data_7ZH5 # _model_server_result.job_id MiPa-tTMAtfpsGCaxbg4gg _model_server_result.datetime_utc '2024-11-14 18:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1303}' # _entry.id 7ZH5 # _exptl.entry_id 7ZH5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZH5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 128 1_555 A SG CYS 146 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 265 A CYS 278 1_555 A SG CYS 275 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 310 A CYS 323 1_555 A SG CYS 335 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 365 A CYS 378 1_555 A SG CYS 498 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 511 A CYS 524 1_555 A SG CYS 563 A CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 590 A CYS 603 1_555 A SG CYS 622 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 635 A CYS 648 1_555 A SG CYS 644 A CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 707 A CYS 720 1_555 A SG CYS 729 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 712 A CYS 725 1_555 A SG CYS 718 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 1001 A CYS 1014 1_555 A SG CYS 1012 A CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 1051 A CYS 1064 1_555 A SG CYS 1095 A CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 B SG CYS 265 B CYS 278 1_555 B SG CYS 275 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 B SG CYS 310 B CYS 323 1_555 B SG CYS 335 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 353 B CYS 366 1_555 B SG CYS 406 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 B SG CYS 365 B CYS 378 1_555 B SG CYS 498 B CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 511 B CYS 524 1_555 B SG CYS 563 B CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf17 B SG CYS 590 B CYS 603 1_555 B SG CYS 622 B CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf18 B SG CYS 635 B CYS 648 1_555 B SG CYS 644 B CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 B SG CYS 707 B CYS 720 1_555 B SG CYS 729 B CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 B SG CYS 712 B CYS 725 1_555 B SG CYS 718 B CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 B SG CYS 1001 B CYS 1014 1_555 B SG CYS 1012 B CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 B SG CYS 1051 B CYS 1064 1_555 B SG CYS 1095 B CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf23 C SG CYS 265 C CYS 278 1_555 C SG CYS 275 C CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf24 C SG CYS 353 C CYS 366 1_555 C SG CYS 406 C CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 C SG CYS 365 C CYS 378 1_555 C SG CYS 498 C CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 C SG CYS 511 C CYS 524 1_555 C SG CYS 563 C CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf27 C SG CYS 590 C CYS 603 1_555 C SG CYS 622 C CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf28 C SG CYS 635 C CYS 648 1_555 C SG CYS 644 C CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 C SG CYS 707 C CYS 720 1_555 C SG CYS 729 C CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf30 C SG CYS 712 C CYS 725 1_555 C SG CYS 718 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf31 C SG CYS 1001 C CYS 1014 1_555 C SG CYS 1012 C CYS 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 C SG CYS 1051 C CYS 1064 1_555 C SG CYS 1095 C CYS 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 52 A ASN 65 1_555 D C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 145 A ASN 158 1_555 E C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 214 A ASN 227 1_555 F C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 256 A ASN 269 1_555 G C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 678 A ASN 691 1_555 H C1 NAG . A NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 A ND2 ASN 686 A ASN 699 1_555 I C1 NAG . A NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 A ND2 ASN 770 A ASN 783 1_555 J C1 NAG . A NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 A ND2 ASN 1043 A ASN 1056 1_555 K C1 NAG . A NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 A ND2 ASN 1067 A ASN 1080 1_555 L C1 NAG . A NAG 1309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 B ND2 ASN 305 B ASN 318 1_555 M C1 NAG . B NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 B ND2 ASN 589 B ASN 602 1_555 N C1 NAG . B NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 B ND2 ASN 678 B ASN 691 1_555 O C1 NAG . B NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 B ND2 ASN 686 B ASN 699 1_555 P C1 NAG . B NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 B ND2 ASN 770 B ASN 783 1_555 Q C1 NAG . B NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 B ND2 ASN 1043 B ASN 1056 1_555 R C1 NAG . B NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 B ND2 ASN 1067 B ASN 1080 1_555 S C1 NAG . B NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 C ND2 ASN 214 C ASN 227 1_555 T C1 NAG . C NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 C ND2 ASN 256 C ASN 269 1_555 U C1 NAG . C NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 C ND2 ASN 589 C ASN 602 1_555 V C1 NAG . C NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale20 C ND2 ASN 678 C ASN 691 1_555 W C1 NAG . C NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale21 C ND2 ASN 686 C ASN 699 1_555 X C1 NAG . C NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 C ND2 ASN 770 C ASN 783 1_555 Y C1 NAG . C NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale23 C ND2 ASN 1043 C ASN 1056 1_555 Z C1 NAG . C NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7ZH5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 1301 1120 NAG NAG . E 2 NAG A 1 1302 1121 NAG NAG . F 2 NAG A 1 1303 1122 NAG NAG . G 2 NAG A 1 1304 1123 NAG NAG . H 2 NAG A 1 1305 1124 NAG NAG . I 2 NAG A 1 1306 1125 NAG NAG . J 2 NAG A 1 1307 1126 NAG NAG . K 2 NAG A 1 1308 1127 NAG NAG . L 2 NAG A 1 1309 1128 NAG NAG . M 2 NAG B 1 1301 1121 NAG NAG . N 2 NAG B 1 1302 1122 NAG NAG . O 2 NAG B 1 1303 1123 NAG NAG . P 2 NAG B 1 1304 1124 NAG NAG . Q 2 NAG B 1 1305 1125 NAG NAG . R 2 NAG B 1 1306 1126 NAG NAG . S 2 NAG B 1 1307 1127 NAG NAG . T 2 NAG C 1 1301 1120 NAG NAG . U 2 NAG C 1 1302 1121 NAG NAG . V 2 NAG C 1 1303 1122 NAG NAG . W 2 NAG C 1 1304 1123 NAG NAG . X 2 NAG C 1 1305 1124 NAG NAG . Y 2 NAG C 1 1306 1125 NAG NAG . Z 2 NAG C 1 1307 1126 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 2 107.796 77.331 128.816 1 23.34 ? C1 NAG 1303 C 1 HETATM 2 C C2 NAG . . . V 2 109.092 76.943 128.117 1 23.34 ? C2 NAG 1303 C 1 HETATM 3 C C3 NAG . . . V 2 109.398 75.469 128.361 1 23.34 ? C3 NAG 1303 C 1 HETATM 4 C C4 NAG . . . V 2 109.398 75.165 129.853 1 23.34 ? C4 NAG 1303 C 1 HETATM 5 C C5 NAG . . . V 2 108.103 75.654 130.501 1 23.34 ? C5 NAG 1303 C 1 HETATM 6 C C6 NAG . . . V 2 108.112 75.528 132.007 1 23.34 ? C6 NAG 1303 C 1 HETATM 7 C C7 NAG . . . V 2 109.594 78.294 126.132 1 23.34 ? C7 NAG 1303 C 1 HETATM 8 C C8 NAG . . . V 2 110.325 79.212 127.063 1 23.34 ? C8 NAG 1303 C 1 HETATM 9 N N2 NAG . . . V 2 109.023 77.223 126.693 1 23.34 ? N2 NAG 1303 C 1 HETATM 10 O O3 NAG . . . V 2 110.666 75.151 127.799 1 23.34 ? O3 NAG 1303 C 1 HETATM 11 O O4 NAG . . . V 2 109.525 73.763 130.06 1 23.34 ? O4 NAG 1303 C 1 HETATM 12 O O5 NAG . . . V 2 107.899 77.044 130.208 1 23.34 ? O5 NAG 1303 C 1 HETATM 13 O O6 NAG . . . V 2 107.763 76.755 132.634 1 23.34 ? O6 NAG 1303 C 1 HETATM 14 O O7 NAG . . . V 2 109.523 78.511 124.927 1 23.34 ? O7 NAG 1303 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #