data_7ZI3 # _model_server_result.job_id HOPv0JDDts-czY7yMPyODA _model_server_result.datetime_utc '2024-11-13 06:06:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7ZI3 # _exptl.entry_id 7ZI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 646.75 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[[2-methyl-5-[4-(4-methylpiperazin-1-yl)sulfonyl-2-(trifluoromethyl)phenyl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI3 _cell.length_a 68.94 _cell.length_b 68.94 _cell.length_c 120.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C29 H33 F3 N8 O2 S2' _chem_comp.formula_weight 646.75 _chem_comp.id J98 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[[2-methyl-5-[4-(4-methylpiperazin-1-yl)sulfonyl-2-(trifluoromethyl)phenyl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 J98 sing 173 n n C28 C27 J98 doub 174 n y C28 C11 J98 sing 175 n y C27 C26 J98 sing 176 n y N5 C9 J98 sing 177 n n C9 C8 J98 doub 178 n y C9 N6 J98 sing 179 n y C8 C7 J98 sing 180 n y N6 C6 J98 doub 181 n y C7 N3 J98 doub 182 n y C7 N4 J98 sing 183 n n C6 N3 J98 sing 184 n y C6 C5 J98 sing 185 n n N2 C5 J98 sing 186 n y N2 C4 J98 doub 187 n y C5 C10 J98 doub 188 n y C3 N1 J98 sing 189 n n C3 C2 J98 sing 190 n n C4 N1 J98 sing 191 n n C4 S1 J98 sing 192 n y N1 C11 J98 sing 193 n n C11 C12 J98 doub 194 n y C10 S1 J98 sing 195 n y C26 C13 J98 doub 196 n y C1 C2 J98 sing 197 n n C12 C13 J98 sing 198 n y C13 C14 J98 sing 199 n n F3 C25 J98 sing 200 n n C14 C15 J98 doub 201 n y C14 C24 J98 sing 202 n y F2 C25 J98 sing 203 n n C25 C24 J98 sing 204 n n C25 F1 J98 sing 205 n n C15 C16 J98 sing 206 n y C24 C23 J98 doub 207 n y C16 C17 J98 doub 208 n y C20 N8 J98 sing 209 n n C23 C17 J98 sing 210 n y C17 S2 J98 sing 211 n n N8 C21 J98 sing 212 n n N8 C19 J98 sing 213 n n C22 C21 J98 sing 214 n n C22 N7 J98 sing 215 n n C18 C19 J98 sing 216 n n C18 N7 J98 sing 217 n n N7 S2 J98 sing 218 n n S2 O1 J98 doub 219 n n S2 O2 J98 doub 220 n n C8 H1 J98 sing 221 n n C10 H2 J98 sing 222 n n C15 H3 J98 sing 223 n n C20 H4 J98 sing 224 n n C20 H5 J98 sing 225 n n C20 H6 J98 sing 226 n n C21 H7 J98 sing 227 n n C21 H8 J98 sing 228 n n C22 H9 J98 sing 229 n n C22 H10 J98 sing 230 n n C26 H11 J98 sing 231 n n C1 H12 J98 sing 232 n n C1 H13 J98 sing 233 n n C1 H14 J98 sing 234 n n C2 H15 J98 sing 235 n n C2 H16 J98 sing 236 n n C3 H17 J98 sing 237 n n C3 H18 J98 sing 238 n n N4 H19 J98 sing 239 n n N4 H20 J98 sing 240 n n N5 H21 J98 sing 241 n n N5 H22 J98 sing 242 n n C12 H23 J98 sing 243 n n C16 H24 J98 sing 244 n n C18 H25 J98 sing 245 n n C18 H26 J98 sing 246 n n C19 H27 J98 sing 247 n n C19 H28 J98 sing 248 n n C23 H30 J98 sing 249 n n C27 H31 J98 sing 250 n n C29 H32 J98 sing 251 n n C29 H33 J98 sing 252 n n C29 H34 J98 sing 253 n n # _atom_sites.entry_id 7ZI3 _atom_sites.fract_transf_matrix[1][1] 0.014505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J98 A 1 301 301 J98 LIG . C 3 UDP A 1 302 302 UDP UDP . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 62 HOH HOH . E 5 HOH A 2 402 19 HOH HOH . E 5 HOH A 3 403 64 HOH HOH . E 5 HOH A 4 404 46 HOH HOH . E 5 HOH A 5 405 52 HOH HOH . E 5 HOH A 6 406 42 HOH HOH . E 5 HOH A 7 407 65 HOH HOH . E 5 HOH A 8 408 18 HOH HOH . E 5 HOH A 9 409 53 HOH HOH . E 5 HOH A 10 410 45 HOH HOH . E 5 HOH A 11 411 29 HOH HOH . E 5 HOH A 12 412 40 HOH HOH . E 5 HOH A 13 413 27 HOH HOH . E 5 HOH A 14 414 39 HOH HOH . E 5 HOH A 15 415 50 HOH HOH . E 5 HOH A 16 416 51 HOH HOH . E 5 HOH A 17 417 25 HOH HOH . E 5 HOH A 18 418 49 HOH HOH . E 5 HOH A 19 419 4 HOH HOH . E 5 HOH A 20 420 8 HOH HOH . E 5 HOH A 21 421 48 HOH HOH . E 5 HOH A 22 422 36 HOH HOH . E 5 HOH A 23 423 24 HOH HOH . E 5 HOH A 24 424 26 HOH HOH . E 5 HOH A 25 425 14 HOH HOH . E 5 HOH A 26 426 5 HOH HOH . E 5 HOH A 27 427 61 HOH HOH . E 5 HOH A 28 428 6 HOH HOH . E 5 HOH A 29 429 56 HOH HOH . E 5 HOH A 30 430 21 HOH HOH . E 5 HOH A 31 431 44 HOH HOH . E 5 HOH A 32 432 47 HOH HOH . E 5 HOH A 33 433 30 HOH HOH . E 5 HOH A 34 434 2 HOH HOH . E 5 HOH A 35 435 57 HOH HOH . E 5 HOH A 36 436 43 HOH HOH . E 5 HOH A 37 437 55 HOH HOH . E 5 HOH A 38 438 1 HOH HOH . E 5 HOH A 39 439 35 HOH HOH . E 5 HOH A 40 440 63 HOH HOH . E 5 HOH A 41 441 15 HOH HOH . E 5 HOH A 42 442 58 HOH HOH . E 5 HOH A 43 443 11 HOH HOH . E 5 HOH A 44 444 33 HOH HOH . E 5 HOH A 45 445 22 HOH HOH . E 5 HOH A 46 446 10 HOH HOH . E 5 HOH A 47 447 28 HOH HOH . E 5 HOH A 48 448 17 HOH HOH . E 5 HOH A 49 449 7 HOH HOH . E 5 HOH A 50 450 37 HOH HOH . E 5 HOH A 51 451 12 HOH HOH . E 5 HOH A 52 452 3 HOH HOH . E 5 HOH A 53 453 32 HOH HOH . E 5 HOH A 54 454 60 HOH HOH . E 5 HOH A 55 455 54 HOH HOH . E 5 HOH A 56 456 34 HOH HOH . E 5 HOH A 57 457 41 HOH HOH . E 5 HOH A 58 458 9 HOH HOH . E 5 HOH A 59 459 16 HOH HOH . E 5 HOH A 60 460 23 HOH HOH . E 5 HOH A 61 461 59 HOH HOH . E 5 HOH A 62 462 38 HOH HOH . E 5 HOH A 63 463 20 HOH HOH . E 5 HOH A 64 464 31 HOH HOH . E 5 HOH A 65 465 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J98 . . . B 2 -12.538 -32.751 10.052 1 48.6 ? N1 J98 301 A 1 HETATM 2 N N3 J98 . . . B 2 -12.181 -27.693 9.888 1 47.14 ? N3 J98 301 A 1 HETATM 3 C C4 J98 . . . B 2 -11.684 -31.738 10.054 1 47.3 ? C4 J98 301 A 1 HETATM 4 C C5 J98 . . . B 2 -10.892 -29.683 9.89 1 42.95 ? C5 J98 301 A 1 HETATM 5 C C6 J98 . . . B 2 -10.984 -28.243 9.75 1 46.25 ? C6 J98 301 A 1 HETATM 6 C C7 J98 . . . B 2 -12.297 -26.374 9.798 1 47.17 ? C7 J98 301 A 1 HETATM 7 C C8 J98 . . . B 2 -11.197 -25.561 9.516 1 42.39 ? C8 J98 301 A 1 HETATM 8 C C10 J98 . . . B 2 -9.728 -30.353 10.113 1 44.57 ? C10 J98 301 A 1 HETATM 9 C C13 J98 . . . B 2 -11.029 -35.92 11.336 1 46.04 ? C13 J98 301 A 1 HETATM 10 C C15 J98 . . . B 2 -9.265 -36.014 13.101 1 50.59 ? C15 J98 301 A 1 HETATM 11 C C17 J98 . . . B 2 -9.571 -37.223 15.152 1 51.24 ? C17 J98 301 A 1 HETATM 12 C C20 J98 . . . B 2 -7.492 -41.923 14.397 1 73.28 ? C20 J98 301 A 1 HETATM 13 C C21 J98 . . . B 2 -6.434 -40.709 16.231 1 67.97 ? C21 J98 301 A 1 HETATM 14 C C22 J98 . . . B 2 -7.045 -39.348 15.933 1 72.18 ? C22 J98 301 A 1 HETATM 15 C C24 J98 . . . B 2 -11.306 -37.24 13.474 1 58.85 ? C24 J98 301 A 1 HETATM 16 C C26 J98 . . . B 2 -10.988 -36.645 10.153 1 47.34 ? C26 J98 301 A 1 HETATM 17 C C28 J98 . . . B 2 -11.986 -34.812 8.906 1 49.51 ? C28 J98 301 A 1 HETATM 18 C C1 J98 . . . B 2 -16.103 -31.906 11.186 1 58.04 ? C1 J98 301 A 1 HETATM 19 C C2 J98 . . . B 2 -14.638 -32.264 11.346 1 52.09 ? C2 J98 301 A 1 HETATM 20 C C3 J98 . . . B 2 -13.995 -32.507 9.991 1 49.99 ? C3 J98 301 A 1 HETATM 21 N N2 J98 . . . B 2 -12.016 -30.496 9.816 1 45.54 ? N2 J98 301 A 1 HETATM 22 N N4 J98 . . . B 2 -13.526 -25.887 9.949 1 49.76 ? N4 J98 301 A 1 HETATM 23 C C9 J98 . . . B 2 -9.971 -26.211 9.395 1 43.87 ? C9 J98 301 A 1 HETATM 24 N N5 J98 . . . B 2 -8.862 -25.537 9.16 1 42.91 ? N5 J98 301 A 1 HETATM 25 N N6 J98 . . . B 2 -9.876 -27.549 9.476 1 40.75 ? N6 J98 301 A 1 HETATM 26 S S1 J98 . . . B 2 -10.002 -32.037 10.276 1 45.78 ? S1 J98 301 A 1 HETATM 27 C C11 J98 . . . B 2 -12.049 -34.085 10.087 1 46.49 ? C11 J98 301 A 1 HETATM 28 C C12 J98 . . . B 2 -11.552 -34.628 11.281 1 47.85 ? C12 J98 301 A 1 HETATM 29 C C14 J98 . . . B 2 -10.51 -36.448 12.635 1 50.16 ? C14 J98 301 A 1 HETATM 30 C C16 J98 . . . B 2 -8.791 -36.404 14.345 1 57.14 ? C16 J98 301 A 1 HETATM 31 S S2 J98 . . . B 2 -8.994 -37.729 16.756 1 61.91 ? S2 J98 301 A 1 HETATM 32 O O1 J98 . . . B 2 -7.928 -36.871 17.199 1 50.27 ? O1 J98 301 A 1 HETATM 33 O O2 J98 . . . B 2 -10.144 -37.914 17.58 1 63.63 ? O2 J98 301 A 1 HETATM 34 N N7 J98 . . . B 2 -8.356 -39.233 16.605 1 68.32 ? N7 J98 301 A 1 HETATM 35 C C18 J98 . . . B 2 -9.283 -40.305 16.207 1 70.51 ? C18 J98 301 A 1 HETATM 36 C C19 J98 . . . B 2 -8.632 -41.64 16.533 1 78.36 ? C19 J98 301 A 1 HETATM 37 N N8 J98 . . . B 2 -7.34 -41.797 15.853 1 75.97 ? N8 J98 301 A 1 HETATM 38 C C23 J98 . . . B 2 -10.816 -37.642 14.715 1 55.83 ? C23 J98 301 A 1 HETATM 39 C C25 J98 . . . B 2 -12.678 -37.651 13.05 1 60.84 ? C25 J98 301 A 1 HETATM 40 F F1 J98 . . . B 2 -13.32 -38.321 14.007 1 64.46 ? F1 J98 301 A 1 HETATM 41 F F2 J98 . . . B 2 -13.457 -36.629 12.761 1 60.63 ? F2 J98 301 A 1 HETATM 42 F F3 J98 . . . B 2 -12.7 -38.387 11.942 1 59.68 ? F3 J98 301 A 1 HETATM 43 C C27 J98 . . . B 2 -11.453 -36.102 8.963 1 46.54 ? C27 J98 301 A 1 HETATM 44 C C29 J98 . . . B 2 -12.481 -34.238 7.625 1 45.98 ? C29 J98 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 44 #