data_7ZI1 # _model_server_result.job_id 8U3CHMe7up7Uf8olEXRAZQ _model_server_result.datetime_utc '2024-11-22 20:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7ZI1 # _exptl.entry_id 7ZI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.645 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[[4-(4-azanylpyrimidin-2-yl)-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI1 _cell.length_a 68.625 _cell.length_b 68.625 _cell.length_c 120.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 E NA NA . A NA 304 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 E NA NA . A NA 304 1_555 F O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C27 H30 N8 O S' _chem_comp.formula_weight 514.645 _chem_comp.id JCA _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[[4-(4-azanylpyrimidin-2-yl)-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 JCA sing 173 n n C12 C13 JCA doub 174 n y C12 C11 JCA sing 175 n y C13 C8 JCA sing 176 n y C11 C10 JCA doub 177 n y C8 N5 JCA sing 178 n n C8 C9 JCA doub 179 n y N5 C6 JCA sing 180 n n C10 C9 JCA sing 181 n y C10 N6 JCA sing 182 n n N4 C6 JCA doub 183 n y N4 C5 JCA sing 184 n y C6 S1 JCA sing 185 n y N3 C4 JCA sing 186 n n N2 C4 JCA doub 187 n y N2 C1 JCA sing 188 n y C4 C3 JCA sing 189 n y C5 C1 JCA sing 190 n n C5 C7 JCA doub 191 n y C1 N1 JCA doub 192 n y C3 C2 JCA doub 193 n y N6 C15 JCA sing 194 n n C2 N1 JCA sing 195 n y S1 C7 JCA sing 196 n y C27 N8 JCA sing 197 n n N8 C24 JCA sing 198 n n N8 C25 JCA sing 199 n n C15 C16 JCA sing 200 n n C15 O1 JCA doub 201 n n C24 C23 JCA sing 202 n n C23 N7 JCA sing 203 n n C17 C16 JCA doub 204 n y C17 C18 JCA sing 205 n y C16 C21 JCA sing 206 n y C25 C26 JCA sing 207 n n C18 C19 JCA doub 208 n y C21 C20 JCA doub 209 n y C26 N7 JCA sing 210 n n N7 C22 JCA sing 211 n n C19 C20 JCA sing 212 n y C19 C22 JCA sing 213 n n N3 H1 JCA sing 214 n n N3 H2 JCA sing 215 n n C7 H3 JCA sing 216 n n C17 H4 JCA sing 217 n n C20 H5 JCA sing 218 n n C21 H6 JCA sing 219 n n C22 H7 JCA sing 220 n n C22 H8 JCA sing 221 n n C24 H9 JCA sing 222 n n C24 H10 JCA sing 223 n n C26 H11 JCA sing 224 n n C26 H12 JCA sing 225 n n C2 H13 JCA sing 226 n n C3 H14 JCA sing 227 n n N5 H15 JCA sing 228 n n C9 H16 JCA sing 229 n n C11 H17 JCA sing 230 n n C12 H18 JCA sing 231 n n C14 H19 JCA sing 232 n n C14 H20 JCA sing 233 n n C14 H21 JCA sing 234 n n N6 H22 JCA sing 235 n n C18 H23 JCA sing 236 n n C23 H25 JCA sing 237 n n C23 H26 JCA sing 238 n n C25 H28 JCA sing 239 n n C25 H29 JCA sing 240 n n C27 H30 JCA sing 241 n n C27 H31 JCA sing 242 n n C27 H32 JCA sing 243 n n # _atom_sites.entry_id 7ZI1 _atom_sites.fract_transf_matrix[1][1] 0.014572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 JCA A 1 302 401 JCA LIG . D 3 JCA A 1 303 501 JCA LIG . E 4 NA A 1 304 1 NA NA . F 5 HOH A 1 401 27 HOH HOH . F 5 HOH A 2 402 67 HOH HOH . F 5 HOH A 3 403 68 HOH HOH . F 5 HOH A 4 404 36 HOH HOH . F 5 HOH A 5 405 43 HOH HOH . F 5 HOH A 6 406 10 HOH HOH . F 5 HOH A 7 407 55 HOH HOH . F 5 HOH A 8 408 25 HOH HOH . F 5 HOH A 9 409 86 HOH HOH . F 5 HOH A 10 410 17 HOH HOH . F 5 HOH A 11 411 58 HOH HOH . F 5 HOH A 12 412 56 HOH HOH . F 5 HOH A 13 413 88 HOH HOH . F 5 HOH A 14 414 83 HOH HOH . F 5 HOH A 15 415 21 HOH HOH . F 5 HOH A 16 416 34 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 37 HOH HOH . F 5 HOH A 19 419 77 HOH HOH . F 5 HOH A 20 420 39 HOH HOH . F 5 HOH A 21 421 59 HOH HOH . F 5 HOH A 22 422 50 HOH HOH . F 5 HOH A 23 423 40 HOH HOH . F 5 HOH A 24 424 82 HOH HOH . F 5 HOH A 25 425 24 HOH HOH . F 5 HOH A 26 426 22 HOH HOH . F 5 HOH A 27 427 74 HOH HOH . F 5 HOH A 28 428 11 HOH HOH . F 5 HOH A 29 429 23 HOH HOH . F 5 HOH A 30 430 79 HOH HOH . F 5 HOH A 31 431 75 HOH HOH . F 5 HOH A 32 432 20 HOH HOH . F 5 HOH A 33 433 3 HOH HOH . F 5 HOH A 34 434 5 HOH HOH . F 5 HOH A 35 435 52 HOH HOH . F 5 HOH A 36 436 13 HOH HOH . F 5 HOH A 37 437 90 HOH HOH . F 5 HOH A 38 438 62 HOH HOH . F 5 HOH A 39 439 6 HOH HOH . F 5 HOH A 40 440 66 HOH HOH . F 5 HOH A 41 441 26 HOH HOH . F 5 HOH A 42 442 30 HOH HOH . F 5 HOH A 43 443 73 HOH HOH . F 5 HOH A 44 444 78 HOH HOH . F 5 HOH A 45 445 44 HOH HOH . F 5 HOH A 46 446 54 HOH HOH . F 5 HOH A 47 447 48 HOH HOH . F 5 HOH A 48 448 45 HOH HOH . F 5 HOH A 49 449 16 HOH HOH . F 5 HOH A 50 450 32 HOH HOH . F 5 HOH A 51 451 53 HOH HOH . F 5 HOH A 52 452 51 HOH HOH . F 5 HOH A 53 453 42 HOH HOH . F 5 HOH A 54 454 9 HOH HOH . F 5 HOH A 55 455 92 HOH HOH . F 5 HOH A 56 456 72 HOH HOH . F 5 HOH A 57 457 2 HOH HOH . F 5 HOH A 58 458 7 HOH HOH . F 5 HOH A 59 459 33 HOH HOH . F 5 HOH A 60 460 46 HOH HOH . F 5 HOH A 61 461 19 HOH HOH . F 5 HOH A 62 462 47 HOH HOH . F 5 HOH A 63 463 70 HOH HOH . F 5 HOH A 64 464 76 HOH HOH . F 5 HOH A 65 465 71 HOH HOH . F 5 HOH A 66 466 49 HOH HOH . F 5 HOH A 67 467 57 HOH HOH . F 5 HOH A 68 468 4 HOH HOH . F 5 HOH A 69 469 60 HOH HOH . F 5 HOH A 70 470 31 HOH HOH . F 5 HOH A 71 471 93 HOH HOH . F 5 HOH A 72 472 1 HOH HOH . F 5 HOH A 73 473 28 HOH HOH . F 5 HOH A 74 474 81 HOH HOH . F 5 HOH A 75 475 18 HOH HOH . F 5 HOH A 76 476 35 HOH HOH . F 5 HOH A 77 477 38 HOH HOH . F 5 HOH A 78 478 94 HOH HOH . F 5 HOH A 79 479 64 HOH HOH . F 5 HOH A 80 480 61 HOH HOH . F 5 HOH A 81 481 80 HOH HOH . F 5 HOH A 82 482 14 HOH HOH . F 5 HOH A 83 483 65 HOH HOH . F 5 HOH A 84 484 84 HOH HOH . F 5 HOH A 85 485 15 HOH HOH . F 5 HOH A 86 486 41 HOH HOH . F 5 HOH A 87 487 12 HOH HOH . F 5 HOH A 88 488 29 HOH HOH . F 5 HOH A 89 489 63 HOH HOH . F 5 HOH A 90 490 89 HOH HOH . F 5 HOH A 91 491 87 HOH HOH . F 5 HOH A 92 492 91 HOH HOH . F 5 HOH A 93 493 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JCA . . . D 3 -14.289 -36.989 11.588 1 41.61 ? N1 JCA 303 A 1 HETATM 2 N N3 JCA . . . D 3 -13.534 -33.054 12.229 1 40.9 ? N3 JCA 303 A 1 HETATM 3 C C4 JCA . . . D 3 -13.835 -34.334 11.973 1 40.56 ? C4 JCA 303 A 1 HETATM 4 C C5 JCA . . . D 3 -12.67 -37.467 13.302 1 40.09 ? C5 JCA 303 A 1 HETATM 5 C C6 JCA . . . D 3 -12.114 -39.477 14.038 1 47.61 ? C6 JCA 303 A 1 HETATM 6 C C7 JCA . . . D 3 -11.727 -37.102 14.21 1 38.17 ? C7 JCA 303 A 1 HETATM 7 C C8 JCA . . . D 3 -11.408 -41.689 14.897 1 59.35 ? C8 JCA 303 A 1 HETATM 8 C C10 JCA . . . D 3 -9.422 -42.166 16.15 1 60.79 ? C10 JCA 303 A 1 HETATM 9 C C13 JCA . . . D 3 -12.052 -42.815 15.43 1 67.67 ? C13 JCA 303 A 1 HETATM 10 C C15 JCA . . . D 3 -7.493 -40.617 16.476 1 54.05 ? C15 JCA 303 A 1 HETATM 11 C C17 JCA . . . D 3 -5.134 -41.501 16.624 1 47.9 ? C17 JCA 303 A 1 HETATM 12 C C20 JCA . . . D 3 -4.545 -39.624 18.558 1 53.04 ? C20 JCA 303 A 1 HETATM 13 C C21 JCA . . . D 3 -5.808 -39.663 18 1 52.51 ? C21 JCA 303 A 1 HETATM 14 C C22 JCA . . . D 3 -2.215 -40.504 18.835 1 61.5 ? C22 JCA 303 A 1 HETATM 15 C C24 JCA . . . D 3 -1.276 -41.234 22.389 1 65.12 ? C24 JCA 303 A 1 HETATM 16 C C26 JCA . . . D 3 -3.321 -41.562 20.779 1 69.01 ? C26 JCA 303 A 1 HETATM 17 C C1 JCA . . . D 3 -13.403 -36.533 12.48 1 39.38 ? C1 JCA 303 A 1 HETATM 18 C C2 JCA . . . D 3 -14.951 -36.047 10.814 1 40.35 ? C2 JCA 303 A 1 HETATM 19 C C3 JCA . . . D 3 -14.77 -34.702 10.997 1 39.56 ? C3 JCA 303 A 1 HETATM 20 N N2 JCA . . . D 3 -13.172 -35.248 12.687 1 42.41 ? N2 JCA 303 A 1 HETATM 21 N N4 JCA . . . D 3 -12.931 -38.83 13.25 1 41.88 ? N4 JCA 303 A 1 HETATM 22 S S1 JCA . . . D 3 -11.112 -38.468 15.058 1 45.05 ? S1 JCA 303 A 1 HETATM 23 N N5 JCA . . . D 3 -12.078 -40.84 14.001 1 49.47 ? N5 JCA 303 A 1 HETATM 24 C C9 JCA . . . D 3 -10.105 -41.365 15.247 1 54.68 ? C9 JCA 303 A 1 HETATM 25 C C11 JCA . . . D 3 -10.042 -43.291 16.693 1 59.37 ? C11 JCA 303 A 1 HETATM 26 C C12 JCA . . . D 3 -11.342 -43.608 16.336 1 62.83 ? C12 JCA 303 A 1 HETATM 27 C C14 JCA . . . D 3 -13.464 -43.175 15.058 1 68.26 ? C14 JCA 303 A 1 HETATM 28 N N6 JCA . . . D 3 -8.085 -41.84 16.478 1 60.11 ? N6 JCA 303 A 1 HETATM 29 C C16 JCA . . . D 3 -6.102 -40.587 17.012 1 51.79 ? C16 JCA 303 A 1 HETATM 30 O O1 JCA . . . D 3 -8.069 -39.585 16.157 1 61.08 ? O1 JCA 303 A 1 HETATM 31 C C18 JCA . . . D 3 -3.878 -41.473 17.194 1 48.11 ? C18 JCA 303 A 1 HETATM 32 C C19 JCA . . . D 3 -3.562 -40.52 18.154 1 56.45 ? C19 JCA 303 A 1 HETATM 33 N N7 JCA . . . D 3 -2.351 -40.559 20.302 1 65.32 ? N7 JCA 303 A 1 HETATM 34 C C23 JCA . . . D 3 -1.069 -40.677 21.003 1 65.49 ? C23 JCA 303 A 1 HETATM 35 N N8 JCA . . . D 3 -1.668 -42.638 22.312 1 67.99 ? N8 JCA 303 A 1 HETATM 36 C C25 JCA . . . D 3 -2.682 -42.844 21.269 1 69.39 ? C25 JCA 303 A 1 HETATM 37 C C27 JCA . . . D 3 -2.068 -43.167 23.62 1 64.74 ? C27 JCA 303 A 1 # _model_server_stats.io_time_ms 123 _model_server_stats.parse_time_ms 196 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 37 #