data_7ZGZ # _model_server_result.job_id oBfyfl6Rjnd6XwMMKwZqrQ _model_server_result.datetime_utc '2025-01-11 04:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7ZGZ # _exptl.entry_id 7ZGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-xylopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZGZ _cell.length_a 178.58 _cell.length_b 97.21 _cell.length_c 99.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id XYP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-xylopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-xylose;D-xylose;xylose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 XYP sing 397 n n O1 HO1 XYP sing 398 n n C1 C2 XYP sing 399 n n C1 O5 XYP sing 400 n n C1 H1 XYP sing 401 n n C2 C3 XYP sing 402 n n C2 O2 XYP sing 403 n n C2 H2 XYP sing 404 n n C3 C4 XYP sing 405 n n C3 O3 XYP sing 406 n n C3 H3 XYP sing 407 n n C4 C5 XYP sing 408 n n C4 O4 XYP sing 409 n n C4 H4 XYP sing 410 n n C5 O5 XYP sing 411 n n C5 H51 XYP sing 412 n n C5 H52 XYP sing 413 n n O2 HO2 XYP sing 414 n n O3 HO3 XYP sing 415 n n O4 HO4 XYP sing 416 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version XYP DXylpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 XYP b-D-xylopyranose 'COMMON NAME' GMML 1 XYP b-D-Xylp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 XYP Xyl 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7ZGZ _atom_sites.fract_transf_matrix[1][1] 0.0056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XYP X 1 901 783 XYP XYB . D 3 MPD X 1 902 786 MPD MPD . E 2 XYP Y 1 901 785 XYP XYB . F 3 MPD Y 1 902 801 MPD MPD . G 4 HOH X 1 1001 246 HOH HOH . G 4 HOH X 2 1002 233 HOH HOH . G 4 HOH X 3 1003 165 HOH HOH . G 4 HOH X 4 1004 100 HOH HOH . G 4 HOH X 5 1005 240 HOH HOH . G 4 HOH X 6 1006 180 HOH HOH . G 4 HOH X 7 1007 149 HOH HOH . G 4 HOH X 8 1008 9 HOH HOH . G 4 HOH X 9 1009 123 HOH HOH . G 4 HOH X 10 1010 229 HOH HOH . G 4 HOH X 11 1011 157 HOH HOH . G 4 HOH X 12 1012 83 HOH HOH . G 4 HOH X 13 1013 139 HOH HOH . G 4 HOH X 14 1014 211 HOH HOH . G 4 HOH X 15 1015 209 HOH HOH . G 4 HOH X 16 1016 194 HOH HOH . G 4 HOH X 17 1017 72 HOH HOH . G 4 HOH X 18 1018 237 HOH HOH . G 4 HOH X 19 1019 220 HOH HOH . G 4 HOH X 20 1020 203 HOH HOH . G 4 HOH X 21 1021 51 HOH HOH . G 4 HOH X 22 1022 118 HOH HOH . G 4 HOH X 23 1023 13 HOH HOH . G 4 HOH X 24 1024 58 HOH HOH . G 4 HOH X 25 1025 46 HOH HOH . G 4 HOH X 26 1026 16 HOH HOH . G 4 HOH X 27 1027 133 HOH HOH . G 4 HOH X 28 1028 163 HOH HOH . G 4 HOH X 29 1029 101 HOH HOH . G 4 HOH X 30 1030 78 HOH HOH . G 4 HOH X 31 1031 143 HOH HOH . G 4 HOH X 32 1032 172 HOH HOH . G 4 HOH X 33 1033 86 HOH HOH . G 4 HOH X 34 1034 91 HOH HOH . G 4 HOH X 35 1035 179 HOH HOH . G 4 HOH X 36 1036 228 HOH HOH . G 4 HOH X 37 1037 155 HOH HOH . G 4 HOH X 38 1038 39 HOH HOH . G 4 HOH X 39 1039 230 HOH HOH . G 4 HOH X 40 1040 42 HOH HOH . G 4 HOH X 41 1041 216 HOH HOH . G 4 HOH X 42 1042 107 HOH HOH . G 4 HOH X 43 1043 197 HOH HOH . G 4 HOH X 44 1044 63 HOH HOH . G 4 HOH X 45 1045 68 HOH HOH . G 4 HOH X 46 1046 43 HOH HOH . G 4 HOH X 47 1047 80 HOH HOH . G 4 HOH X 48 1048 108 HOH HOH . G 4 HOH X 49 1049 120 HOH HOH . G 4 HOH X 50 1050 224 HOH HOH . G 4 HOH X 51 1051 140 HOH HOH . G 4 HOH X 52 1052 95 HOH HOH . G 4 HOH X 53 1053 200 HOH HOH . G 4 HOH X 54 1054 55 HOH HOH . G 4 HOH X 55 1055 117 HOH HOH . G 4 HOH X 56 1056 37 HOH HOH . G 4 HOH X 57 1057 21 HOH HOH . G 4 HOH X 58 1058 114 HOH HOH . G 4 HOH X 59 1059 206 HOH HOH . G 4 HOH X 60 1060 241 HOH HOH . G 4 HOH X 61 1061 92 HOH HOH . G 4 HOH X 62 1062 40 HOH HOH . G 4 HOH X 63 1063 26 HOH HOH . G 4 HOH X 64 1064 94 HOH HOH . G 4 HOH X 65 1065 38 HOH HOH . G 4 HOH X 66 1066 34 HOH HOH . G 4 HOH X 67 1067 151 HOH HOH . G 4 HOH X 68 1068 36 HOH HOH . G 4 HOH X 69 1069 104 HOH HOH . G 4 HOH X 70 1070 124 HOH HOH . G 4 HOH X 71 1071 64 HOH HOH . G 4 HOH X 72 1072 173 HOH HOH . G 4 HOH X 73 1073 215 HOH HOH . G 4 HOH X 74 1074 202 HOH HOH . G 4 HOH X 75 1075 79 HOH HOH . G 4 HOH X 76 1076 110 HOH HOH . G 4 HOH X 77 1077 48 HOH HOH . G 4 HOH X 78 1078 208 HOH HOH . G 4 HOH X 79 1079 53 HOH HOH . G 4 HOH X 80 1080 146 HOH HOH . G 4 HOH X 81 1081 227 HOH HOH . G 4 HOH X 82 1082 8 HOH HOH . G 4 HOH X 83 1083 198 HOH HOH . G 4 HOH X 84 1084 160 HOH HOH . G 4 HOH X 85 1085 112 HOH HOH . G 4 HOH X 86 1086 222 HOH HOH . G 4 HOH X 87 1087 210 HOH HOH . G 4 HOH X 88 1088 223 HOH HOH . G 4 HOH X 89 1089 184 HOH HOH . G 4 HOH X 90 1090 154 HOH HOH . H 4 HOH Y 1 1001 126 HOH HOH . H 4 HOH Y 2 1002 5 HOH HOH . H 4 HOH Y 3 1003 239 HOH HOH . H 4 HOH Y 4 1004 147 HOH HOH . H 4 HOH Y 5 1005 18 HOH HOH . H 4 HOH Y 6 1006 23 HOH HOH . H 4 HOH Y 7 1007 232 HOH HOH . H 4 HOH Y 8 1008 213 HOH HOH . H 4 HOH Y 9 1009 87 HOH HOH . H 4 HOH Y 10 1010 30 HOH HOH . H 4 HOH Y 11 1011 77 HOH HOH . H 4 HOH Y 12 1012 161 HOH HOH . H 4 HOH Y 13 1013 25 HOH HOH . H 4 HOH Y 14 1014 75 HOH HOH . H 4 HOH Y 15 1015 243 HOH HOH . H 4 HOH Y 16 1016 102 HOH HOH . H 4 HOH Y 17 1017 44 HOH HOH . H 4 HOH Y 18 1018 122 HOH HOH . H 4 HOH Y 19 1019 19 HOH HOH . H 4 HOH Y 20 1020 22 HOH HOH . H 4 HOH Y 21 1021 31 HOH HOH . H 4 HOH Y 22 1022 50 HOH HOH . H 4 HOH Y 23 1023 191 HOH HOH . H 4 HOH Y 24 1024 150 HOH HOH . H 4 HOH Y 25 1025 109 HOH HOH . H 4 HOH Y 26 1026 61 HOH HOH . H 4 HOH Y 27 1027 62 HOH HOH . H 4 HOH Y 28 1028 156 HOH HOH . H 4 HOH Y 29 1029 199 HOH HOH . H 4 HOH Y 30 1030 6 HOH HOH . H 4 HOH Y 31 1031 219 HOH HOH . H 4 HOH Y 32 1032 195 HOH HOH . H 4 HOH Y 33 1033 204 HOH HOH . H 4 HOH Y 34 1034 225 HOH HOH . H 4 HOH Y 35 1035 12 HOH HOH . H 4 HOH Y 36 1036 115 HOH HOH . H 4 HOH Y 37 1037 214 HOH HOH . H 4 HOH Y 38 1038 221 HOH HOH . H 4 HOH Y 39 1039 71 HOH HOH . H 4 HOH Y 40 1040 54 HOH HOH . H 4 HOH Y 41 1041 29 HOH HOH . H 4 HOH Y 42 1042 121 HOH HOH . H 4 HOH Y 43 1043 99 HOH HOH . H 4 HOH Y 44 1044 238 HOH HOH . H 4 HOH Y 45 1045 70 HOH HOH . H 4 HOH Y 46 1046 129 HOH HOH . H 4 HOH Y 47 1047 148 HOH HOH . H 4 HOH Y 48 1048 52 HOH HOH . H 4 HOH Y 49 1049 7 HOH HOH . H 4 HOH Y 50 1050 137 HOH HOH . H 4 HOH Y 51 1051 176 HOH HOH . H 4 HOH Y 52 1052 96 HOH HOH . H 4 HOH Y 53 1053 11 HOH HOH . H 4 HOH Y 54 1054 152 HOH HOH . H 4 HOH Y 55 1055 141 HOH HOH . H 4 HOH Y 56 1056 245 HOH HOH . H 4 HOH Y 57 1057 24 HOH HOH . H 4 HOH Y 58 1058 73 HOH HOH . H 4 HOH Y 59 1059 130 HOH HOH . H 4 HOH Y 60 1060 74 HOH HOH . H 4 HOH Y 61 1061 234 HOH HOH . H 4 HOH Y 62 1062 98 HOH HOH . H 4 HOH Y 63 1063 164 HOH HOH . H 4 HOH Y 64 1064 67 HOH HOH . H 4 HOH Y 65 1065 127 HOH HOH . H 4 HOH Y 66 1066 81 HOH HOH . H 4 HOH Y 67 1067 236 HOH HOH . H 4 HOH Y 68 1068 57 HOH HOH . H 4 HOH Y 69 1069 158 HOH HOH . H 4 HOH Y 70 1070 162 HOH HOH . H 4 HOH Y 71 1071 169 HOH HOH . H 4 HOH Y 72 1072 45 HOH HOH . H 4 HOH Y 73 1073 35 HOH HOH . H 4 HOH Y 74 1074 218 HOH HOH . H 4 HOH Y 75 1075 10 HOH HOH . H 4 HOH Y 76 1076 242 HOH HOH . H 4 HOH Y 77 1077 128 HOH HOH . H 4 HOH Y 78 1078 168 HOH HOH . H 4 HOH Y 79 1079 84 HOH HOH . H 4 HOH Y 80 1080 144 HOH HOH . H 4 HOH Y 81 1081 125 HOH HOH . H 4 HOH Y 82 1082 97 HOH HOH . H 4 HOH Y 83 1083 65 HOH HOH . H 4 HOH Y 84 1084 4 HOH HOH . H 4 HOH Y 85 1085 28 HOH HOH . H 4 HOH Y 86 1086 59 HOH HOH . H 4 HOH Y 87 1087 60 HOH HOH . H 4 HOH Y 88 1088 135 HOH HOH . H 4 HOH Y 89 1089 153 HOH HOH . H 4 HOH Y 90 1090 142 HOH HOH . H 4 HOH Y 91 1091 175 HOH HOH . H 4 HOH Y 92 1092 93 HOH HOH . H 4 HOH Y 93 1093 192 HOH HOH . H 4 HOH Y 94 1094 76 HOH HOH . H 4 HOH Y 95 1095 226 HOH HOH . H 4 HOH Y 96 1096 138 HOH HOH . H 4 HOH Y 97 1097 14 HOH HOH . H 4 HOH Y 98 1098 178 HOH HOH . H 4 HOH Y 99 1099 217 HOH HOH . H 4 HOH Y 100 1100 90 HOH HOH . H 4 HOH Y 101 1101 105 HOH HOH . H 4 HOH Y 102 1102 47 HOH HOH . H 4 HOH Y 103 1103 134 HOH HOH . H 4 HOH Y 104 1104 88 HOH HOH . H 4 HOH Y 105 1105 182 HOH HOH . H 4 HOH Y 106 1106 15 HOH HOH . H 4 HOH Y 107 1107 113 HOH HOH . H 4 HOH Y 108 1108 136 HOH HOH . H 4 HOH Y 109 1109 41 HOH HOH . H 4 HOH Y 110 1110 207 HOH HOH . H 4 HOH Y 111 1111 82 HOH HOH . H 4 HOH Y 112 1112 17 HOH HOH . H 4 HOH Y 113 1113 235 HOH HOH . H 4 HOH Y 114 1114 131 HOH HOH . H 4 HOH Y 115 1115 132 HOH HOH . H 4 HOH Y 116 1116 231 HOH HOH . H 4 HOH Y 117 1117 49 HOH HOH . H 4 HOH Y 118 1118 20 HOH HOH . H 4 HOH Y 119 1119 196 HOH HOH . H 4 HOH Y 120 1120 145 HOH HOH . H 4 HOH Y 121 1121 119 HOH HOH . H 4 HOH Y 122 1122 212 HOH HOH . H 4 HOH Y 123 1123 171 HOH HOH . H 4 HOH Y 124 1124 201 HOH HOH . H 4 HOH Y 125 1125 69 HOH HOH . H 4 HOH Y 126 1126 188 HOH HOH . H 4 HOH Y 127 1127 103 HOH HOH . H 4 HOH Y 128 1128 167 HOH HOH . H 4 HOH Y 129 1129 185 HOH HOH . H 4 HOH Y 130 1130 183 HOH HOH . H 4 HOH Y 131 1131 32 HOH HOH . H 4 HOH Y 132 1132 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XYP . . . C 2 150.632 39.537 56.226 1 64.55 0 O1 XYP 901 X 1 HETATM 2 C C1 XYP . . . C 2 151.788 40.163 56.731 1 60.85 0 C1 XYP 901 X 1 HETATM 3 C C2 XYP . . . C 2 151.878 41.718 56.491 1 65.46 0 C2 XYP 901 X 1 HETATM 4 C C3 XYP . . . C 2 152.859 42.42 57.419 1 60.54 0 C3 XYP 901 X 1 HETATM 5 C C4 XYP . . . C 2 152.661 41.961 58.853 1 63.86 0 C4 XYP 901 X 1 HETATM 6 C C5 XYP . . . C 2 152.742 40.449 58.914 1 61.56 0 C5 XYP 901 X 1 HETATM 7 O O2 XYP . . . C 2 152.265 42.092 55.162 1 56.42 0 O2 XYP 901 X 1 HETATM 8 O O3 XYP . . . C 2 152.648 43.825 57.335 1 61.86 0 O3 XYP 901 X 1 HETATM 9 O O4 XYP . . . C 2 153.666 42.542 59.685 1 58 0 O4 XYP 901 X 1 HETATM 10 O O5 XYP . . . C 2 151.694 39.856 58.132 1 59.92 0 O5 XYP 901 X 1 HETATM 11 H H1 XYP . . . C 2 152.582 39.718 56.351 1 62.09 0 H1 XYP 901 X 1 HETATM 12 H H2 XYP . . . C 2 150.978 42.082 56.663 1 61.78 0 H2 XYP 901 X 1 HETATM 13 H H3 XYP . . . C 2 153.782 42.213 57.136 1 62.28 0 H3 XYP 901 X 1 HETATM 14 H H4 XYP . . . C 2 151.765 42.253 59.169 1 61.61 0 H4 XYP 901 X 1 HETATM 15 H H51 XYP . . . C 2 153.608 40.158 58.571 1 61.7 0 H51 XYP 901 X 1 HETATM 16 H H52 XYP . . . C 2 152.659 40.158 59.842 1 61.7 0 H52 XYP 901 X 1 HETATM 17 H HO3 XYP . . . C 2 152.952 44.092 56.605 1 61.25 0 HO3 XYP 901 X 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #