data_7ZI5 # _model_server_result.job_id Oz0vYh1TrAQBuLLWNbbUfw _model_server_result.datetime_utc '2024-11-27 23:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZI5 # _exptl.entry_id 7ZI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.62 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-azanylpyrimidin-2-yl)-N-[2-methyl-5-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]-1,3-thiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI5 _cell.length_a 68.755 _cell.length_b 68.755 _cell.length_c 123.088 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'C26 H29 N7 S' _chem_comp.formula_weight 471.62 _chem_comp.id J9I _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-azanylpyrimidin-2-yl)-N-[2-methyl-5-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]-1,3-thiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 J9I sing 173 n n C12 C13 J9I doub 174 n y C12 C11 J9I sing 175 n y C13 C8 J9I sing 176 n y C11 C10 J9I doub 177 n y C8 N4 J9I sing 178 n n C8 C9 J9I doub 179 n y N4 C6 J9I sing 180 n n N7 C4 J9I sing 181 n n N3 C6 J9I doub 182 n y N3 C5 J9I sing 183 n y C4 N2 J9I doub 184 n y C4 C3 J9I sing 185 n y C6 S1 J9I sing 186 n y C10 C9 J9I sing 187 n y C10 C15 J9I sing 188 n n N2 C1 J9I sing 189 n y C3 C2 J9I doub 190 n y C1 C5 J9I sing 191 n n C1 N1 J9I doub 192 n y C5 C7 J9I doub 193 n y C2 N1 J9I sing 194 n y S1 C7 J9I sing 195 n y C15 C20 J9I doub 196 n y C15 C16 J9I sing 197 n y C20 C19 J9I sing 198 n y C16 C17 J9I doub 199 n y C19 C18 J9I doub 200 n y C24 C25 J9I sing 201 n n C24 N6 J9I sing 202 n n C25 N5 J9I sing 203 n n C26 N6 J9I sing 204 n n N6 C23 J9I sing 205 n n C17 C18 J9I sing 206 n y C18 C21 J9I sing 207 n n N5 C21 J9I sing 208 n n N5 C22 J9I sing 209 n n C23 C22 J9I sing 210 n n C7 H1 J9I sing 211 n n C17 H2 J9I sing 212 n n C20 H3 J9I sing 213 n n C21 H4 J9I sing 214 n n C21 H5 J9I sing 215 n n C22 H6 J9I sing 216 n n C22 H7 J9I sing 217 n n C24 H8 J9I sing 218 n n C24 H9 J9I sing 219 n n C26 H10 J9I sing 220 n n C26 H11 J9I sing 221 n n C26 H12 J9I sing 222 n n C2 H13 J9I sing 223 n n C3 H14 J9I sing 224 n n N4 H15 J9I sing 225 n n C9 H16 J9I sing 226 n n C11 H17 J9I sing 227 n n C12 H18 J9I sing 228 n n C14 H19 J9I sing 229 n n C14 H20 J9I sing 230 n n C14 H21 J9I sing 231 n n C16 H22 J9I sing 232 n n C19 H23 J9I sing 233 n n C23 H25 J9I sing 234 n n C23 H26 J9I sing 235 n n C25 H28 J9I sing 236 n n C25 H29 J9I sing 237 n n N7 H30 J9I sing 238 n n N7 H31 J9I sing 239 n n # _atom_sites.entry_id 7ZI5 _atom_sites.fract_transf_matrix[1][1] 0.014544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J9I A 1 302 401 J9I LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 13 HOH HOH . E 5 HOH A 2 402 23 HOH HOH . E 5 HOH A 3 403 42 HOH HOH . E 5 HOH A 4 404 27 HOH HOH . E 5 HOH A 5 405 9 HOH HOH . E 5 HOH A 6 406 30 HOH HOH . E 5 HOH A 7 407 39 HOH HOH . E 5 HOH A 8 408 33 HOH HOH . E 5 HOH A 9 409 21 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 3 HOH HOH . E 5 HOH A 12 412 8 HOH HOH . E 5 HOH A 13 413 46 HOH HOH . E 5 HOH A 14 414 1 HOH HOH . E 5 HOH A 15 415 2 HOH HOH . E 5 HOH A 16 416 44 HOH HOH . E 5 HOH A 17 417 22 HOH HOH . E 5 HOH A 18 418 20 HOH HOH . E 5 HOH A 19 419 29 HOH HOH . E 5 HOH A 20 420 26 HOH HOH . E 5 HOH A 21 421 45 HOH HOH . E 5 HOH A 22 422 4 HOH HOH . E 5 HOH A 23 423 36 HOH HOH . E 5 HOH A 24 424 12 HOH HOH . E 5 HOH A 25 425 18 HOH HOH . E 5 HOH A 26 426 37 HOH HOH . E 5 HOH A 27 427 41 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 34 HOH HOH . E 5 HOH A 30 430 7 HOH HOH . E 5 HOH A 31 431 25 HOH HOH . E 5 HOH A 32 432 11 HOH HOH . E 5 HOH A 33 433 15 HOH HOH . E 5 HOH A 34 434 43 HOH HOH . E 5 HOH A 35 435 19 HOH HOH . E 5 HOH A 36 436 5 HOH HOH . E 5 HOH A 37 437 16 HOH HOH . E 5 HOH A 38 438 24 HOH HOH . E 5 HOH A 39 439 17 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 32 HOH HOH . E 5 HOH A 42 442 6 HOH HOH . E 5 HOH A 43 443 14 HOH HOH . E 5 HOH A 44 444 35 HOH HOH . E 5 HOH A 45 445 31 HOH HOH . E 5 HOH A 46 446 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J9I . . . C 3 -12.193 -27.601 10.265 1 43.69 ? N1 J9I 302 A 1 HETATM 2 N N3 J9I . . . C 3 -11.893 -30.408 9.851 1 41.43 ? N3 J9I 302 A 1 HETATM 3 C C4 J9I . . . C 3 -10.021 -26.027 9.881 1 43.5 ? C4 J9I 302 A 1 HETATM 4 C C5 J9I . . . C 3 -10.834 -29.562 10.191 1 41.5 ? C5 J9I 302 A 1 HETATM 5 C C6 J9I . . . C 3 -11.52 -31.657 9.881 1 44.2 ? C6 J9I 302 A 1 HETATM 6 C C7 J9I . . . C 3 -9.688 -30.216 10.532 1 46.93 ? C7 J9I 302 A 1 HETATM 7 C C8 J9I . . . C 3 -11.982 -34.03 9.284 1 43.69 ? C8 J9I 302 A 1 HETATM 8 C C10 J9I . . . C 3 -10.885 -36.098 9.943 1 48.66 ? C10 J9I 302 A 1 HETATM 9 C C13 J9I . . . C 3 -12.36 -34.598 8.069 1 45.91 ? C13 J9I 302 A 1 HETATM 10 C C15 J9I . . . C 3 -10.114 -36.902 10.92 1 46.88 ? C15 J9I 302 A 1 HETATM 11 C C17 J9I . . . C 3 -8.378 -37.162 12.586 1 62.15 ? C17 J9I 302 A 1 HETATM 12 C C20 J9I . . . C 3 -10.361 -38.26 11.025 1 53.9 ? C20 J9I 302 A 1 HETATM 13 C C21 J9I . . . C 3 -7.93 -39.435 13.654 1 68.27 ? C21 J9I 302 A 1 HETATM 14 C C22 J9I . . . C 3 -6.111 -40.932 14.03 1 76.72 ? C22 J9I 302 A 1 HETATM 15 C C24 J9I . . . C 3 -4.583 -39.836 11.946 1 82.24 ? C24 J9I 302 A 1 HETATM 16 C C26 J9I . . . C 3 -2.736 -41.32 12.432 1 77.47 ? C26 J9I 302 A 1 HETATM 17 C C1 J9I . . . C 3 -10.97 -28.112 10.138 1 42.77 ? C1 J9I 302 A 1 HETATM 18 C C2 J9I . . . C 3 -12.345 -26.262 10.197 1 44.17 ? C2 J9I 302 A 1 HETATM 19 C C3 J9I . . . C 3 -11.268 -25.423 10.019 1 46.89 ? C3 J9I 302 A 1 HETATM 20 N N2 J9I . . . C 3 -9.875 -27.354 9.954 1 41.55 ? N2 J9I 302 A 1 HETATM 21 S S1 J9I . . . C 3 -9.879 -31.923 10.38 1 47.38 ? S1 J9I 302 A 1 HETATM 22 N N4 J9I . . . C 3 -12.33 -32.684 9.518 1 46.24 ? N4 J9I 302 A 1 HETATM 23 C C9 J9I . . . C 3 -11.246 -34.777 10.21 1 48.86 ? C9 J9I 302 A 1 HETATM 24 C C11 J9I . . . C 3 -11.291 -36.665 8.734 1 45.72 ? C11 J9I 302 A 1 HETATM 25 C C12 J9I . . . C 3 -12.009 -35.926 7.807 1 49.42 ? C12 J9I 302 A 1 HETATM 26 C C14 J9I . . . C 3 -13.112 -33.815 7.051 1 50.35 ? C14 J9I 302 A 1 HETATM 27 C C16 J9I . . . C 3 -9.097 -36.367 11.702 1 53.4 ? C16 J9I 302 A 1 HETATM 28 C C18 J9I . . . C 3 -8.643 -38.526 12.681 1 59.98 ? C18 J9I 302 A 1 HETATM 29 C C19 J9I . . . C 3 -9.643 -39.054 11.888 1 54.29 ? C19 J9I 302 A 1 HETATM 30 N N5 J9I . . . C 3 -6.494 -39.637 13.46 1 69.07 ? N5 J9I 302 A 1 HETATM 31 C C23 J9I . . . C 3 -4.62 -41.145 13.94 1 76.15 ? C23 J9I 302 A 1 HETATM 32 N N6 J9I . . . C 3 -4.183 -41.107 12.548 1 77.74 ? N6 J9I 302 A 1 HETATM 33 C C25 J9I . . . C 3 -6.076 -39.6 12.062 1 77.73 ? C25 J9I 302 A 1 HETATM 34 N N7 J9I . . . C 3 -8.931 -25.296 9.704 1 43.31 ? N7 J9I 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #