data_7ZI0 # _model_server_result.job_id qDx7gRnkNrAAlzcB-JZn1g _model_server_result.datetime_utc '2024-11-30 11:00:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7ZI0 # _exptl.entry_id 7ZI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.29 _cell.angle_gamma 90 _cell.entry_id 7ZI0 _cell.length_a 122.86 _cell.length_b 63.15 _cell.length_c 208.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 64 1_555 A SG CYS 147 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 39 A CYS 70 1_555 A SG CYS 103 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 96 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 87 A CYS 118 1_555 A SG CYS 123 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf5 A SG CYS 116 A CYS 147 1_555 A SG CYS 138 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf6 A SG CYS 162 A CYS 193 1_555 A SG CYS 182 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 186 A CYS 217 1_555 A SG CYS 264 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 A SG CYS 283 A CYS 314 1_555 A SG CYS 359 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 A SG CYS 563 A CYS 594 1_555 A SG CYS 580 A CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf10 B SG CYS 33 B CYS 64 1_555 B SG CYS 147 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf11 B SG CYS 39 B CYS 70 1_555 B SG CYS 103 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf12 B SG CYS 47 B CYS 78 1_555 B SG CYS 96 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf13 B SG CYS 87 B CYS 118 1_555 B SG CYS 123 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf14 B SG CYS 116 B CYS 147 1_555 B SG CYS 138 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 B SG CYS 162 B CYS 193 1_555 B SG CYS 182 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 186 B CYS 217 1_555 B SG CYS 264 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 283 B CYS 314 1_555 B SG CYS 359 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf18 B SG CYS 563 B CYS 594 1_555 B SG CYS 580 B CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 157 A ASN 188 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc1 A O THR 59 A THR 90 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O ALA 62 A ALA 93 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O SER 65 A SER 96 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 A OE2 GLU 274 A GLU 305 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc5 A O THR 276 A THR 307 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 376 n n C1 O1 NAG sing 377 n n C1 O5 NAG sing 378 n n C1 H1 NAG sing 379 n n C2 C3 NAG sing 380 n n C2 N2 NAG sing 381 n n C2 H2 NAG sing 382 n n C3 C4 NAG sing 383 n n C3 O3 NAG sing 384 n n C3 H3 NAG sing 385 n n C4 C5 NAG sing 386 n n C4 O4 NAG sing 387 n n C4 H4 NAG sing 388 n n C5 C6 NAG sing 389 n n C5 O5 NAG sing 390 n n C5 H5 NAG sing 391 n n C6 O6 NAG sing 392 n n C6 H61 NAG sing 393 n n C6 H62 NAG sing 394 n n C7 C8 NAG sing 395 n n C7 N2 NAG sing 396 n n C7 O7 NAG doub 397 n n C8 H81 NAG sing 398 n n C8 H82 NAG sing 399 n n C8 H83 NAG sing 400 n n N2 HN2 NAG sing 401 n n O1 HO1 NAG sing 402 n n O3 HO3 NAG sing 403 n n O4 HO4 NAG sing 404 n n O6 HO6 NAG sing 405 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7ZI0 _atom_sites.fract_transf_matrix[1][1] 0.008139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000897 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V0S A 1 701 1 V0S SG9 . D 3 CLR A 1 702 1 CLR CLR . E 4 NAG A 1 703 1 NAG NAG . F 5 NA A 1 704 1 NA NA . G 5 NA A 1 705 2 NA NA . H 6 MPG A 1 706 1 MPG MPG . I 2 V0S B 1 701 2 V0S SG9 . J 3 CLR B 1 702 2 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -51.251 -14.706 103.028 1 153.44 ? C1 NAG 703 A 1 HETATM 2 C C2 NAG . . . E 4 -51.629 -14.159 101.652 1 176.15 ? C2 NAG 703 A 1 HETATM 3 C C3 NAG . . . E 4 -52.089 -12.708 101.835 1 197.22 ? C3 NAG 703 A 1 HETATM 4 C C4 NAG . . . E 4 -53.126 -12.554 102.967 1 194.23 ? C4 NAG 703 A 1 HETATM 5 C C5 NAG . . . E 4 -52.723 -13.324 104.251 1 176.27 ? C5 NAG 703 A 1 HETATM 6 C C6 NAG . . . E 4 -53.826 -13.343 105.316 1 162.76 ? C6 NAG 703 A 1 HETATM 7 C C7 NAG . . . E 4 -50.478 -14.775 99.516 1 129.13 ? C7 NAG 703 A 1 HETATM 8 C C8 NAG . . . E 4 -49.189 -14.754 98.726 1 121.48 ? C8 NAG 703 A 1 HETATM 9 N N2 NAG . . . E 4 -50.48 -14.228 100.741 1 150.33 ? N2 NAG 703 A 1 HETATM 10 O O3 NAG . . . E 4 -52.608 -12.207 100.591 1 221.76 ? O3 NAG 703 A 1 HETATM 11 O O4 NAG . . . E 4 -53.306 -11.147 103.233 1 188.35 ? O4 NAG 703 A 1 HETATM 12 O O5 NAG . . . E 4 -52.354 -14.679 103.937 1 157.99 ? O5 NAG 703 A 1 HETATM 13 O O6 NAG . . . E 4 -53.402 -14.078 106.477 1 135.22 ? O6 NAG 703 A 1 HETATM 14 O O7 NAG . . . E 4 -51.477 -15.27 99.039 1 121.36 ? O7 NAG 703 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #