data_7ZI0 # _model_server_result.job_id 6g4GmW4ViYu1SQJluveUgw _model_server_result.datetime_utc '2024-11-27 07:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":706}' # _entry.id 7ZI0 # _exptl.entry_id 7ZI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.29 _cell.angle_gamma 90 _cell.entry_id 7ZI0 _cell.length_a 122.86 _cell.length_b 63.15 _cell.length_c 208.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 64 1_555 A SG CYS 147 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 39 A CYS 70 1_555 A SG CYS 103 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 96 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 87 A CYS 118 1_555 A SG CYS 123 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf5 A SG CYS 116 A CYS 147 1_555 A SG CYS 138 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf6 A SG CYS 162 A CYS 193 1_555 A SG CYS 182 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 186 A CYS 217 1_555 A SG CYS 264 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 A SG CYS 283 A CYS 314 1_555 A SG CYS 359 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 A SG CYS 563 A CYS 594 1_555 A SG CYS 580 A CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf10 B SG CYS 33 B CYS 64 1_555 B SG CYS 147 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf11 B SG CYS 39 B CYS 70 1_555 B SG CYS 103 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf12 B SG CYS 47 B CYS 78 1_555 B SG CYS 96 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf13 B SG CYS 87 B CYS 118 1_555 B SG CYS 123 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf14 B SG CYS 116 B CYS 147 1_555 B SG CYS 138 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 B SG CYS 162 B CYS 193 1_555 B SG CYS 182 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 186 B CYS 217 1_555 B SG CYS 264 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 283 B CYS 314 1_555 B SG CYS 359 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf18 B SG CYS 563 B CYS 594 1_555 B SG CYS 580 B CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 157 A ASN 188 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc1 A O THR 59 A THR 90 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O ALA 62 A ALA 93 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O SER 65 A SER 96 1_555 F NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc4 A OE2 GLU 274 A GLU 305 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc5 A O THR 276 A THR 307 1_555 G NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 312 n n C2 C1 MPG sing 313 n n C3 C4 MPG sing 314 n n C4 C5 MPG sing 315 n n C5 C6 MPG sing 316 n n C6 C7 MPG sing 317 n n C7 C8 MPG sing 318 n n C8 C9 MPG sing 319 n n C9 C10 MPG doub 320 z n C10 C11 MPG sing 321 n n C11 C12 MPG sing 322 n n C12 C13 MPG sing 323 n n C13 C14 MPG sing 324 n n C14 C15 MPG sing 325 n n C15 C16 MPG sing 326 n n C16 C17 MPG sing 327 n n C17 C18 MPG sing 328 n n O1 C1 MPG sing 329 n n O1 CX3 MPG sing 330 n n CXD O2 MPG sing 331 n n CXD C21 MPG sing 332 n n CXD CX3 MPG sing 333 n n C21 O3 MPG sing 334 n n C2 H21C MPG sing 335 n n C2 H22C MPG sing 336 n n C3 H31C MPG sing 337 n n C3 H32C MPG sing 338 n n CX3 O4 MPG doub 339 n n C4 H41C MPG sing 340 n n C4 H42C MPG sing 341 n n C5 H51C MPG sing 342 n n C5 H52C MPG sing 343 n n C6 H61C MPG sing 344 n n C6 H62C MPG sing 345 n n C7 H71C MPG sing 346 n n C7 H72C MPG sing 347 n n C8 H81C MPG sing 348 n n C8 H82C MPG sing 349 n n C9 H9 MPG sing 350 n n C10 H10 MPG sing 351 n n C11 H111 MPG sing 352 n n C11 H112 MPG sing 353 n n C12 H121 MPG sing 354 n n C12 H122 MPG sing 355 n n C13 H131 MPG sing 356 n n C13 H132 MPG sing 357 n n C14 H141 MPG sing 358 n n C14 H142 MPG sing 359 n n C15 H151 MPG sing 360 n n C15 H152 MPG sing 361 n n C16 H161 MPG sing 362 n n C16 H162 MPG sing 363 n n C17 H171 MPG sing 364 n n C17 H172 MPG sing 365 n n C18 H181 MPG sing 366 n n C18 H182 MPG sing 367 n n C18 H183 MPG sing 368 n n C1 HX31 MPG sing 369 n n C1 HX32 MPG sing 370 n n CXD HXD MPG sing 371 n n O2 H2 MPG sing 372 n n C21 H211 MPG sing 373 n n C21 H212 MPG sing 374 n n O3 H3 MPG sing 375 n n # _atom_sites.entry_id 7ZI0 _atom_sites.fract_transf_matrix[1][1] 0.008139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000897 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V0S A 1 701 1 V0S SG9 . D 3 CLR A 1 702 1 CLR CLR . E 4 NAG A 1 703 1 NAG NAG . F 5 NA A 1 704 1 NA NA . G 5 NA A 1 705 2 NA NA . H 6 MPG A 1 706 1 MPG MPG . I 2 V0S B 1 701 2 V0S SG9 . J 3 CLR B 1 702 2 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . H 6 -48.51 -34.237 66.866 1 169.45 ? C2 MPG 706 A 1 HETATM 2 C C3 MPG . . . H 6 -49.372 -33.423 65.902 1 167.92 ? C3 MPG 706 A 1 HETATM 3 C C4 MPG . . . H 6 -50.689 -32.934 66.515 1 164.06 ? C4 MPG 706 A 1 HETATM 4 C C5 MPG . . . H 6 -51.46 -31.85 65.754 1 157.08 ? C5 MPG 706 A 1 HETATM 5 C C6 MPG . . . H 6 -50.585 -30.708 65.23 1 151.96 ? C6 MPG 706 A 1 HETATM 6 C C7 MPG . . . H 6 -50.14 -30.804 63.764 1 147.5 ? C7 MPG 706 A 1 HETATM 7 C C8 MPG . . . H 6 -49.917 -32.185 63.126 1 138.57 ? C8 MPG 706 A 1 HETATM 8 C C9 MPG . . . H 6 -49.934 -32.033 61.617 1 130.4 ? C9 MPG 706 A 1 HETATM 9 C C10 MPG . . . H 6 -50.435 -32.984 60.836 1 120.48 ? C10 MPG 706 A 1 HETATM 10 C C11 MPG . . . H 6 -50.435 -32.797 59.334 1 120.74 ? C11 MPG 706 A 1 HETATM 11 C C12 MPG . . . H 6 -49.13 -33.326 58.734 1 123.17 ? C12 MPG 706 A 1 HETATM 12 C C13 MPG . . . H 6 -48.89 -32.94 57.264 1 124.2 ? C13 MPG 706 A 1 HETATM 13 C C14 MPG . . . H 6 -50.119 -33.131 56.373 1 129.45 ? C14 MPG 706 A 1 HETATM 14 C C15 MPG . . . H 6 -49.789 -33.287 54.885 1 128.79 ? C15 MPG 706 A 1 HETATM 15 C C16 MPG . . . H 6 -48.955 -32.156 54.274 1 135.33 ? C16 MPG 706 A 1 HETATM 16 C C17 MPG . . . H 6 -49.381 -30.708 54.591 1 129.23 ? C17 MPG 706 A 1 HETATM 17 C C18 MPG . . . H 6 -50.638 -30.27 53.887 1 117.96 ? C18 MPG 706 A 1 HETATM 18 O O1 MPG . . . H 6 -46.491 -35.628 66.637 1 162.99 ? O1 MPG 706 A 1 HETATM 19 C C1 MPG . . . H 6 -47.094 -34.378 66.303 1 164.47 ? C1 MPG 706 A 1 HETATM 20 C CXD MPG . . . H 6 -45.124 -37.216 65.087 1 144.62 ? CXD MPG 706 A 1 HETATM 21 O O2 MPG . . . H 6 -43.909 -37.859 65.515 1 148.01 ? O2 MPG 706 A 1 HETATM 22 C C21 MPG . . . H 6 -45.133 -36.892 63.571 1 136.05 ? C21 MPG 706 A 1 HETATM 23 O O3 MPG . . . H 6 -44.538 -37.897 62.719 1 119.11 ? O3 MPG 706 A 1 HETATM 24 C CX3 MPG . . . H 6 -45.262 -35.977 65.94 1 149.93 ? CX3 MPG 706 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #