data_7ZI1
#
_model_server_result.job_id            -H-GNIsUeIm4ul_tu-TiCQ 
_model_server_result.datetime_utc      '2024-11-13 05:24:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zi1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZI1 
#
_exptl.entry_id    7ZI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              514.645 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[3-[[4-(4-azanylpyrimidin-2-yl)-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZI1 
_cell.length_a            68.625 
_cell.length_b            68.625 
_cell.length_c            120.809 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 62 A LYS 42 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc2 A O SER 65 A SER 45 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 A O TRP 68 A TRP 48 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc4 E NA NA . A NA 304 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc5 E NA NA . A NA 304 1_555 F O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
#
_chem_comp.formula           'C27 H30 N8 O S' 
_chem_comp.formula_weight    514.645 
_chem_comp.id                JCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[3-[[4-(4-azanylpyrimidin-2-yl)-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 JCA sing 173 n n 
C12 C13 JCA doub 174 n y 
C12 C11 JCA sing 175 n y 
C13 C8 JCA sing 176 n y 
C11 C10 JCA doub 177 n y 
C8 N5 JCA sing 178 n n 
C8 C9 JCA doub 179 n y 
N5 C6 JCA sing 180 n n 
C10 C9 JCA sing 181 n y 
C10 N6 JCA sing 182 n n 
N4 C6 JCA doub 183 n y 
N4 C5 JCA sing 184 n y 
C6 S1 JCA sing 185 n y 
N3 C4 JCA sing 186 n n 
N2 C4 JCA doub 187 n y 
N2 C1 JCA sing 188 n y 
C4 C3 JCA sing 189 n y 
C5 C1 JCA sing 190 n n 
C5 C7 JCA doub 191 n y 
C1 N1 JCA doub 192 n y 
C3 C2 JCA doub 193 n y 
N6 C15 JCA sing 194 n n 
C2 N1 JCA sing 195 n y 
S1 C7 JCA sing 196 n y 
C27 N8 JCA sing 197 n n 
N8 C24 JCA sing 198 n n 
N8 C25 JCA sing 199 n n 
C15 C16 JCA sing 200 n n 
C15 O1 JCA doub 201 n n 
C24 C23 JCA sing 202 n n 
C23 N7 JCA sing 203 n n 
C17 C16 JCA doub 204 n y 
C17 C18 JCA sing 205 n y 
C16 C21 JCA sing 206 n y 
C25 C26 JCA sing 207 n n 
C18 C19 JCA doub 208 n y 
C21 C20 JCA doub 209 n y 
C26 N7 JCA sing 210 n n 
N7 C22 JCA sing 211 n n 
C19 C20 JCA sing 212 n y 
C19 C22 JCA sing 213 n n 
N3 H1 JCA sing 214 n n 
N3 H2 JCA sing 215 n n 
C7 H3 JCA sing 216 n n 
C17 H4 JCA sing 217 n n 
C20 H5 JCA sing 218 n n 
C21 H6 JCA sing 219 n n 
C22 H7 JCA sing 220 n n 
C22 H8 JCA sing 221 n n 
C24 H9 JCA sing 222 n n 
C24 H10 JCA sing 223 n n 
C26 H11 JCA sing 224 n n 
C26 H12 JCA sing 225 n n 
C2 H13 JCA sing 226 n n 
C3 H14 JCA sing 227 n n 
N5 H15 JCA sing 228 n n 
C9 H16 JCA sing 229 n n 
C11 H17 JCA sing 230 n n 
C12 H18 JCA sing 231 n n 
C14 H19 JCA sing 232 n n 
C14 H20 JCA sing 233 n n 
C14 H21 JCA sing 234 n n 
N6 H22 JCA sing 235 n n 
C18 H23 JCA sing 236 n n 
C23 H25 JCA sing 237 n n 
C23 H26 JCA sing 238 n n 
C25 H28 JCA sing 239 n n 
C25 H29 JCA sing 240 n n 
C27 H30 JCA sing 241 n n 
C27 H31 JCA sing 242 n n 
C27 H32 JCA sing 243 n n 
#
_atom_sites.entry_id                     7ZI1 
_atom_sites.fract_transf_matrix[1][1]    0.014572 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 301 301 UDP UDP . 
C 3 JCA A 1 302 401 JCA LIG . 
D 3 JCA A 1 303 501 JCA LIG . 
E 4 NA A 1 304 1 NA NA . 
F 5 HOH A 1 401 27 HOH HOH . 
F 5 HOH A 2 402 67 HOH HOH . 
F 5 HOH A 3 403 68 HOH HOH . 
F 5 HOH A 4 404 36 HOH HOH . 
F 5 HOH A 5 405 43 HOH HOH . 
F 5 HOH A 6 406 10 HOH HOH . 
F 5 HOH A 7 407 55 HOH HOH . 
F 5 HOH A 8 408 25 HOH HOH . 
F 5 HOH A 9 409 86 HOH HOH . 
F 5 HOH A 10 410 17 HOH HOH . 
F 5 HOH A 11 411 58 HOH HOH . 
F 5 HOH A 12 412 56 HOH HOH . 
F 5 HOH A 13 413 88 HOH HOH . 
F 5 HOH A 14 414 83 HOH HOH . 
F 5 HOH A 15 415 21 HOH HOH . 
F 5 HOH A 16 416 34 HOH HOH . 
F 5 HOH A 17 417 8 HOH HOH . 
F 5 HOH A 18 418 37 HOH HOH . 
F 5 HOH A 19 419 77 HOH HOH . 
F 5 HOH A 20 420 39 HOH HOH . 
F 5 HOH A 21 421 59 HOH HOH . 
F 5 HOH A 22 422 50 HOH HOH . 
F 5 HOH A 23 423 40 HOH HOH . 
F 5 HOH A 24 424 82 HOH HOH . 
F 5 HOH A 25 425 24 HOH HOH . 
F 5 HOH A 26 426 22 HOH HOH . 
F 5 HOH A 27 427 74 HOH HOH . 
F 5 HOH A 28 428 11 HOH HOH . 
F 5 HOH A 29 429 23 HOH HOH . 
F 5 HOH A 30 430 79 HOH HOH . 
F 5 HOH A 31 431 75 HOH HOH . 
F 5 HOH A 32 432 20 HOH HOH . 
F 5 HOH A 33 433 3 HOH HOH . 
F 5 HOH A 34 434 5 HOH HOH . 
F 5 HOH A 35 435 52 HOH HOH . 
F 5 HOH A 36 436 13 HOH HOH . 
F 5 HOH A 37 437 90 HOH HOH . 
F 5 HOH A 38 438 62 HOH HOH . 
F 5 HOH A 39 439 6 HOH HOH . 
F 5 HOH A 40 440 66 HOH HOH . 
F 5 HOH A 41 441 26 HOH HOH . 
F 5 HOH A 42 442 30 HOH HOH . 
F 5 HOH A 43 443 73 HOH HOH . 
F 5 HOH A 44 444 78 HOH HOH . 
F 5 HOH A 45 445 44 HOH HOH . 
F 5 HOH A 46 446 54 HOH HOH . 
F 5 HOH A 47 447 48 HOH HOH . 
F 5 HOH A 48 448 45 HOH HOH . 
F 5 HOH A 49 449 16 HOH HOH . 
F 5 HOH A 50 450 32 HOH HOH . 
F 5 HOH A 51 451 53 HOH HOH . 
F 5 HOH A 52 452 51 HOH HOH . 
F 5 HOH A 53 453 42 HOH HOH . 
F 5 HOH A 54 454 9 HOH HOH . 
F 5 HOH A 55 455 92 HOH HOH . 
F 5 HOH A 56 456 72 HOH HOH . 
F 5 HOH A 57 457 2 HOH HOH . 
F 5 HOH A 58 458 7 HOH HOH . 
F 5 HOH A 59 459 33 HOH HOH . 
F 5 HOH A 60 460 46 HOH HOH . 
F 5 HOH A 61 461 19 HOH HOH . 
F 5 HOH A 62 462 47 HOH HOH . 
F 5 HOH A 63 463 70 HOH HOH . 
F 5 HOH A 64 464 76 HOH HOH . 
F 5 HOH A 65 465 71 HOH HOH . 
F 5 HOH A 66 466 49 HOH HOH . 
F 5 HOH A 67 467 57 HOH HOH . 
F 5 HOH A 68 468 4 HOH HOH . 
F 5 HOH A 69 469 60 HOH HOH . 
F 5 HOH A 70 470 31 HOH HOH . 
F 5 HOH A 71 471 93 HOH HOH . 
F 5 HOH A 72 472 1 HOH HOH . 
F 5 HOH A 73 473 28 HOH HOH . 
F 5 HOH A 74 474 81 HOH HOH . 
F 5 HOH A 75 475 18 HOH HOH . 
F 5 HOH A 76 476 35 HOH HOH . 
F 5 HOH A 77 477 38 HOH HOH . 
F 5 HOH A 78 478 94 HOH HOH . 
F 5 HOH A 79 479 64 HOH HOH . 
F 5 HOH A 80 480 61 HOH HOH . 
F 5 HOH A 81 481 80 HOH HOH . 
F 5 HOH A 82 482 14 HOH HOH . 
F 5 HOH A 83 483 65 HOH HOH . 
F 5 HOH A 84 484 84 HOH HOH . 
F 5 HOH A 85 485 15 HOH HOH . 
F 5 HOH A 86 486 41 HOH HOH . 
F 5 HOH A 87 487 12 HOH HOH . 
F 5 HOH A 88 488 29 HOH HOH . 
F 5 HOH A 89 489 63 HOH HOH . 
F 5 HOH A 90 490 89 HOH HOH . 
F 5 HOH A 91 491 87 HOH HOH . 
F 5 HOH A 92 492 91 HOH HOH . 
F 5 HOH A 93 493 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 JCA . . . C 3 -12.194 -27.699 10.195 1 27.92 ? N1 JCA 302 A 1 
HETATM 2 N N3 JCA . . . C 3 -8.834 -25.466 9.597 1 27.73 ? N3 JCA 302 A 1 
HETATM 3 C C4 JCA . . . C 3 -9.959 -26.186 9.792 1 28.45 ? C4 JCA 302 A 1 
HETATM 4 C C5 JCA . . . C 3 -10.9 -29.682 9.981 1 29.67 ? C5 JCA 302 A 1 
HETATM 5 C C6 JCA . . . C 3 -11.68 -31.713 9.572 1 32.49 ? C6 JCA 302 A 1 
HETATM 6 C C7 JCA . . . C 3 -9.843 -30.41 10.449 1 31.63 ? C7 JCA 302 A 1 
HETATM 7 C C8 JCA . . . C 3 -12.342 -33.991 8.819 1 31.41 ? C8 JCA 302 A 1 
HETATM 8 C C10 JCA . . . C 3 -11.356 -36.112 9.348 1 31.18 ? C10 JCA 302 A 1 
HETATM 9 C C13 JCA . . . C 3 -12.949 -34.538 7.692 1 31.63 ? C13 JCA 302 A 1 
HETATM 10 C C15 JCA . . . C 3 -9.74 -36.711 11.096 1 42.8 ? C15 JCA 302 A 1 
HETATM 11 C C17 JCA . . . C 3 -9.483 -39.17 11.581 1 45.48 ? C17 JCA 302 A 1 
HETATM 12 C C20 JCA . . . C 3 -6.964 -38.737 12.656 1 44.63 ? C20 JCA 302 A 1 
HETATM 13 C C21 JCA . . . C 3 -7.689 -37.68 12.129 1 45.03 ? C21 JCA 302 A 1 
HETATM 14 C C22 JCA . . . C 3 -6.701 -41.188 13.215 1 58.97 ? C22 JCA 302 A 1 
HETATM 15 C C24 JCA . . . C 3 -3.557 -41.2 11.101 1 78.17 ? C24 JCA 302 A 1 
HETATM 16 C C26 JCA . . . C 3 -5.414 -43.021 12.226 1 70.86 ? C26 JCA 302 A 1 
HETATM 17 C C1 JCA . . . C 3 -10.985 -28.241 9.983 1 28.96 ? C1 JCA 302 A 1 
HETATM 18 C C2 JCA . . . C 3 -12.289 -26.358 10.172 1 28.72 ? C2 JCA 302 A 1 
HETATM 19 C C3 JCA . . . C 3 -11.187 -25.55 10.016 1 26.59 ? C3 JCA 302 A 1 
HETATM 20 N N2 JCA . . . C 3 -9.868 -27.52 9.773 1 26.09 ? N2 JCA 302 A 1 
HETATM 21 N N4 JCA . . . C 3 -11.949 -30.443 9.469 1 29.52 ? N4 JCA 302 A 1 
HETATM 22 S S1 JCA . . . C 3 -10.149 -32.099 10.301 1 29.41 ? S1 JCA 302 A 1 
HETATM 23 N N5 JCA . . . C 3 -12.566 -32.641 9.109 1 32.83 ? N5 JCA 302 A 1 
HETATM 24 C C9 JCA . . . C 3 -11.551 -34.769 9.659 1 35.2 ? C9 JCA 302 A 1 
HETATM 25 C C11 JCA . . . C 3 -11.96 -36.669 8.243 1 29.49 ? C11 JCA 302 A 1 
HETATM 26 C C12 JCA . . . C 3 -12.744 -35.887 7.421 1 34.62 ? C12 JCA 302 A 1 
HETATM 27 C C14 JCA . . . C 3 -13.811 -33.719 6.779 1 34.74 ? C14 JCA 302 A 1 
HETATM 28 N N6 JCA . . . C 3 -10.58 -37.002 10.095 1 33.25 ? N6 JCA 302 A 1 
HETATM 29 C C16 JCA . . . C 3 -8.958 -37.882 11.601 1 43.63 ? C16 JCA 302 A 1 
HETATM 30 O O1 JCA . . . C 3 -9.665 -35.598 11.635 1 48.87 ? O1 JCA 302 A 1 
HETATM 31 C C18 JCA . . . C 3 -8.754 -40.229 12.106 1 45.56 ? C18 JCA 302 A 1 
HETATM 32 C C19 JCA . . . C 3 -7.474 -40.032 12.623 1 47.77 ? C19 JCA 302 A 1 
HETATM 33 N N7 JCA . . . C 3 -5.436 -41.599 12.581 1 69.55 ? N7 JCA 302 A 1 
HETATM 34 C C23 JCA . . . C 3 -4.986 -40.822 11.423 1 76.96 ? C23 JCA 302 A 1 
HETATM 35 N N8 JCA . . . C 3 -3.426 -42.632 10.819 1 78.21 ? N8 JCA 302 A 1 
HETATM 36 C C25 JCA . . . C 3 -4.002 -43.442 11.893 1 73.56 ? C25 JCA 302 A 1 
HETATM 37 C C27 JCA . . . C 3 -2.025 -42.994 10.586 1 73.1 ? C27 JCA 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           37 
#