data_7ZHW # _model_server_result.job_id -xEsl4wZK7XGeD0v3RHGKg _model_server_result.datetime_utc '2024-10-20 00:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zhw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 7ZHW # _exptl.entry_id 7ZHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.708 _cell.angle_gamma 90 _cell.entry_id 7ZHW _cell.length_a 215.83 _cell.length_b 66.77 _cell.length_c 121.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 56 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 138 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 138 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BG6 _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BG6 sing 70 n n C1 O1 BG6 sing 71 n n C1 O5 BG6 sing 72 n n C1 H1 BG6 sing 73 n n C2 C3 BG6 sing 74 n n C2 O2 BG6 sing 75 n n C2 H2 BG6 sing 76 n n O1 HO1 BG6 sing 77 n n O5 C5 BG6 sing 78 n n C3 C4 BG6 sing 79 n n C3 O3 BG6 sing 80 n n C3 H3 BG6 sing 81 n n O2 HO2 BG6 sing 82 n n C4 C5 BG6 sing 83 n n C4 O4 BG6 sing 84 n n C4 H4 BG6 sing 85 n n O3 HO3 BG6 sing 86 n n C5 C6 BG6 sing 87 n n C5 H5 BG6 sing 88 n n O4 HO4 BG6 sing 89 n n C6 O6 BG6 sing 90 n n C6 H61 BG6 sing 91 n n C6 H62 BG6 sing 92 n n O6 P BG6 sing 93 n n P O1P BG6 sing 94 n n P O2P BG6 sing 95 n n P O3P BG6 doub 96 n n O1P H1O1 BG6 sing 97 n n O2P H2O2 BG6 sing 98 n n # _pdbx_chem_comp_identifier.comp_id BG6 _pdbx_chem_comp_identifier.identifier b-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7ZHW _atom_sites.fract_transf_matrix[1][1] 0.004633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002752 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 601 601 NDP NDP . D 3 EDO A 1 602 768 EDO EDO . E 3 EDO A 1 603 968 EDO EDO . F 4 SO4 A 1 604 1 SO4 SO4 . G 4 SO4 A 1 605 2 SO4 SO4 . H 4 SO4 A 1 606 5 SO4 SO4 . I 4 SO4 A 1 607 7 SO4 SO4 . J 5 BG6 B 1 601 868 BG6 BG6 . K 2 NDP B 1 602 601 NDP NDP . L 3 EDO B 1 603 768 EDO EDO . M 4 SO4 B 1 604 3 SO4 SO4 . N 4 SO4 B 1 605 4 SO4 SO4 . O 6 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BG6 . . . J 5 -11.994 -53.597 38.149 1 196.32 ? C1 BG6 601 B 1 HETATM 2 C C2 BG6 . . . J 5 -11.733 -52.153 38.591 1 200.69 ? C2 BG6 601 B 1 HETATM 3 O O1 BG6 . . . J 5 -11.467 -54.441 39.08 1 195.81 ? O1 BG6 601 B 1 HETATM 4 O O5 BG6 . . . J 5 -11.389 -53.932 36.812 1 193.76 ? O5 BG6 601 B 1 HETATM 5 C C3 BG6 . . . J 5 -12.055 -51.153 37.524 1 192.6 ? C3 BG6 601 B 1 HETATM 6 O O2 BG6 . . . J 5 -12.539 -51.873 39.744 1 212.92 ? O2 BG6 601 B 1 HETATM 7 C C4 BG6 . . . J 5 -11.445 -51.53 36.212 1 188.16 ? C4 BG6 601 B 1 HETATM 8 O O3 BG6 . . . J 5 -11.516 -49.867 37.925 1 185.78 ? O3 BG6 601 B 1 HETATM 9 C C5 BG6 . . . J 5 -11.803 -52.953 35.784 1 191.64 ? C5 BG6 601 B 1 HETATM 10 O O4 BG6 . . . J 5 -11.916 -50.656 35.17 1 183.65 ? O4 BG6 601 B 1 HETATM 11 C C6 BG6 . . . J 5 -11.101 -53.2 34.505 1 187.77 ? C6 BG6 601 B 1 HETATM 12 O O6 BG6 . . . J 5 -10.947 -54.594 34.282 1 188.85 ? O6 BG6 601 B 1 HETATM 13 P P BG6 . . . J 5 -10.888 -55.116 32.706 1 192.4 ? P BG6 601 B 1 HETATM 14 O O1P BG6 . . . J 5 -11.141 -56.6 32.655 1 188.69 ? O1P BG6 601 B 1 HETATM 15 O O2P BG6 . . . J 5 -9.527 -54.815 32.128 1 183.6 ? O2P BG6 601 B 1 HETATM 16 O O3P BG6 . . . J 5 -11.941 -54.396 31.909 1 189.23 ? O3P BG6 601 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #