data_7ZGD # _model_server_result.job_id bJZg7hW50T1wMSXi8h7roQ _model_server_result.datetime_utc '2025-07-07 23:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7ZGD # _exptl.entry_id 7ZGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.222 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-bromanyl-3-nitro-phenyl)-[4-(2-fluorophenyl)piperazin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZGD _cell.length_a 86.728 _cell.length_b 86.728 _cell.length_c 109.61 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H15 Br F N3 O3' _chem_comp.formula_weight 408.222 _chem_comp.id IUC _chem_comp.mon_nstd_flag . _chem_comp.name (4-bromanyl-3-nitro-phenyl)-[4-(2-fluorophenyl)piperazin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C16 IUC sing 173 n n C14 N13 IUC sing 174 n n C16 N18 IUC sing 175 n n C21 C20 IUC doub 176 n y C21 C22 IUC sing 177 n y C20 C19 IUC sing 178 n y C22 C23 IUC doub 179 n y C19 N18 IUC sing 180 n n C19 C24 IUC doub 181 n y N18 C17 IUC sing 182 n n C23 C24 IUC sing 183 n y C24 F25 IUC sing 184 n n N13 C15 IUC sing 185 n n N13 C11 IUC sing 186 n n O12 C11 IUC doub 187 n n C15 C17 IUC sing 188 n n C11 C3 IUC sing 189 n n C3 C4 IUC doub 190 n y C3 C2 IUC sing 191 n y C4 C5 IUC sing 192 n y C2 C1 IUC doub 193 n y O10 N8 IUC doub 194 n n C5 N8 IUC sing 195 n n C5 C6 IUC doub 196 n y N8 O9 IUC sing 197 n n C1 C6 IUC sing 198 n y C6 BR7 IUC sing 199 n n C2 H1 IUC sing 200 n n C4 H2 IUC sing 201 n n C1 H3 IUC sing 202 n n C14 H4 IUC sing 203 n n C14 H5 IUC sing 204 n n C15 H6 IUC sing 205 n n C15 H7 IUC sing 206 n n C16 H8 IUC sing 207 n n C16 H9 IUC sing 208 n n C17 H10 IUC sing 209 n n C17 H11 IUC sing 210 n n C20 H12 IUC sing 211 n n C21 H13 IUC sing 212 n n C22 H14 IUC sing 213 n n C23 H15 IUC sing 214 n n # _atom_sites.entry_id 7ZGD _atom_sites.fract_transf_matrix[1][1] 0.01153 _atom_sites.fract_transf_matrix[1][2] 0.006657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IUC A 1 401 1 IUC SMI . C 3 HOH A 1 501 23 HOH HOH . C 3 HOH A 2 502 4 HOH HOH . C 3 HOH A 3 503 7 HOH HOH . C 3 HOH A 4 504 1 HOH HOH . C 3 HOH A 5 505 3 HOH HOH . C 3 HOH A 6 506 19 HOH HOH . C 3 HOH A 7 507 18 HOH HOH . C 3 HOH A 8 508 2 HOH HOH . C 3 HOH A 9 509 11 HOH HOH . C 3 HOH A 10 510 17 HOH HOH . C 3 HOH A 11 511 20 HOH HOH . C 3 HOH A 12 512 22 HOH HOH . C 3 HOH A 13 513 12 HOH HOH . C 3 HOH A 14 514 9 HOH HOH . C 3 HOH A 15 515 8 HOH HOH . C 3 HOH A 16 516 15 HOH HOH . C 3 HOH A 17 517 6 HOH HOH . C 3 HOH A 18 518 13 HOH HOH . C 3 HOH A 19 519 14 HOH HOH . C 3 HOH A 20 520 5 HOH HOH . C 3 HOH A 21 521 16 HOH HOH . C 3 HOH A 22 522 10 HOH HOH . C 3 HOH A 23 523 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IUC . . . B 2 -21.77 26.811 1.737 1 43.01 ? C2 IUC 401 A 1 HETATM 2 C C3 IUC . . . B 2 -22.672 26.672 0.676 1 46.63 ? C3 IUC 401 A 1 HETATM 3 C C4 IUC . . . B 2 -23.833 25.938 0.839 1 44.95 ? C4 IUC 401 A 1 HETATM 4 C C5 IUC . . . B 2 -24.108 25.345 2.064 1 50.53 ? C5 IUC 401 A 1 HETATM 5 C C6 IUC . . . B 2 -23.241 25.479 3.135 1 47.71 ? C6 IUC 401 A 1 HETATM 6 N N8 IUC . . . B 2 -25.301 24.636 2.191 1 63.46 ? N8 IUC 401 A 1 HETATM 7 O O9 IUC . . . B 2 -26.316 25.269 2.461 1 65.62 ? O9 IUC 401 A 1 HETATM 8 C C11 IUC . . . B 2 -22.339 27.272 -0.644 1 50.54 ? C11 IUC 401 A 1 HETATM 9 C C1 IUC . . . B 2 -22.067 26.217 2.968 1 46.8 ? C1 IUC 401 A 1 HETATM 10 BR BR7 IUC . . . B 2 -23.648 24.661 4.808 1 52.18 ? BR7 IUC 401 A 1 HETATM 11 O O10 IUC . . . B 2 -25.318 23.242 1.979 1 62.67 ? O10 IUC 401 A 1 HETATM 12 O O12 IUC . . . B 2 -21.244 26.953 -1.092 1 46.7 ? O12 IUC 401 A 1 HETATM 13 N N13 IUC . . . B 2 -23.164 28.085 -1.31 1 49.61 ? N13 IUC 401 A 1 HETATM 14 C C14 IUC . . . B 2 -22.888 28.47 -2.689 1 51 ? C14 IUC 401 A 1 HETATM 15 C C15 IUC . . . B 2 -24.382 28.67 -0.794 1 42.03 ? C15 IUC 401 A 1 HETATM 16 C C16 IUC . . . B 2 -22.492 29.952 -2.661 1 42.54 ? C16 IUC 401 A 1 HETATM 17 C C17 IUC . . . B 2 -24.08 30.152 -0.617 1 43.5 ? C17 IUC 401 A 1 HETATM 18 N N18 IUC . . . B 2 -23.357 30.728 -1.756 1 44.32 ? N18 IUC 401 A 1 HETATM 19 C C19 IUC . . . B 2 -23.391 32.14 -1.828 1 45.11 ? C19 IUC 401 A 1 HETATM 20 C C20 IUC . . . B 2 -22.159 32.783 -1.93 1 45.53 ? C20 IUC 401 A 1 HETATM 21 C C21 IUC . . . B 2 -22.084 34.171 -1.941 1 43.06 ? C21 IUC 401 A 1 HETATM 22 C C22 IUC . . . B 2 -23.246 34.929 -1.856 1 45.02 ? C22 IUC 401 A 1 HETATM 23 C C23 IUC . . . B 2 -24.482 34.31 -1.744 1 41.07 ? C23 IUC 401 A 1 HETATM 24 C C24 IUC . . . B 2 -24.554 32.926 -1.724 1 44.9 ? C24 IUC 401 A 1 HETATM 25 F F25 IUC . . . B 2 -25.785 32.415 -1.625 1 47.73 ? F25 IUC 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #