data_7ZI0 # _model_server_result.job_id W8_mpV63JD-X22hN1Y6UTw _model_server_result.datetime_utc '2024-11-30 11:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 7ZI0 # _exptl.entry_id 7ZI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.059 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.29 _cell.angle_gamma 90 _cell.entry_id 7ZI0 _cell.length_a 122.86 _cell.length_b 63.15 _cell.length_c 208.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 64 1_555 A SG CYS 147 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 39 A CYS 70 1_555 A SG CYS 103 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 96 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 87 A CYS 118 1_555 A SG CYS 123 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf5 A SG CYS 116 A CYS 147 1_555 A SG CYS 138 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf6 A SG CYS 162 A CYS 193 1_555 A SG CYS 182 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 186 A CYS 217 1_555 A SG CYS 264 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 A SG CYS 283 A CYS 314 1_555 A SG CYS 359 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 A SG CYS 563 A CYS 594 1_555 A SG CYS 580 A CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf10 B SG CYS 33 B CYS 64 1_555 B SG CYS 147 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf11 B SG CYS 39 B CYS 70 1_555 B SG CYS 103 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf12 B SG CYS 47 B CYS 78 1_555 B SG CYS 96 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf13 B SG CYS 87 B CYS 118 1_555 B SG CYS 123 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf14 B SG CYS 116 B CYS 147 1_555 B SG CYS 138 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 B SG CYS 162 B CYS 193 1_555 B SG CYS 182 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 186 B CYS 217 1_555 B SG CYS 264 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 283 B CYS 314 1_555 B SG CYS 359 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf18 B SG CYS 563 B CYS 594 1_555 B SG CYS 580 B CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 157 A ASN 188 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc1 A O THR 59 A THR 90 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O ALA 62 A ALA 93 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O SER 65 A SER 96 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 A OE2 GLU 274 A GLU 305 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc5 A O THR 276 A THR 307 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C28 H28 Cl N3 O S' _chem_comp.formula_weight 490.059 _chem_comp.id V0S _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N11 V0S sing 527 n n N11 C10 V0S sing 528 n n C10 C13 V0S sing 529 n n C10 C09 V0S sing 530 n n C13 C14 V0S sing 531 n n C09 C08 V0S sing 532 n n C14 C07 V0S sing 533 n n C08 C07 V0S sing 534 n n C07 N06 V0S sing 535 n n N06 C15 V0S sing 536 n n N06 C05 V0S sing 537 n n O28 C15 V0S doub 538 n n C15 C16 V0S sing 539 n n C05 C04 V0S sing 540 n n C03 C04 V0S doub 541 n y C03 C38 V0S sing 542 n y C04 C29 V0S sing 543 n y C16 C17 V0S doub 544 n y C16 S27 V0S sing 545 n y C38 C37 V0S doub 546 n y CL18 C17 V0S sing 547 n n C17 C19 V0S sing 548 n y C29 C30 V0S doub 549 n y S27 C20 V0S sing 550 n y C37 C30 V0S sing 551 n y C30 C31 V0S sing 552 n n C19 C20 V0S doub 553 n y C19 C25 V0S sing 554 n y C20 C21 V0S sing 555 n y C31 C32 V0S doub 556 n y C31 C36 V0S sing 557 n y C25 C24 V0S doub 558 n y C21 C23 V0S doub 559 n y C32 C33 V0S sing 560 n y C36 C35 V0S doub 561 n y C24 C23 V0S sing 562 n y C33 N34 V0S doub 563 n y C35 N34 V0S sing 564 n y C10 H1 V0S sing 565 n n C14 H2 V0S sing 566 n n C14 H3 V0S sing 567 n n C13 H4 V0S sing 568 n n C13 H5 V0S sing 569 n n C12 H6 V0S sing 570 n n C12 H7 V0S sing 571 n n C12 H8 V0S sing 572 n n C21 H9 V0S sing 573 n n C24 H10 V0S sing 574 n n C03 H11 V0S sing 575 n n C05 H12 V0S sing 576 n n C05 H13 V0S sing 577 n n C07 H14 V0S sing 578 n n C08 H15 V0S sing 579 n n C08 H16 V0S sing 580 n n C09 H17 V0S sing 581 n n C09 H18 V0S sing 582 n n C23 H19 V0S sing 583 n n C25 H20 V0S sing 584 n n C29 H21 V0S sing 585 n n C32 H22 V0S sing 586 n n C33 H23 V0S sing 587 n n C35 H24 V0S sing 588 n n C36 H25 V0S sing 589 n n C37 H26 V0S sing 590 n n C38 H27 V0S sing 591 n n N11 H28 V0S sing 592 n n # _atom_sites.entry_id 7ZI0 _atom_sites.fract_transf_matrix[1][1] 0.008139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000897 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V0S A 1 701 1 V0S SG9 . D 3 CLR A 1 702 1 CLR CLR . E 4 NAG A 1 703 1 NAG NAG . F 5 NA A 1 704 1 NA NA . G 5 NA A 1 705 2 NA NA . H 6 MPG A 1 706 1 MPG MPG . I 2 V0S B 1 701 2 V0S SG9 . J 3 CLR B 1 702 2 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 V0S . . . I 2 2.395 -14.032 34.188 1 163.73 ? C10 V0S 701 B 1 HETATM 2 C C14 V0S . . . I 2 2.957 -12.382 32.396 1 163.34 ? C14 V0S 701 B 1 HETATM 3 C C13 V0S . . . I 2 2.128 -12.64 33.652 1 168.81 ? C13 V0S 701 B 1 HETATM 4 C C12 V0S . . . I 2 2.514 -14.49 36.6 1 156.03 ? C12 V0S 701 B 1 HETATM 5 C C15 V0S . . . I 2 2.958 -12.738 28.994 1 128.56 ? C15 V0S 701 B 1 HETATM 6 C C17 V0S . . . I 2 3.952 -14.152 27.116 1 119.32 ? C17 V0S 701 B 1 HETATM 7 C C19 V0S . . . I 2 4.743 -14.047 25.918 1 123.6 ? C19 V0S 701 B 1 HETATM 8 C C20 V0S . . . I 2 4.98 -12.7 25.598 1 124.85 ? C20 V0S 701 B 1 HETATM 9 C C21 V0S . . . I 2 5.738 -12.393 24.478 1 125.87 ? C21 V0S 701 B 1 HETATM 10 C C24 V0S . . . I 2 6.048 -14.724 24.018 1 124.83 ? C24 V0S 701 B 1 HETATM 11 C C03 V0S . . . I 2 5.984 -11.246 29.939 1 128.07 ? C03 V0S 701 B 1 HETATM 12 C C04 V0S . . . I 2 5.935 -12.586 29.581 1 126.7 ? C04 V0S 701 B 1 HETATM 13 C C05 V0S . . . I 2 4.959 -13.528 30.256 1 134.19 ? C05 V0S 701 B 1 HETATM 14 C C07 V0S . . . I 2 2.69 -13.443 31.326 1 156.74 ? C07 V0S 701 B 1 HETATM 15 C C08 V0S . . . I 2 2.863 -14.863 31.872 1 165.71 ? C08 V0S 701 B 1 HETATM 16 C C09 V0S . . . I 2 2.043 -15.073 33.144 1 171.09 ? C09 V0S 701 B 1 HETATM 17 C C16 V0S . . . I 2 3.628 -12.953 27.673 1 121.77 ? C16 V0S 701 B 1 HETATM 18 C C23 V0S . . . I 2 6.273 -13.392 23.692 1 133.57 ? C23 V0S 701 B 1 HETATM 19 C C25 V0S . . . I 2 5.293 -15.039 25.127 1 122.64 ? C25 V0S 701 B 1 HETATM 20 C C29 V0S . . . I 2 6.814 -13.06 28.596 1 111.33 ? C29 V0S 701 B 1 HETATM 21 C C30 V0S . . . I 2 7.722 -12.209 27.958 1 115.85 ? C30 V0S 701 B 1 HETATM 22 C C31 V0S . . . I 2 8.588 -12.692 26.93 1 128.91 ? C31 V0S 701 B 1 HETATM 23 C C32 V0S . . . I 2 8.582 -14.025 26.542 1 130.98 ? C32 V0S 701 B 1 HETATM 24 C C33 V0S . . . I 2 9.421 -14.451 25.527 1 124.31 ? C33 V0S 701 B 1 HETATM 25 C C35 V0S . . . I 2 10.256 -12.345 25.242 1 126.67 ? C35 V0S 701 B 1 HETATM 26 C C36 V0S . . . I 2 9.448 -11.843 26.246 1 125.14 ? C36 V0S 701 B 1 HETATM 27 C C37 V0S . . . I 2 7.737 -10.862 28.341 1 120.81 ? C37 V0S 701 B 1 HETATM 28 C C38 V0S . . . I 2 6.878 -10.389 29.323 1 121.09 ? C38 V0S 701 B 1 HETATM 29 N N06 V0S . . . I 2 3.515 -13.201 30.104 1 138.17 ? N06 V0S 701 B 1 HETATM 30 N N11 V0S . . . I 2 1.664 -14.255 35.449 1 150.29 ? N11 V0S 701 B 1 HETATM 31 N N34 V0S . . . I 2 10.253 -13.631 24.883 1 128 ? N34 V0S 701 B 1 HETATM 32 O O28 V0S . . . I 2 1.916 -12.107 29.019 1 125.99 ? O28 V0S 701 B 1 HETATM 33 S S27 V0S . . . I 2 4.213 -11.611 26.718 1 116.6 ? S27 V0S 701 B 1 HETATM 34 CL CL18 V0S . . . I 2 3.596 -15.704 27.788 1 128.51 ? CL18 V0S 701 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #