data_7ZH4
#
_model_server_result.job_id            zRZRRcbeHeKUSRDIp_IWmA 
_model_server_result.datetime_utc      '2025-07-07 21:52:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    7ZH4 
#
_exptl.entry_id    7ZH4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              384.477 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methyl-2-(2-propan-2-ylphenyl)-~{N}-[[4-(1,2,3-triazol-1-yl)phenyl]methyl]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZH4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 441 D CYS 440 1_555 C ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 B SG CYS 444 D CYS 443 1_555 C ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc3 B SG CYS 507 D CYS 506 1_555 C ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 B SG CYS 510 D CYS 509 1_555 C ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
#
_chem_comp.formula           'C23 H24 N6' 
_chem_comp.formula_weight    384.477 
_chem_comp.id                JDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methyl-2-(2-propan-2-ylphenyl)-~{N}-[[4-(1,2,3-triazol-1-yl)phenyl]methyl]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C13 JDA sing 173 n y 
N4 N5 JDA doub 174 n y 
C13 C12 JDA doub 175 n y 
N5 N3 JDA sing 176 n y 
C12 N3 JDA sing 177 n y 
N3 C9 JDA sing 178 n n 
C9 C8 JDA doub 179 n y 
C9 C10 JDA sing 180 n y 
C8 C7 JDA sing 181 n y 
C10 C11 JDA doub 182 n y 
C7 C6 JDA doub 183 n y 
C16 C17 JDA doub 184 n y 
C16 C15 JDA sing 185 n y 
C17 C18 JDA sing 186 n y 
C11 C6 JDA sing 187 n y 
C6 C5 JDA sing 188 n n 
C15 C14 JDA doub 189 n y 
C5 N2 JDA sing 190 n n 
C18 C19 JDA doub 191 n y 
C14 C19 JDA sing 192 n y 
C14 C3 JDA sing 193 n n 
N1 C3 JDA doub 194 n y 
N1 C4 JDA sing 195 n y 
C19 C20 JDA sing 196 n n 
N2 C4 JDA sing 197 n n 
C3 N JDA sing 198 n y 
C4 C1 JDA doub 199 n y 
C20 C21 JDA sing 200 n n 
C20 C22 JDA sing 201 n n 
N C2 JDA doub 202 n y 
C1 C2 JDA sing 203 n y 
C1 C JDA sing 204 n n 
C H1 JDA sing 205 n n 
C H2 JDA sing 206 n n 
C H3 JDA sing 207 n n 
C10 H4 JDA sing 208 n n 
C11 H5 JDA sing 209 n n 
C12 H6 JDA sing 210 n n 
C13 H7 JDA sing 211 n n 
C15 H8 JDA sing 212 n n 
C16 H9 JDA sing 213 n n 
C17 H10 JDA sing 214 n n 
C18 H11 JDA sing 215 n n 
C2 H12 JDA sing 216 n n 
C20 H13 JDA sing 217 n n 
C21 H14 JDA sing 218 n n 
C21 H15 JDA sing 219 n n 
C21 H16 JDA sing 220 n n 
C22 H17 JDA sing 221 n n 
C22 H18 JDA sing 222 n n 
C22 H19 JDA sing 223 n n 
C5 H20 JDA sing 224 n n 
C5 H21 JDA sing 225 n n 
C7 H22 JDA sing 226 n n 
C8 H23 JDA sing 227 n n 
N2 H24 JDA sing 228 n n 
#
_atom_sites.entry_id                     7ZH4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN D 1 1000 1000 ZN ZN . 
D 4 JDA D 1 1001 1001 JDA ML3 . 
E 5 HOH C 1 101 53 HOH HOH . 
E 5 HOH C 2 102 12 HOH HOH . 
E 5 HOH C 3 103 10 HOH HOH . 
E 5 HOH C 4 104 11 HOH HOH . 
E 5 HOH C 5 105 2 HOH HOH . 
E 5 HOH C 6 106 20 HOH HOH . 
E 5 HOH C 7 107 45 HOH HOH . 
E 5 HOH C 8 108 44 HOH HOH . 
E 5 HOH C 9 109 54 HOH HOH . 
E 5 HOH C 10 110 28 HOH HOH . 
E 5 HOH C 11 111 47 HOH HOH . 
F 5 HOH D 1 1101 40 HOH HOH . 
F 5 HOH D 2 1102 21 HOH HOH . 
F 5 HOH D 3 1103 16 HOH HOH . 
F 5 HOH D 4 1104 19 HOH HOH . 
F 5 HOH D 5 1105 49 HOH HOH . 
F 5 HOH D 6 1106 23 HOH HOH . 
F 5 HOH D 7 1107 42 HOH HOH . 
F 5 HOH D 8 1108 22 HOH HOH . 
F 5 HOH D 9 1109 8 HOH HOH . 
F 5 HOH D 10 1110 1 HOH HOH . 
F 5 HOH D 11 1111 43 HOH HOH . 
F 5 HOH D 12 1112 5 HOH HOH . 
F 5 HOH D 13 1113 24 HOH HOH . 
F 5 HOH D 14 1114 59 HOH HOH . 
F 5 HOH D 15 1115 18 HOH HOH . 
F 5 HOH D 16 1116 41 HOH HOH . 
F 5 HOH D 17 1117 25 HOH HOH . 
F 5 HOH D 18 1118 39 HOH HOH . 
F 5 HOH D 19 1119 3 HOH HOH . 
F 5 HOH D 20 1120 15 HOH HOH . 
F 5 HOH D 21 1121 56 HOH HOH . 
F 5 HOH D 22 1122 60 HOH HOH . 
F 5 HOH D 23 1123 34 HOH HOH . 
F 5 HOH D 24 1124 46 HOH HOH . 
F 5 HOH D 25 1125 58 HOH HOH . 
F 5 HOH D 26 1126 33 HOH HOH . 
F 5 HOH D 27 1127 26 HOH HOH . 
F 5 HOH D 28 1128 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N JDA . . . D 4 164.273 122.809 129.918 1 13.43 ? N JDA 1001 D 1 
HETATM 2 C C JDA . . . D 4 161.853 120.231 131.239 1 13.43 ? C JDA 1001 D 1 
HETATM 3 C C1 JDA . . . D 4 162.829 120.936 130.335 1 13.43 ? C1 JDA 1001 D 1 
HETATM 4 C C10 JDA . . . D 4 160.053 118.695 125.23 1 13.43 ? C10 JDA 1001 D 1 
HETATM 5 C C11 JDA . . . D 4 160.93 118.417 126.262 1 13.43 ? C11 JDA 1001 D 1 
HETATM 6 C C12 JDA . . . D 4 158.222 119.633 123.045 1 13.43 ? C12 JDA 1001 D 1 
HETATM 7 C C13 JDA . . . D 4 157.896 119.906 121.762 1 13.43 ? C13 JDA 1001 D 1 
HETATM 8 C C14 JDA . . . D 4 165.598 122.919 127.905 1 13.43 ? C14 JDA 1001 D 1 
HETATM 9 C C15 JDA . . . D 4 165.251 123.13 126.569 1 13.43 ? C15 JDA 1001 D 1 
HETATM 10 C C16 JDA . . . D 4 166.118 123.775 125.706 1 13.43 ? C16 JDA 1001 D 1 
HETATM 11 C C17 JDA . . . D 4 167.338 124.217 126.154 1 13.43 ? C17 JDA 1001 D 1 
HETATM 12 C C18 JDA . . . D 4 167.706 124.02 127.473 1 13.43 ? C18 JDA 1001 D 1 
HETATM 13 C C19 JDA . . . D 4 166.851 123.371 128.358 1 13.43 ? C19 JDA 1001 D 1 
HETATM 14 C C2 JDA . . . D 4 163.387 122.157 130.669 1 13.43 ? C2 JDA 1001 D 1 
HETATM 15 C C20 JDA . . . D 4 167.305 123.154 129.792 1 13.43 ? C20 JDA 1001 D 1 
HETATM 16 C C21 JDA . . . D 4 168.45 122.148 129.877 1 13.43 ? C21 JDA 1001 D 1 
HETATM 17 C C22 JDA . . . D 4 167.7 124.468 130.457 1 13.43 ? C22 JDA 1001 D 1 
HETATM 18 C C3 JDA . . . D 4 164.624 122.209 128.772 1 13.43 ? C3 JDA 1001 D 1 
HETATM 19 C C4 JDA . . . D 4 163.259 120.403 129.103 1 13.43 ? C4 JDA 1001 D 1 
HETATM 20 C C5 JDA . . . D 4 163.162 118.632 127.407 1 13.43 ? C5 JDA 1001 D 1 
HETATM 21 C C6 JDA . . . D 4 162.211 118.95 126.279 1 13.43 ? C6 JDA 1001 D 1 
HETATM 22 C C7 JDA . . . D 4 162.592 119.781 125.234 1 13.43 ? C7 JDA 1001 D 1 
HETATM 23 C C8 JDA . . . D 4 161.724 120.067 124.195 1 13.43 ? C8 JDA 1001 D 1 
HETATM 24 C C9 JDA . . . D 4 160.451 119.518 124.188 1 13.43 ? C9 JDA 1001 D 1 
HETATM 25 N N1 JDA . . . D 4 164.154 121.031 128.327 1 13.43 ? N1 JDA 1001 D 1 
HETATM 26 N N2 JDA . . . D 4 162.77 119.231 128.671 1 13.43 ? N2 JDA 1001 D 1 
HETATM 27 N N3 JDA . . . D 4 159.571 119.758 123.092 1 13.43 ? N3 JDA 1001 D 1 
HETATM 28 N N4 JDA . . . D 4 159.029 120.193 121.07 1 13.43 ? N4 JDA 1001 D 1 
HETATM 29 N N5 JDA . . . D 4 160.062 120.108 121.879 1 13.43 ? N5 JDA 1001 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#