data_7ZI5
#
_model_server_result.job_id            78Z3MdLfp9U3MfOuZ2MpNA 
_model_server_result.datetime_utc      '2024-11-24 05:35:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zi5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7ZI5 
#
_exptl.entry_id    7ZI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZI5 
_cell.length_a            68.755 
_cell.length_b            68.755 
_cell.length_c            123.088 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7ZI5 
_atom_sites.fract_transf_matrix[1][1]    0.014544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 301 301 UDP UDP . 
C 3 J9I A 1 302 401 J9I LIG . 
D 4 NA A 1 303 1 NA NA . 
E 5 HOH A 1 401 13 HOH HOH . 
E 5 HOH A 2 402 23 HOH HOH . 
E 5 HOH A 3 403 42 HOH HOH . 
E 5 HOH A 4 404 27 HOH HOH . 
E 5 HOH A 5 405 9 HOH HOH . 
E 5 HOH A 6 406 30 HOH HOH . 
E 5 HOH A 7 407 39 HOH HOH . 
E 5 HOH A 8 408 33 HOH HOH . 
E 5 HOH A 9 409 21 HOH HOH . 
E 5 HOH A 10 410 10 HOH HOH . 
E 5 HOH A 11 411 3 HOH HOH . 
E 5 HOH A 12 412 8 HOH HOH . 
E 5 HOH A 13 413 46 HOH HOH . 
E 5 HOH A 14 414 1 HOH HOH . 
E 5 HOH A 15 415 2 HOH HOH . 
E 5 HOH A 16 416 44 HOH HOH . 
E 5 HOH A 17 417 22 HOH HOH . 
E 5 HOH A 18 418 20 HOH HOH . 
E 5 HOH A 19 419 29 HOH HOH . 
E 5 HOH A 20 420 26 HOH HOH . 
E 5 HOH A 21 421 45 HOH HOH . 
E 5 HOH A 22 422 4 HOH HOH . 
E 5 HOH A 23 423 36 HOH HOH . 
E 5 HOH A 24 424 12 HOH HOH . 
E 5 HOH A 25 425 18 HOH HOH . 
E 5 HOH A 26 426 37 HOH HOH . 
E 5 HOH A 27 427 41 HOH HOH . 
E 5 HOH A 28 428 28 HOH HOH . 
E 5 HOH A 29 429 34 HOH HOH . 
E 5 HOH A 30 430 7 HOH HOH . 
E 5 HOH A 31 431 25 HOH HOH . 
E 5 HOH A 32 432 11 HOH HOH . 
E 5 HOH A 33 433 15 HOH HOH . 
E 5 HOH A 34 434 43 HOH HOH . 
E 5 HOH A 35 435 19 HOH HOH . 
E 5 HOH A 36 436 5 HOH HOH . 
E 5 HOH A 37 437 16 HOH HOH . 
E 5 HOH A 38 438 24 HOH HOH . 
E 5 HOH A 39 439 17 HOH HOH . 
E 5 HOH A 40 440 40 HOH HOH . 
E 5 HOH A 41 441 32 HOH HOH . 
E 5 HOH A 42 442 6 HOH HOH . 
E 5 HOH A 43 443 14 HOH HOH . 
E 5 HOH A 44 444 35 HOH HOH . 
E 5 HOH A 45 445 31 HOH HOH . 
E 5 HOH A 46 446 38 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -26.516 
_atom_site.Cartn_y               -7.091 
_atom_site.Cartn_z               9.204 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#