70 HOH HOH . I 4 HOH B 16 516 35 HOH HOH . I 4 HOH B 17 517 57 HOH HOH . I 4 HOH B 18 518 127 HOH HOH . I 4 HOH B 19 519 118 HOH HOH . I 4 HOH B 20 520 154 HOH HOH . I 4 HOH B 21 521 43 HOH HOH . I 4 HOH B 22 522 128 HOH HOH . I 4 HOH B 23 523 124 HOH HOH . I 4 HOH B 24 524 123 HOH HOH . I 4 HOH B 25 525 155 HOH HOH . I 4 HOH B 26 526 74 HOH HOH . I 4 HOH B 27 527 9 HOH HOH . I 4 HOH B 28 528 63 HOH HOH . I 4 HOH B 29 529 120 HOH HOH . I 4 HOH B 30 530 116 HOH HOH . I 4 HOH B 31 531 119 HOH HOH . I 4 HOH B 32 532 153 HOH HOH . I 4 HOH B 33 533 61 HOH HOH . I 4 HOH B 34 534 122 HOH HOH . I 4 HOH B 35 535 115 HOH HOH . I 4 HOH B 36 536 125 HOH HOH . J 4 HOH C 1 501 79 HOH HOH . J 4 HOH C 2 502 75 HOH HOH . J 4 HOH C 3 503 17 HOH HOH . J 4 HOH C 4 504 130 HOH HOH . J 4 HOH C 5 505 82 HOH HOH . J 4 HOH C 6 506 38 HOH HOH . J 4 HOH C 7 507 14 HOH HOH . J 4 HOH C 8 508 114 HOH HOH . J 4 HOH C 9 509 143 HOH HOH . J 4 HOH C 10 510 86 HOH HOH . J 4 HOH C 11 511 33 HOH HOH . J 4 HOH C 12 512 32 HOH HOH . J 4 HOH C 13 513 49 HOH HOH . J 4 HOH C 14 514 5 HOH HOH . J 4 HOH C 15 515 76 HOH HOH . J 4 HOH C 16 516 77 HOH HOH . J 4 HOH C 17 517 7 HOH HOH . J 4 HOH C 18 518 83 HOH HOH . J 4 HOH C 19 519 97 HOH HOH . J 4 HOH C 20 520 89 HOH HOH . J 4 HOH C 21 521 113 HOH HOH . J 4 HOH C 22 522 30 HOH HOH . J 4 HOH C 23 523 48 HOH HOH . J 4 HOH C 24 524 2 HOH HOH . J 4 HOH C 25 525 141 HOH HOH . J 4 HOH C 26 526 140 HOH HOH . J 4 HOH C 27 527 95 HOH HOH . J 4 HOH C 28 528 132 HOH HOH . J 4 HOH C 29 529 139 HOH HOH . J 4 HOH C 30 530 81 HOH HOH . J 4 HOH C 31 531 40 HOH HOH . J 4 HOH C 32 532 8 HOH HOH . J 4 HOH C 33 533 20 HOH HOH . J 4 HOH C 34 534 16 HOH HOH . J 4 HOH C 35 535 142 HOH HOH . J 4 HOH C 36 536 112 HOH HOH . J 4 HOH C 37 537 93 HOH HOH . J 4 HOH C 38 538 11 HOH HOH . J 4 HOH C 39 539 19 HOH HOH . J 4 HOH C 40 540 50 HOH HOH . J 4 HOH C 41 541 131 HOH HOH . J 4 HOH C 42 542 135 HOH HOH . J 4 HOH C 43 543 150 HOH HOH . J 4 HOH C 44 544 71 HOH HOH . J 4 HOH C 45 545 78 HOH HOH . J 4 HOH C 46 546 54 HOH HOH . J 4 HOH C 47 547 58 HOH HOH . J 4 HOH C 48 548 65 HOH HOH . J 4 HOH C 49 549 157 HOH HOH . J 4 HOH C 50 550 18 HOH HOH . J 4 HOH C 51 551 84 HOH HOH . J 4 HOH C 52 552 39 HOH HOH . J 4 HOH C 53 553 46 HOH HOH . J 4 HOH C 54 554 47 HOH HOH . J 4 HOH C 55 555 137 HOH HOH . J 4 HOH C 56 556 22 HOH HOH . J 4 HOH C 57 557 36 HOH HOH . J 4 HOH C 58 558 87 HOH HOH . J 4 HOH C 59 559 99 HOH HOH . J 4 HOH C 60 560 133 HOH HOH . J 4 HOH C 61 561 138 HOH HOH . J 4 HOH C 62 562 21 HOH HOH . J 4 HOH C 63 563 94 HOH HOH . J 4 HOH C 64 564 59 HOH HOH . J 4 HOH C 65 565 69 HOH HOH . J 4 HOH C 66 566 106 HOH HOH . J 4 HOH C 67 567 134 HOH HOH . J 4 HOH C 68 568 73 HOH HOH . J 4 HOH C 69 569 80 HOH HOH . J 4 HOH C 70 570 4 HOH HOH . J 4 HOH C 71 571 68 HOH HOH . J 4 HOH C 72 572 91 HOH HOH . J 4 HOH C 73 573 136 HOH HOH . J 4 HOH C 74 574 144 HOH HOH . J 4 HOH C 75 575 148 HOH HOH . J 4 HOH C 76 576 31 HOH HOH . J 4 HOH C 77 577 146 HOH HOH . J 4 HOH C 78 578 145 HOH HOH . J 4 HOH C 79 579 23 HOH HOH . J 4 HOH C 80 580 158 HOH HOH . J 4 HOH C 81 581 110 HOH HOH . J 4 HOH C 82 582 3 HOH HOH . J 4 HOH C 83 583 88 HOH HOH . J 4 HOH C 84 584 111 HOH HOH . J 4 HOH C 85 585 149 HOH HOH . J 4 HOH C 86 586 147 HOH HOH . J 4 HOH C 87 587 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.197 _atom_site.Cartn_y -4.458 _atom_site.Cartn_z 13.014 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #