data_7ZI2 # _model_server_result.job_id Z7sCsqnj9BlDOmIWIOTacA _model_server_result.datetime_utc '2024-11-13 05:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZI2 # _exptl.entry_id 7ZI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.66 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[[4-[4,6-bis(azanyl)pyrimidin-2-yl]-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI2 _cell.length_a 68.836 _cell.length_b 68.836 _cell.length_c 123.656 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? # _chem_comp.formula 'C27 H31 N9 O S' _chem_comp.formula_weight 529.66 _chem_comp.id J7W _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[[4-[4,6-bis(azanyl)pyrimidin-2-yl]-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 J7W sing 173 n n C12 C13 J7W doub 174 n y C12 C11 J7W sing 175 n y C13 C8 J7W sing 176 n y C11 C10 J7W doub 177 n y C8 N6 J7W sing 178 n n C8 C9 J7W doub 179 n y N4 C4 J7W sing 180 n n N6 C6 J7W sing 181 n n C4 C3 J7W doub 182 n y C4 N2 J7W sing 183 n y C10 C9 J7W sing 184 n y C10 N7 J7W sing 185 n n N5 C6 J7W doub 186 n y N5 C5 J7W sing 187 n y C3 C2 J7W sing 188 n y N2 C1 J7W doub 189 n y C6 S1 J7W sing 190 n y C2 N3 J7W sing 191 n n C2 N1 J7W doub 192 n y C1 N1 J7W sing 193 n y C1 C5 J7W sing 194 n n C5 C7 J7W doub 195 n y N7 C15 J7W sing 196 n n S1 C7 J7W sing 197 n y C27 N9 J7W sing 198 n n C24 N9 J7W sing 199 n n C24 C23 J7W sing 200 n n N9 C25 J7W sing 201 n n C23 N8 J7W sing 202 n n C15 C16 J7W sing 203 n n C15 O1 J7W doub 204 n n C17 C16 J7W doub 205 n y C17 C18 J7W sing 206 n y C16 C21 J7W sing 207 n y C18 C19 J7W doub 208 n y C21 C20 J7W doub 209 n y C25 C26 J7W sing 210 n n N8 C26 J7W sing 211 n n N8 C22 J7W sing 212 n n C19 C20 J7W sing 213 n y C19 C22 J7W sing 214 n n N3 H1 J7W sing 215 n n N3 H2 J7W sing 216 n n C7 H3 J7W sing 217 n n C17 H4 J7W sing 218 n n C20 H5 J7W sing 219 n n C21 H6 J7W sing 220 n n C22 H7 J7W sing 221 n n C22 H8 J7W sing 222 n n C24 H9 J7W sing 223 n n C24 H10 J7W sing 224 n n C26 H11 J7W sing 225 n n C26 H12 J7W sing 226 n n C3 H13 J7W sing 227 n n N4 H14 J7W sing 228 n n N4 H15 J7W sing 229 n n N6 H16 J7W sing 230 n n C9 H17 J7W sing 231 n n C11 H18 J7W sing 232 n n C12 H19 J7W sing 233 n n C14 H20 J7W sing 234 n n C14 H21 J7W sing 235 n n C14 H22 J7W sing 236 n n N7 H23 J7W sing 237 n n C18 H24 J7W sing 238 n n C23 H26 J7W sing 239 n n C23 H27 J7W sing 240 n n C25 H29 J7W sing 241 n n C25 H30 J7W sing 242 n n C27 H31 J7W sing 243 n n C27 H32 J7W sing 244 n n C27 H33 J7W sing 245 n n # _atom_sites.entry_id 7ZI2 _atom_sites.fract_transf_matrix[1][1] 0.014527 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J7W A 1 302 401 J7W LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 7 HOH HOH . E 5 HOH A 2 402 27 HOH HOH . E 5 HOH A 3 403 14 HOH HOH . E 5 HOH A 4 404 2 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 30 HOH HOH . E 5 HOH A 7 407 24 HOH HOH . E 5 HOH A 8 408 1 HOH HOH . E 5 HOH A 9 409 39 HOH HOH . E 5 HOH A 10 410 12 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 20 HOH HOH . E 5 HOH A 13 413 31 HOH HOH . E 5 HOH A 14 414 13 HOH HOH . E 5 HOH A 15 415 38 HOH HOH . E 5 HOH A 16 416 10 HOH HOH . E 5 HOH A 17 417 36 HOH HOH . E 5 HOH A 18 418 21 HOH HOH . E 5 HOH A 19 419 23 HOH HOH . E 5 HOH A 20 420 17 HOH HOH . E 5 HOH A 21 421 22 HOH HOH . E 5 HOH A 22 422 18 HOH HOH . E 5 HOH A 23 423 15 HOH HOH . E 5 HOH A 24 424 4 HOH HOH . E 5 HOH A 25 425 6 HOH HOH . E 5 HOH A 26 426 3 HOH HOH . E 5 HOH A 27 427 16 HOH HOH . E 5 HOH A 28 428 34 HOH HOH . E 5 HOH A 29 429 25 HOH HOH . E 5 HOH A 30 430 29 HOH HOH . E 5 HOH A 31 431 33 HOH HOH . E 5 HOH A 32 432 9 HOH HOH . E 5 HOH A 33 433 26 HOH HOH . E 5 HOH A 34 434 8 HOH HOH . E 5 HOH A 35 435 37 HOH HOH . E 5 HOH A 36 436 35 HOH HOH . E 5 HOH A 37 437 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J7W . . . C 3 -12.276 -27.976 10.003 1 47.47 ? N1 J7W 302 A 1 HETATM 2 N N3 J7W . . . C 3 -13.679 -26.213 9.998 1 44.08 ? N3 J7W 302 A 1 HETATM 3 C C4 J7W . . . C 3 -10.085 -26.414 9.565 1 41.51 ? C4 J7W 302 A 1 HETATM 4 C C5 J7W . . . C 3 -10.934 -29.929 10.02 1 42.73 ? C5 J7W 302 A 1 HETATM 5 C C6 J7W . . . C 3 -11.721 -31.993 9.795 1 43.83 ? C6 J7W 302 A 1 HETATM 6 C C7 J7W . . . C 3 -9.856 -30.62 10.48 1 45.17 ? C7 J7W 302 A 1 HETATM 7 C C8 J7W . . . C 3 -12.274 -34.323 9.175 1 46.82 ? C8 J7W 302 A 1 HETATM 8 C C10 J7W . . . C 3 -11.14 -36.398 9.581 1 45.39 ? C10 J7W 302 A 1 HETATM 9 C C13 J7W . . . C 3 -12.895 -34.854 8.05 1 47.97 ? C13 J7W 302 A 1 HETATM 10 C C15 J7W . . . C 3 -9.538 -37.051 11.364 1 62.48 ? C15 J7W 302 A 1 HETATM 11 C C17 J7W . . . C 3 -9.398 -39.518 11.784 1 65.13 ? C17 J7W 302 A 1 HETATM 12 C C20 J7W . . . C 3 -6.865 -39.243 12.877 1 70.67 ? C20 J7W 302 A 1 HETATM 13 C C21 J7W . . . C 3 -7.537 -38.133 12.396 1 68.22 ? C21 J7W 302 A 1 HETATM 14 C C22 J7W . . . C 3 -6.699 -41.721 13.32 1 96.13 ? C22 J7W 302 A 1 HETATM 15 C C24 J7W . . . C 3 -3.806 -41.631 10.894 1 120.06 ? C24 J7W 302 A 1 HETATM 16 C C26 J7W . . . C 3 -4.806 -43.205 13.017 1 118.64 ? C26 J7W 302 A 1 HETATM 17 C C1 J7W . . . C 3 -11.042 -28.484 9.902 1 43.42 ? C1 J7W 302 A 1 HETATM 18 C C2 J7W . . . C 3 -12.435 -26.658 9.894 1 47.36 ? C2 J7W 302 A 1 HETATM 19 C C3 J7W . . . C 3 -11.341 -25.804 9.651 1 43.75 ? C3 J7W 302 A 1 HETATM 20 N N2 J7W . . . C 3 -9.943 -27.741 9.682 1 39.96 ? N2 J7W 302 A 1 HETATM 21 N N4 J7W . . . C 3 -8.987 -25.698 9.336 1 43.97 ? N4 J7W 302 A 1 HETATM 22 N N5 J7W . . . C 3 -12.013 -30.731 9.649 1 46.64 ? N5 J7W 302 A 1 HETATM 23 S S1 J7W . . . C 3 -10.127 -32.316 10.361 1 47.21 ? S1 J7W 302 A 1 HETATM 24 N N6 J7W . . . C 3 -12.578 -33 9.523 1 46.89 ? N6 J7W 302 A 1 HETATM 25 C C9 J7W . . . C 3 -11.383 -35.08 9.936 1 50.08 ? C9 J7W 302 A 1 HETATM 26 C C11 J7W . . . C 3 -11.753 -36.941 8.463 1 47.6 ? C11 J7W 302 A 1 HETATM 27 C C12 J7W . . . C 3 -12.622 -36.176 7.713 1 50.8 ? C12 J7W 302 A 1 HETATM 28 C C14 J7W . . . C 3 -13.859 -34.045 7.229 1 52.13 ? C14 J7W 302 A 1 HETATM 29 N N7 J7W . . . C 3 -10.247 -37.263 10.238 1 54.48 ? N7 J7W 302 A 1 HETATM 30 C C16 J7W . . . C 3 -8.808 -38.259 11.855 1 64.14 ? C16 J7W 302 A 1 HETATM 31 O O1 J7W . . . C 3 -9.505 -35.979 11.974 1 65.65 ? O1 J7W 302 A 1 HETATM 32 C C18 J7W . . . C 3 -8.725 -40.627 12.27 1 72.03 ? C18 J7W 302 A 1 HETATM 33 C C19 J7W . . . C 3 -7.446 -40.505 12.816 1 79.44 ? C19 J7W 302 A 1 HETATM 34 N N8 J7W . . . C 3 -5.333 -41.857 12.792 1 114.26 ? N8 J7W 302 A 1 HETATM 35 C C23 J7W . . . C 3 -5.239 -41.55 11.361 1 120.5 ? C23 J7W 302 A 1 HETATM 36 N N9 J7W . . . C 3 -3.268 -42.968 11.119 1 126.35 ? N9 J7W 302 A 1 HETATM 37 C C25 J7W . . . C 3 -3.376 -43.298 12.538 1 127.77 ? C25 J7W 302 A 1 HETATM 38 C C27 J7W . . . C 3 -1.882 -43.065 10.654 1 120.82 ? C27 J7W 302 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #