data_7ZHN # _model_server_result.job_id zhMCMSx0LvqcD5L78nNTWg _model_server_result.datetime_utc '2024-11-26 11:46:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 7ZHN # _exptl.entry_id 7ZHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.399 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.23 _cell.angle_gamma 90 _cell.entry_id 7ZHN _cell.length_a 171.752 _cell.length_b 39.556 _cell.length_c 49.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 N4 O' _chem_comp.formula_weight 332.399 _chem_comp.id VP7 _chem_comp.mon_nstd_flag . _chem_comp.name "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 VP7 sing 389 n n O1 C12 VP7 sing 390 n n C12 C14 VP7 sing 391 n n C12 C11 VP7 sing 392 n n C11 C10 VP7 trip 393 n n C10 C9 VP7 sing 394 n n C9 C15 VP7 doub 395 n y C9 C8 VP7 sing 396 n y C15 C16 VP7 sing 397 n y C8 C7 VP7 doub 398 n y N2 C4 VP7 sing 399 n n C16 C17 VP7 doub 400 n y C7 C17 VP7 sing 401 n y C7 C6 VP7 sing 402 n y N3 C4 VP7 doub 403 n y N3 C5 VP7 sing 404 n y C4 N1 VP7 sing 405 n y C17 N4 VP7 sing 406 n y C6 C5 VP7 sing 407 n n C6 C18 VP7 doub 408 n y C5 C2 VP7 doub 409 n y N1 C3 VP7 doub 410 n y N4 C18 VP7 sing 411 n y C18 C19 VP7 sing 412 n n C3 C2 VP7 sing 413 n y C2 C1 VP7 sing 414 n n C20 C19 VP7 sing 415 n n C20 C1 VP7 sing 416 n n C8 H1 VP7 sing 417 n n C13 H2 VP7 sing 418 n n C13 H3 VP7 sing 419 n n C13 H4 VP7 sing 420 n n C15 H5 VP7 sing 421 n n C20 H6 VP7 sing 422 n n C20 H7 VP7 sing 423 n n C1 H8 VP7 sing 424 n n C1 H9 VP7 sing 425 n n C14 H10 VP7 sing 426 n n C14 H11 VP7 sing 427 n n C14 H12 VP7 sing 428 n n C16 H13 VP7 sing 429 n n C19 H14 VP7 sing 430 n n C19 H15 VP7 sing 431 n n C3 H16 VP7 sing 432 n n N2 H17 VP7 sing 433 n n N2 H18 VP7 sing 434 n n N4 H19 VP7 sing 435 n n O1 H20 VP7 sing 436 n n # _atom_sites.entry_id 7ZHN _atom_sites.fract_transf_matrix[1][1] 0.005822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 3 EDO A 1 402 6 EDO EDO . D 3 EDO A 1 403 7 EDO EDO . E 3 EDO A 1 404 8 EDO EDO . F 3 EDO A 1 405 9 EDO EDO . G 3 EDO A 1 406 10 EDO EDO . H 3 EDO A 1 407 11 EDO EDO . I 4 VP7 A 1 408 1 VP7 YYY . J 5 HOH A 1 501 211 HOH HOH . J 5 HOH A 2 502 131 HOH HOH . J 5 HOH A 3 503 221 HOH HOH . J 5 HOH A 4 504 189 HOH HOH . J 5 HOH A 5 505 53 HOH HOH . J 5 HOH A 6 506 194 HOH HOH . J 5 HOH A 7 507 227 HOH HOH . J 5 HOH A 8 508 77 HOH HOH . J 5 HOH A 9 509 97 HOH HOH . J 5 HOH A 10 510 170 HOH HOH . J 5 HOH A 11 511 56 HOH HOH . J 5 HOH A 12 512 45 HOH HOH . J 5 HOH A 13 513 180 HOH HOH . J 5 HOH A 14 514 60 HOH HOH . J 5 HOH A 15 515 96 HOH HOH . J 5 HOH A 16 516 49 HOH HOH . J 5 HOH A 17 517 155 HOH HOH . J 5 HOH A 18 518 44 HOH HOH . J 5 HOH A 19 519 103 HOH HOH . J 5 HOH A 20 520 121 HOH HOH . J 5 HOH A 21 521 200 HOH HOH . J 5 HOH A 22 522 82 HOH HOH . J 5 HOH A 23 523 166 HOH HOH . J 5 HOH A 24 524 87 HOH HOH . J 5 HOH A 25 525 92 HOH HOH . J 5 HOH A 26 526 225 HOH HOH . J 5 HOH A 27 527 63 HOH HOH . J 5 HOH A 28 528 107 HOH HOH . J 5 HOH A 29 529 144 HOH HOH . J 5 HOH A 30 530 86 HOH HOH . J 5 HOH A 31 531 197 HOH HOH . J 5 HOH A 32 532 110 HOH HOH . J 5 HOH A 33 533 80 HOH HOH . J 5 HOH A 34 534 215 HOH HOH . J 5 HOH A 35 535 112 HOH HOH . J 5 HOH A 36 536 104 HOH HOH . J 5 HOH A 37 537 15 HOH HOH . J 5 HOH A 38 538 90 HOH HOH . J 5 HOH A 39 539 224 HOH HOH . J 5 HOH A 40 540 161 HOH HOH . J 5 HOH A 41 541 220 HOH HOH . J 5 HOH A 42 542 98 HOH HOH . J 5 HOH A 43 543 208 HOH HOH . J 5 HOH A 44 544 100 HOH HOH . J 5 HOH A 45 545 42 HOH HOH . J 5 HOH A 46 546 78 HOH HOH . J 5 HOH A 47 547 38 HOH HOH . J 5 HOH A 48 548 176 HOH HOH . J 5 HOH A 49 549 51 HOH HOH . J 5 HOH A 50 550 13 HOH HOH . J 5 HOH A 51 551 37 HOH HOH . J 5 HOH A 52 552 41 HOH HOH . J 5 HOH A 53 553 83 HOH HOH . J 5 HOH A 54 554 5 HOH HOH . J 5 HOH A 55 555 182 HOH HOH . J 5 HOH A 56 556 202 HOH HOH . J 5 HOH A 57 557 165 HOH HOH . J 5 HOH A 58 558 48 HOH HOH . J 5 HOH A 59 559 12 HOH HOH . J 5 HOH A 60 560 19 HOH HOH . J 5 HOH A 61 561 3 HOH HOH . J 5 HOH A 62 562 46 HOH HOH . J 5 HOH A 63 563 111 HOH HOH . J 5 HOH A 64 564 191 HOH HOH . J 5 HOH A 65 565 20 HOH HOH . J 5 HOH A 66 566 58 HOH HOH . J 5 HOH A 67 567 219 HOH HOH . J 5 HOH A 68 568 18 HOH HOH . J 5 HOH A 69 569 34 HOH HOH . J 5 HOH A 70 570 71 HOH HOH . J 5 HOH A 71 571 126 HOH HOH . J 5 HOH A 72 572 27 HOH HOH . J 5 HOH A 73 573 113 HOH HOH . J 5 HOH A 74 574 70 HOH HOH . J 5 HOH A 75 575 29 HOH HOH . J 5 HOH A 76 576 173 HOH HOH . J 5 HOH A 77 577 168 HOH HOH . J 5 HOH A 78 578 196 HOH HOH . J 5 HOH A 79 579 76 HOH HOH . J 5 HOH A 80 580 174 HOH HOH . J 5 HOH A 81 581 17 HOH HOH . J 5 HOH A 82 582 177 HOH HOH . J 5 HOH A 83 583 4 HOH HOH . J 5 HOH A 84 584 212 HOH HOH . J 5 HOH A 85 585 210 HOH HOH . J 5 HOH A 86 586 54 HOH HOH . J 5 HOH A 87 587 33 HOH HOH . J 5 HOH A 88 588 16 HOH HOH . J 5 HOH A 89 589 26 HOH HOH . J 5 HOH A 90 590 222 HOH HOH . J 5 HOH A 91 591 30 HOH HOH . J 5 HOH A 92 592 40 HOH HOH . J 5 HOH A 93 593 181 HOH HOH . J 5 HOH A 94 594 6 HOH HOH . J 5 HOH A 95 595 64 HOH HOH . J 5 HOH A 96 596 35 HOH HOH . J 5 HOH A 97 597 214 HOH HOH . J 5 HOH A 98 598 108 HOH HOH . J 5 HOH A 99 599 65 HOH HOH . J 5 HOH A 100 600 175 HOH HOH . J 5 HOH A 101 601 79 HOH HOH . J 5 HOH A 102 602 31 HOH HOH . J 5 HOH A 103 603 57 HOH HOH . J 5 HOH A 104 604 72 HOH HOH . J 5 HOH A 105 605 195 HOH HOH . J 5 HOH A 106 606 183 HOH HOH . J 5 HOH A 107 607 207 HOH HOH . J 5 HOH A 108 608 132 HOH HOH . J 5 HOH A 109 609 47 HOH HOH . J 5 HOH A 110 610 95 HOH HOH . J 5 HOH A 111 611 118 HOH HOH . J 5 HOH A 112 612 188 HOH HOH . J 5 HOH A 113 613 164 HOH HOH . J 5 HOH A 114 614 89 HOH HOH . J 5 HOH A 115 615 9 HOH HOH . J 5 HOH A 116 616 185 HOH HOH . J 5 HOH A 117 617 147 HOH HOH . J 5 HOH A 118 618 106 HOH HOH . J 5 HOH A 119 619 2 HOH HOH . J 5 HOH A 120 620 154 HOH HOH . J 5 HOH A 121 621 36 HOH HOH . J 5 HOH A 122 622 74 HOH HOH . J 5 HOH A 123 623 99 HOH HOH . J 5 HOH A 124 624 23 HOH HOH . J 5 HOH A 125 625 198 HOH HOH . J 5 HOH A 126 626 114 HOH HOH . J 5 HOH A 127 627 7 HOH HOH . J 5 HOH A 128 628 66 HOH HOH . J 5 HOH A 129 629 178 HOH HOH . J 5 HOH A 130 630 187 HOH HOH . J 5 HOH A 131 631 143 HOH HOH . J 5 HOH A 132 632 184 HOH HOH . J 5 HOH A 133 633 203 HOH HOH . J 5 HOH A 134 634 22 HOH HOH . J 5 HOH A 135 635 205 HOH HOH . J 5 HOH A 136 636 193 HOH HOH . J 5 HOH A 137 637 59 HOH HOH . J 5 HOH A 138 638 24 HOH HOH . J 5 HOH A 139 639 213 HOH HOH . J 5 HOH A 140 640 186 HOH HOH . J 5 HOH A 141 641 68 HOH HOH . J 5 HOH A 142 642 130 HOH HOH . J 5 HOH A 143 643 11 HOH HOH . J 5 HOH A 144 644 39 HOH HOH . J 5 HOH A 145 645 204 HOH HOH . J 5 HOH A 146 646 10 HOH HOH . J 5 HOH A 147 647 28 HOH HOH . J 5 HOH A 148 648 125 HOH HOH . J 5 HOH A 149 649 217 HOH HOH . J 5 HOH A 150 650 8 HOH HOH . J 5 HOH A 151 651 52 HOH HOH . J 5 HOH A 152 652 140 HOH HOH . J 5 HOH A 153 653 67 HOH HOH . J 5 HOH A 154 654 1 HOH HOH . J 5 HOH A 155 655 192 HOH HOH . J 5 HOH A 156 656 209 HOH HOH . J 5 HOH A 157 657 55 HOH HOH . J 5 HOH A 158 658 119 HOH HOH . J 5 HOH A 159 659 21 HOH HOH . J 5 HOH A 160 660 226 HOH HOH . J 5 HOH A 161 661 201 HOH HOH . J 5 HOH A 162 662 85 HOH HOH . J 5 HOH A 163 663 206 HOH HOH . J 5 HOH A 164 664 127 HOH HOH . J 5 HOH A 165 665 25 HOH HOH . J 5 HOH A 166 666 43 HOH HOH . J 5 HOH A 167 667 50 HOH HOH . J 5 HOH A 168 668 88 HOH HOH . J 5 HOH A 169 669 81 HOH HOH . J 5 HOH A 170 670 61 HOH HOH . J 5 HOH A 171 671 75 HOH HOH . J 5 HOH A 172 672 218 HOH HOH . J 5 HOH A 173 673 190 HOH HOH . J 5 HOH A 174 674 145 HOH HOH . J 5 HOH A 175 675 151 HOH HOH . J 5 HOH A 176 676 149 HOH HOH . J 5 HOH A 177 677 69 HOH HOH . J 5 HOH A 178 678 14 HOH HOH . J 5 HOH A 179 679 157 HOH HOH . J 5 HOH A 180 680 179 HOH HOH . J 5 HOH A 181 681 160 HOH HOH . J 5 HOH A 182 682 148 HOH HOH . J 5 HOH A 183 683 146 HOH HOH . J 5 HOH A 184 684 223 HOH HOH . J 5 HOH A 185 685 150 HOH HOH . J 5 HOH A 186 686 216 HOH HOH . J 5 HOH A 187 687 93 HOH HOH . J 5 HOH A 188 688 153 HOH HOH . J 5 HOH A 189 689 84 HOH HOH . J 5 HOH A 190 690 162 HOH HOH . J 5 HOH A 191 691 134 HOH HOH . J 5 HOH A 192 692 73 HOH HOH . J 5 HOH A 193 693 129 HOH HOH . J 5 HOH A 194 694 163 HOH HOH . J 5 HOH A 195 695 62 HOH HOH . J 5 HOH A 196 696 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VP7 . . . I 4 73.589 37.861 -0.181 1 21.78 ? N1 VP7 408 A 1 HETATM 2 N N3 VP7 . . . I 4 71.4 38.257 0.711 1 21.36 ? N3 VP7 408 A 1 HETATM 3 C C4 VP7 . . . I 4 72.554 37.56 0.62 1 21.65 ? C4 VP7 408 A 1 HETATM 4 C C5 VP7 . . . I 4 71.268 39.33 -0.081 1 21.52 ? C5 VP7 408 A 1 HETATM 5 C C6 VP7 . . . I 4 69.996 40.109 0.024 1 19.94 ? C6 VP7 408 A 1 HETATM 6 C C7 VP7 . . . I 4 68.819 39.584 0.731 1 19.27 ? C7 VP7 408 A 1 HETATM 7 C C8 VP7 . . . I 4 68.546 38.414 1.45 1 19.3 ? C8 VP7 408 A 1 HETATM 8 C C10 VP7 . . . I 4 67.006 37.049 2.796 1 18.19 ? C10 VP7 408 A 1 HETATM 9 C C13 VP7 . . . I 4 66.816 34.993 5.655 1 20.71 ? C13 VP7 408 A 1 HETATM 10 C C15 VP7 . . . I 4 66.265 39.174 1.815 1 19.06 ? C15 VP7 408 A 1 HETATM 11 C C17 VP7 . . . I 4 67.798 40.54 0.586 1 20.09 ? C17 VP7 408 A 1 HETATM 12 C C20 VP7 . . . I 4 71.873 42.154 -1.44 1 22.25 ? C20 VP7 408 A 1 HETATM 13 C C1 VP7 . . . I 4 72.159 40.793 -2.017 1 21.86 ? C1 VP7 408 A 1 HETATM 14 C C11 VP7 . . . I 4 66.727 36.089 3.452 1 18.99 ? C11 VP7 408 A 1 HETATM 15 C C12 VP7 . . . I 4 66.318 34.891 4.223 1 20.42 ? C12 VP7 408 A 1 HETATM 16 C C14 VP7 . . . I 4 66.83 33.634 3.54 1 21.42 ? C14 VP7 408 A 1 HETATM 17 C C16 VP7 . . . I 4 66.524 40.344 1.116 1 20.26 ? C16 VP7 408 A 1 HETATM 18 C C18 VP7 . . . I 4 69.61 41.369 -0.491 1 21.7 ? C18 VP7 408 A 1 HETATM 19 C C19 VP7 . . . I 4 70.381 42.402 -1.259 1 23.2 ? C19 VP7 408 A 1 HETATM 20 C C2 VP7 . . . I 4 72.282 39.707 -0.976 1 23.19 ? C2 VP7 408 A 1 HETATM 21 C C3 VP7 . . . I 4 73.426 38.944 -0.939 1 21.7 ? C3 VP7 408 A 1 HETATM 22 C C9 VP7 . . . I 4 67.271 38.219 2.001 1 19.34 ? C9 VP7 408 A 1 HETATM 23 N N2 VP7 . . . I 4 72.689 36.499 1.411 1 20.5 ? N2 VP7 408 A 1 HETATM 24 N N4 VP7 . . . I 4 68.293 41.612 -0.149 1 21.83 ? N4 VP7 408 A 1 HETATM 25 O O1 VP7 . . . I 4 64.884 34.807 4.259 1 21.26 ? O1 VP7 408 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #