data_7ZG9 # _model_server_result.job_id z_2671nnumnzLVSvVXmMjA _model_server_result.datetime_utc '2025-07-07 08:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7ZG9 # _exptl.entry_id 7ZG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Himbacine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZG9 _cell.length_a 86.593 _cell.length_b 86.593 _cell.length_c 148.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H35 N O2' _chem_comp.formula_weight 345.519 _chem_comp.id KO0 _chem_comp.mon_nstd_flag . _chem_comp.name Himbacine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,3aR,4S,4R,8aR,9aS)-4-[(E)-2-[(2R,6S)-1,6-dimethylpiperidin-2-yl]ethenyl]-3-methyl-3a,4,4a,5,6,7,8,8a,9,9a-decahydro-3H-benzo[f][2]benzofuran-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C8 KO0 doub 173 n n O9 C8 KO0 sing 174 n n O9 C7 KO0 sing 175 n n C8 C2 KO0 sing 176 n n C11 C7 KO0 sing 177 n n C7 C1 KO0 sing 178 n n C2 C3 KO0 sing 179 n n C2 C1 KO0 sing 180 n n C3 C4 KO0 sing 181 n n C1 C6 KO0 sing 182 n n C4 C15 KO0 sing 183 n n C4 C5 KO0 sing 184 n n C6 C5 KO0 sing 185 n n C6 C16 KO0 sing 186 n n C15 C14 KO0 sing 187 n n C5 C12 KO0 sing 188 n n C16 C17 KO0 doub 189 e n C19 C20 KO0 sing 190 n n C19 C18 KO0 sing 191 n n C17 C18 KO0 sing 192 n n C20 C21 KO0 sing 193 n n C18 N23 KO0 sing 194 n n C14 C13 KO0 sing 195 n n C12 C13 KO0 sing 196 n n C21 C22 KO0 sing 197 n n N23 C22 KO0 sing 198 n n N23 C25 KO0 sing 199 n n C22 C24 KO0 sing 200 n n C1 H1 KO0 sing 201 n n C2 H2 KO0 sing 202 n n C3 H3 KO0 sing 203 n n C3 H4 KO0 sing 204 n n C4 H5 KO0 sing 205 n n C5 H6 KO0 sing 206 n n C6 H7 KO0 sing 207 n n C7 H8 KO0 sing 208 n n C11 H9 KO0 sing 209 n n C11 H10 KO0 sing 210 n n C11 H11 KO0 sing 211 n n C12 H12 KO0 sing 212 n n C12 H13 KO0 sing 213 n n C13 H14 KO0 sing 214 n n C13 H15 KO0 sing 215 n n C14 H16 KO0 sing 216 n n C14 H17 KO0 sing 217 n n C15 H18 KO0 sing 218 n n C15 H19 KO0 sing 219 n n C16 H20 KO0 sing 220 n n C17 H21 KO0 sing 221 n n C18 H22 KO0 sing 222 n n C19 H23 KO0 sing 223 n n C19 H24 KO0 sing 224 n n C20 H25 KO0 sing 225 n n C20 H26 KO0 sing 226 n n C21 H27 KO0 sing 227 n n C21 H28 KO0 sing 228 n n C22 H29 KO0 sing 229 n n C24 H31 KO0 sing 230 n n C24 H32 KO0 sing 231 n n C24 H33 KO0 sing 232 n n C25 H34 KO0 sing 233 n n C25 H35 KO0 sing 234 n n C25 H36 KO0 sing 235 n n # _atom_sites.entry_id 7ZG9 _atom_sites.fract_transf_matrix[1][1] 0.011548 _atom_sites.fract_transf_matrix[1][2] 0.006667 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KO0 A 1 401 2 KO0 Him . D 2 KO0 B 1 401 1 KO0 Him . E 3 HOH A 1 501 299 HOH HOH . E 3 HOH A 2 502 62 HOH HOH . E 3 HOH A 3 503 83 HOH HOH . E 3 HOH A 4 504 25 HOH HOH . E 3 HOH A 5 505 221 HOH HOH . E 3 HOH A 6 506 32 HOH HOH . E 3 HOH A 7 507 118 HOH HOH . E 3 HOH A 8 508 113 HOH HOH . E 3 HOH A 9 509 352 HOH HOH . E 3 HOH A 10 510 71 HOH HOH . E 3 HOH A 11 511 252 HOH HOH . E 3 HOH A 12 512 33 HOH HOH . E 3 HOH A 13 513 203 HOH HOH . E 3 HOH A 14 514 17 HOH HOH . E 3 HOH A 15 515 76 HOH HOH . E 3 HOH A 16 516 205 HOH HOH . E 3 HOH A 17 517 278 HOH HOH . E 3 HOH A 18 518 128 HOH HOH . E 3 HOH A 19 519 173 HOH HOH . E 3 HOH A 20 520 79 HOH HOH . E 3 HOH A 21 521 29 HOH HOH . E 3 HOH A 22 522 157 HOH HOH . E 3 HOH A 23 523 74 HOH HOH . E 3 HOH A 24 524 105 HOH HOH . E 3 HOH A 25 525 119 HOH HOH . E 3 HOH A 26 526 99 HOH HOH . E 3 HOH A 27 527 144 HOH HOH . E 3 HOH A 28 528 24 HOH HOH . E 3 HOH A 29 529 55 HOH HOH . E 3 HOH A 30 530 57 HOH HOH . E 3 HOH A 31 531 329 HOH HOH . E 3 HOH A 32 532 111 HOH HOH . E 3 HOH A 33 533 215 HOH HOH . E 3 HOH A 34 534 191 HOH HOH . E 3 HOH A 35 535 64 HOH HOH . E 3 HOH A 36 536 143 HOH HOH . E 3 HOH A 37 537 136 HOH HOH . E 3 HOH A 38 538 174 HOH HOH . E 3 HOH A 39 539 23 HOH HOH . E 3 HOH A 40 540 258 HOH HOH . E 3 HOH A 41 541 47 HOH HOH . E 3 HOH A 42 542 275 HOH HOH . E 3 HOH A 43 543 39 HOH HOH . E 3 HOH A 44 544 195 HOH HOH . E 3 HOH A 45 545 130 HOH HOH . E 3 HOH A 46 546 30 HOH HOH . E 3 HOH A 47 547 121 HOH HOH . E 3 HOH A 48 548 80 HOH HOH . E 3 HOH A 49 549 172 HOH HOH . E 3 HOH A 50 550 123 HOH HOH . E 3 HOH A 51 551 189 HOH HOH . E 3 HOH A 52 552 188 HOH HOH . E 3 HOH A 53 553 147 HOH HOH . E 3 HOH A 54 554 223 HOH HOH . E 3 HOH A 55 555 148 HOH HOH . E 3 HOH A 56 556 40 HOH HOH . E 3 HOH A 57 557 140 HOH HOH . E 3 HOH A 58 558 103 HOH HOH . E 3 HOH A 59 559 95 HOH HOH . E 3 HOH A 60 560 37 HOH HOH . E 3 HOH A 61 561 243 HOH HOH . E 3 HOH A 62 562 145 HOH HOH . E 3 HOH A 63 563 251 HOH HOH . E 3 HOH A 64 564 110 HOH HOH . E 3 HOH A 65 565 59 HOH HOH . E 3 HOH A 66 566 60 HOH HOH . E 3 HOH A 67 567 292 HOH HOH . E 3 HOH A 68 568 462 HOH HOH . E 3 HOH A 69 569 449 HOH HOH . E 3 HOH A 70 570 65 HOH HOH . E 3 HOH A 71 571 170 HOH HOH . E 3 HOH A 72 572 106 HOH HOH . E 3 HOH A 73 573 101 HOH HOH . E 3 HOH A 74 574 273 HOH HOH . E 3 HOH A 75 575 468 HOH HOH . E 3 HOH A 76 576 85 HOH HOH . E 3 HOH A 77 577 186 HOH HOH . E 3 HOH A 78 578 51 HOH HOH . E 3 HOH A 79 579 100 HOH HOH . E 3 HOH A 80 580 34 HOH HOH . E 3 HOH A 81 581 49 HOH HOH . E 3 HOH A 82 582 261 HOH HOH . E 3 HOH A 83 583 163 HOH HOH . E 3 HOH A 84 584 88 HOH HOH . E 3 HOH A 85 585 199 HOH HOH . E 3 HOH A 86 586 240 HOH HOH . E 3 HOH A 87 587 177 HOH HOH . E 3 HOH A 88 588 439 HOH HOH . E 3 HOH A 89 589 87 HOH HOH . E 3 HOH A 90 590 441 HOH HOH . E 3 HOH A 91 591 378 HOH HOH . E 3 HOH A 92 592 280 HOH HOH . E 3 HOH A 93 593 475 HOH HOH . E 3 HOH A 94 594 50 HOH HOH . E 3 HOH A 95 595 97 HOH HOH . E 3 HOH A 96 596 141 HOH HOH . F 3 HOH B 1 501 194 HOH HOH . F 3 HOH B 2 502 134 HOH HOH . F 3 HOH B 3 503 262 HOH HOH . F 3 HOH B 4 504 125 HOH HOH . F 3 HOH B 5 505 93 HOH HOH . F 3 HOH B 6 506 190 HOH HOH . F 3 HOH B 7 507 67 HOH HOH . F 3 HOH B 8 508 404 HOH HOH . F 3 HOH B 9 509 156 HOH HOH . F 3 HOH B 10 510 11 HOH HOH . F 3 HOH B 11 511 48 HOH HOH . F 3 HOH B 12 512 42 HOH HOH . F 3 HOH B 13 513 287 HOH HOH . F 3 HOH B 14 514 129 HOH HOH . F 3 HOH B 15 515 142 HOH HOH . F 3 HOH B 16 516 432 HOH HOH . F 3 HOH B 17 517 268 HOH HOH . F 3 HOH B 18 518 116 HOH HOH . F 3 HOH B 19 519 35 HOH HOH . F 3 HOH B 20 520 2 HOH HOH . F 3 HOH B 21 521 22 HOH HOH . F 3 HOH B 22 522 78 HOH HOH . F 3 HOH B 23 523 112 HOH HOH . F 3 HOH B 24 524 1 HOH HOH . F 3 HOH B 25 525 438 HOH HOH . F 3 HOH B 26 526 4 HOH HOH . F 3 HOH B 27 527 183 HOH HOH . F 3 HOH B 28 528 89 HOH HOH . F 3 HOH B 29 529 61 HOH HOH . F 3 HOH B 30 530 21 HOH HOH . F 3 HOH B 31 531 8 HOH HOH . F 3 HOH B 32 532 53 HOH HOH . F 3 HOH B 33 533 43 HOH HOH . F 3 HOH B 34 534 152 HOH HOH . F 3 HOH B 35 535 91 HOH HOH . F 3 HOH B 36 536 166 HOH HOH . F 3 HOH B 37 537 63 HOH HOH . F 3 HOH B 38 538 271 HOH HOH . F 3 HOH B 39 539 198 HOH HOH . F 3 HOH B 40 540 204 HOH HOH . F 3 HOH B 41 541 70 HOH HOH . F 3 HOH B 42 542 219 HOH HOH . F 3 HOH B 43 543 133 HOH HOH . F 3 HOH B 44 544 19 HOH HOH . F 3 HOH B 45 545 3 HOH HOH . F 3 HOH B 46 546 7 HOH HOH . F 3 HOH B 47 547 28 HOH HOH . F 3 HOH B 48 548 102 HOH HOH . F 3 HOH B 49 549 108 HOH HOH . F 3 HOH B 50 550 84 HOH HOH . F 3 HOH B 51 551 41 HOH HOH . F 3 HOH B 52 552 154 HOH HOH . F 3 HOH B 53 553 92 HOH HOH . F 3 HOH B 54 554 73 HOH HOH . F 3 HOH B 55 555 72 HOH HOH . F 3 HOH B 56 556 10 HOH HOH . F 3 HOH B 57 557 98 HOH HOH . F 3 HOH B 58 558 58 HOH HOH . F 3 HOH B 59 559 363 HOH HOH . F 3 HOH B 60 560 120 HOH HOH . F 3 HOH B 61 561 229 HOH HOH . F 3 HOH B 62 562 182 HOH HOH . F 3 HOH B 63 563 114 HOH HOH . F 3 HOH B 64 564 115 HOH HOH . F 3 HOH B 65 565 66 HOH HOH . F 3 HOH B 66 566 31 HOH HOH . F 3 HOH B 67 567 90 HOH HOH . F 3 HOH B 68 568 81 HOH HOH . F 3 HOH B 69 569 5 HOH HOH . F 3 HOH B 70 570 178 HOH HOH . F 3 HOH B 71 571 77 HOH HOH . F 3 HOH B 72 572 36 HOH HOH . F 3 HOH B 73 573 184 HOH HOH . F 3 HOH B 74 574 82 HOH HOH . F 3 HOH B 75 575 16 HOH HOH . F 3 HOH B 76 576 327 HOH HOH . F 3 HOH B 77 577 155 HOH HOH . F 3 HOH B 78 578 15 HOH HOH . F 3 HOH B 79 579 69 HOH HOH . F 3 HOH B 80 580 56 HOH HOH . F 3 HOH B 81 581 217 HOH HOH . F 3 HOH B 82 582 137 HOH HOH . F 3 HOH B 83 583 180 HOH HOH . F 3 HOH B 84 584 139 HOH HOH . F 3 HOH B 85 585 181 HOH HOH . F 3 HOH B 86 586 153 HOH HOH . F 3 HOH B 87 587 304 HOH HOH . F 3 HOH B 88 588 150 HOH HOH . F 3 HOH B 89 589 237 HOH HOH . F 3 HOH B 90 590 276 HOH HOH . F 3 HOH B 91 591 45 HOH HOH . F 3 HOH B 92 592 192 HOH HOH . F 3 HOH B 93 593 212 HOH HOH . F 3 HOH B 94 594 13 HOH HOH . F 3 HOH B 95 595 169 HOH HOH . F 3 HOH B 96 596 324 HOH HOH . F 3 HOH B 97 597 200 HOH HOH . F 3 HOH B 98 598 437 HOH HOH . F 3 HOH B 99 599 159 HOH HOH . F 3 HOH B 100 600 68 HOH HOH . F 3 HOH B 101 601 138 HOH HOH . F 3 HOH B 102 602 171 HOH HOH . F 3 HOH B 103 603 235 HOH HOH . F 3 HOH B 104 604 202 HOH HOH . F 3 HOH B 105 605 354 HOH HOH . F 3 HOH B 106 606 246 HOH HOH . F 3 HOH B 107 607 193 HOH HOH . F 3 HOH B 108 608 12 HOH HOH . F 3 HOH B 109 609 266 HOH HOH . F 3 HOH B 110 610 160 HOH HOH . F 3 HOH B 111 611 471 HOH HOH . F 3 HOH B 112 612 109 HOH HOH . F 3 HOH B 113 613 131 HOH HOH . F 3 HOH B 114 614 289 HOH HOH . F 3 HOH B 115 615 224 HOH HOH . F 3 HOH B 116 616 228 HOH HOH . F 3 HOH B 117 617 294 HOH HOH . F 3 HOH B 118 618 46 HOH HOH . F 3 HOH B 119 619 149 HOH HOH . F 3 HOH B 120 620 218 HOH HOH . F 3 HOH B 121 621 211 HOH HOH . F 3 HOH B 122 622 256 HOH HOH . F 3 HOH B 123 623 18 HOH HOH . F 3 HOH B 124 624 162 HOH HOH . F 3 HOH B 125 625 390 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KO0 . . . D 2 -31.957 47.033 25.207 1 25.08 ? C1 KO0 401 B 1 HETATM 2 C C2 KO0 . . . D 2 -31.878 48.395 24.545 1 24.77 ? C2 KO0 401 B 1 HETATM 3 C C3 KO0 . . . D 2 -32.983 49.268 25.094 1 25.08 ? C3 KO0 401 B 1 HETATM 4 C C4 KO0 . . . D 2 -32.742 49.568 26.579 1 28.32 ? C4 KO0 401 B 1 HETATM 5 C C5 KO0 . . . D 2 -32.346 48.342 27.442 1 40.86 ? C5 KO0 401 B 1 HETATM 6 C C6 KO0 . . . D 2 -32.46 47.028 26.671 1 31.48 ? C6 KO0 401 B 1 HETATM 7 C C7 KO0 . . . D 2 -33.099 46.385 24.423 1 25.9 ? C7 KO0 401 B 1 HETATM 8 C C8 KO0 . . . D 2 -32.273 48.095 23.153 1 28.8 ? C8 KO0 401 B 1 HETATM 9 O O9 KO0 . . . D 2 -33.093 46.924 23.09 1 29 ? O9 KO0 401 B 1 HETATM 10 O O10 KO0 . . . D 2 -31.992 48.736 22.156 1 33.75 ? O10 KO0 401 B 1 HETATM 11 C C11 KO0 . . . D 2 -33.02 44.864 24.33 1 30.67 ? C11 KO0 401 B 1 HETATM 12 C C12 KO0 . . . D 2 -33.008 48.206 28.822 1 32.76 ? C12 KO0 401 B 1 HETATM 13 C C13 KO0 . . . D 2 -33.942 49.318 29.301 1 26.35 ? C13 KO0 401 B 1 HETATM 14 C C14 KO0 . . . D 2 -33.728 50.657 28.6 1 27.48 ? C14 KO0 401 B 1 HETATM 15 C C15 KO0 . . . D 2 -33.882 50.449 27.098 1 28.18 ? C15 KO0 401 B 1 HETATM 16 C C16 KO0 . . . D 2 -32.217 45.718 27.458 1 28.9 ? C16 KO0 401 B 1 HETATM 17 C C17 KO0 . . . D 2 -31.081 45.092 27.842 1 27.05 ? C17 KO0 401 B 1 HETATM 18 C C18 KO0 . . . D 2 -31.243 43.748 28.577 1 29.47 ? C18 KO0 401 B 1 HETATM 19 C C19 KO0 . . . D 2 -30.652 42.661 27.685 1 33.62 ? C19 KO0 401 B 1 HETATM 20 C C20 KO0 . . . D 2 -30.603 41.281 28.353 1 31.05 ? C20 KO0 401 B 1 HETATM 21 C C21 KO0 . . . D 2 -29.945 41.339 29.727 1 32.84 ? C21 KO0 401 B 1 HETATM 22 C C22 KO0 . . . D 2 -30.625 42.409 30.579 1 35.21 ? C22 KO0 401 B 1 HETATM 23 N N23 KO0 . . . D 2 -30.6 43.736 29.904 1 29.37 ? N23 KO0 401 B 1 HETATM 24 C C24 KO0 . . . D 2 -32.054 41.981 30.907 1 35.67 ? C24 KO0 401 B 1 HETATM 25 C C25 KO0 . . . D 2 -31.288 44.717 30.763 1 31.81 ? C25 KO0 401 B 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #