data_7ZI7
#
_model_server_result.job_id            YJDq_bXejvuHSADnx87Z9g 
_model_server_result.datetime_utc      '2025-07-21 04:13:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZI7 
#
_exptl.entry_id    7ZI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              527.727 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(4-azanylpyrimidin-2-yl)-N-[2-methyl-5-[4-[2-(4-methylpiperazin-1-yl)ethyl]phenyl]phenyl]-N-propyl-1,3-thiazol-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZI7 
_cell.length_a            68.627 
_cell.length_b            68.627 
_cell.length_c            120.601 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
#
_chem_comp.formula           'C30 H37 N7 S' 
_chem_comp.formula_weight    527.727 
_chem_comp.id                JCM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(4-azanylpyrimidin-2-yl)-N-[2-methyl-5-[4-[2-(4-methylpiperazin-1-yl)ethyl]phenyl]phenyl]-N-propyl-1,3-thiazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 JCM sing 173 n n 
C21 C22 JCM doub 174 n y 
C21 C20 JCM sing 175 n y 
C22 C4 JCM sing 176 n y 
N6 C29 JCM sing 177 n n 
C20 C6 JCM doub 178 n y 
C29 N7 JCM doub 179 n y 
C29 C28 JCM sing 180 n y 
N7 C26 JCM sing 181 n y 
C28 C27 JCM doub 182 n y 
C4 N1 JCM sing 183 n n 
C4 C5 JCM doub 184 n y 
C26 C25 JCM sing 185 n n 
C26 N5 JCM doub 186 n y 
C27 N5 JCM sing 187 n y 
C25 N4 JCM sing 188 n y 
C25 C30 JCM doub 189 n y 
N4 C24 JCM doub 190 n y 
N1 C24 JCM sing 191 n n 
N1 C3 JCM sing 192 n n 
C30 S1 JCM sing 193 n y 
C24 S1 JCM sing 194 n y 
C3 C2 JCM sing 195 n n 
C6 C5 JCM sing 196 n y 
C6 C7 JCM sing 197 n n 
C1 C2 JCM sing 198 n n 
C7 C19 JCM doub 199 n y 
C7 C8 JCM sing 200 n y 
C19 C18 JCM sing 201 n y 
C18 C10 JCM doub 202 n y 
C8 C9 JCM doub 203 n y 
C9 C10 JCM sing 204 n y 
C10 C11 JCM sing 205 n n 
C12 C11 JCM sing 206 n n 
C12 N2 JCM sing 207 n n 
C17 N2 JCM sing 208 n n 
C17 C16 JCM sing 209 n n 
N2 C13 JCM sing 210 n n 
C16 N3 JCM sing 211 n n 
C13 C14 JCM sing 212 n n 
N3 C14 JCM sing 213 n n 
N3 C15 JCM sing 214 n n 
C5 H2 JCM sing 215 n n 
C8 H3 JCM sing 216 n n 
C13 H4 JCM sing 217 n n 
C13 H5 JCM sing 218 n n 
C15 H6 JCM sing 219 n n 
C15 H7 JCM sing 220 n n 
C15 H8 JCM sing 221 n n 
C17 H9 JCM sing 222 n n 
C17 H10 JCM sing 223 n n 
C20 H11 JCM sing 224 n n 
C21 H12 JCM sing 225 n n 
C28 H13 JCM sing 226 n n 
C1 H14 JCM sing 227 n n 
C1 H15 JCM sing 228 n n 
C1 H16 JCM sing 229 n n 
C2 H17 JCM sing 230 n n 
C2 H18 JCM sing 231 n n 
C3 H19 JCM sing 232 n n 
C3 H20 JCM sing 233 n n 
C9 H21 JCM sing 234 n n 
C11 H22 JCM sing 235 n n 
C11 H23 JCM sing 236 n n 
C12 H24 JCM sing 237 n n 
C12 H25 JCM sing 238 n n 
C14 H27 JCM sing 239 n n 
C14 H28 JCM sing 240 n n 
C16 H29 JCM sing 241 n n 
C16 H30 JCM sing 242 n n 
C18 H31 JCM sing 243 n n 
C19 H32 JCM sing 244 n n 
C23 H33 JCM sing 245 n n 
C23 H34 JCM sing 246 n n 
C23 H35 JCM sing 247 n n 
C27 H36 JCM sing 248 n n 
N6 H37 JCM sing 249 n n 
N6 H38 JCM sing 250 n n 
C30 H39 JCM sing 251 n n 
#
_atom_sites.entry_id                     7ZI7 
_atom_sites.fract_transf_matrix[1][1]    0.014572 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 301 301 UDP UDP . 
C 3 JCM A 1 302 302 JCM LIG . 
D 4 NA A 1 303 1 NA NA . 
E 5 HOH A 1 401 48 HOH HOH . 
E 5 HOH A 2 402 54 HOH HOH . 
E 5 HOH A 3 403 69 HOH HOH . 
E 5 HOH A 4 404 57 HOH HOH . 
E 5 HOH A 5 405 60 HOH HOH . 
E 5 HOH A 6 406 26 HOH HOH . 
E 5 HOH A 7 407 76 HOH HOH . 
E 5 HOH A 8 408 59 HOH HOH . 
E 5 HOH A 9 409 35 HOH HOH . 
E 5 HOH A 10 410 75 HOH HOH . 
E 5 HOH A 11 411 64 HOH HOH . 
E 5 HOH A 12 412 86 HOH HOH . 
E 5 HOH A 13 413 37 HOH HOH . 
E 5 HOH A 14 414 56 HOH HOH . 
E 5 HOH A 15 415 15 HOH HOH . 
E 5 HOH A 16 416 2 HOH HOH . 
E 5 HOH A 17 417 12 HOH HOH . 
E 5 HOH A 18 418 49 HOH HOH . 
E 5 HOH A 19 419 29 HOH HOH . 
E 5 HOH A 20 420 80 HOH HOH . 
E 5 HOH A 21 421 46 HOH HOH . 
E 5 HOH A 22 422 32 HOH HOH . 
E 5 HOH A 23 423 27 HOH HOH . 
E 5 HOH A 24 424 78 HOH HOH . 
E 5 HOH A 25 425 9 HOH HOH . 
E 5 HOH A 26 426 13 HOH HOH . 
E 5 HOH A 27 427 36 HOH HOH . 
E 5 HOH A 28 428 28 HOH HOH . 
E 5 HOH A 29 429 47 HOH HOH . 
E 5 HOH A 30 430 44 HOH HOH . 
E 5 HOH A 31 431 87 HOH HOH . 
E 5 HOH A 32 432 18 HOH HOH . 
E 5 HOH A 33 433 16 HOH HOH . 
E 5 HOH A 34 434 40 HOH HOH . 
E 5 HOH A 35 435 1 HOH HOH . 
E 5 HOH A 36 436 17 HOH HOH . 
E 5 HOH A 37 437 7 HOH HOH . 
E 5 HOH A 38 438 25 HOH HOH . 
E 5 HOH A 39 439 33 HOH HOH . 
E 5 HOH A 40 440 3 HOH HOH . 
E 5 HOH A 41 441 31 HOH HOH . 
E 5 HOH A 42 442 45 HOH HOH . 
E 5 HOH A 43 443 74 HOH HOH . 
E 5 HOH A 44 444 79 HOH HOH . 
E 5 HOH A 45 445 30 HOH HOH . 
E 5 HOH A 46 446 67 HOH HOH . 
E 5 HOH A 47 447 61 HOH HOH . 
E 5 HOH A 48 448 55 HOH HOH . 
E 5 HOH A 49 449 24 HOH HOH . 
E 5 HOH A 50 450 85 HOH HOH . 
E 5 HOH A 51 451 52 HOH HOH . 
E 5 HOH A 52 452 5 HOH HOH . 
E 5 HOH A 53 453 34 HOH HOH . 
E 5 HOH A 54 454 10 HOH HOH . 
E 5 HOH A 55 455 88 HOH HOH . 
E 5 HOH A 56 456 21 HOH HOH . 
E 5 HOH A 57 457 14 HOH HOH . 
E 5 HOH A 58 458 8 HOH HOH . 
E 5 HOH A 59 459 20 HOH HOH . 
E 5 HOH A 60 460 6 HOH HOH . 
E 5 HOH A 61 461 4 HOH HOH . 
E 5 HOH A 62 462 43 HOH HOH . 
E 5 HOH A 63 463 68 HOH HOH . 
E 5 HOH A 64 464 62 HOH HOH . 
E 5 HOH A 65 465 11 HOH HOH . 
E 5 HOH A 66 466 66 HOH HOH . 
E 5 HOH A 67 467 77 HOH HOH . 
E 5 HOH A 68 468 83 HOH HOH . 
E 5 HOH A 69 469 63 HOH HOH . 
E 5 HOH A 70 470 38 HOH HOH . 
E 5 HOH A 71 471 42 HOH HOH . 
E 5 HOH A 72 472 50 HOH HOH . 
E 5 HOH A 73 473 84 HOH HOH . 
E 5 HOH A 74 474 39 HOH HOH . 
E 5 HOH A 75 475 23 HOH HOH . 
E 5 HOH A 76 476 53 HOH HOH . 
E 5 HOH A 77 477 22 HOH HOH . 
E 5 HOH A 78 478 58 HOH HOH . 
E 5 HOH A 79 479 72 HOH HOH . 
E 5 HOH A 80 480 19 HOH HOH . 
E 5 HOH A 81 481 51 HOH HOH . 
E 5 HOH A 82 482 70 HOH HOH . 
E 5 HOH A 83 483 71 HOH HOH . 
E 5 HOH A 84 484 73 HOH HOH . 
E 5 HOH A 85 485 81 HOH HOH . 
E 5 HOH A 86 486 41 HOH HOH . 
E 5 HOH A 87 487 82 HOH HOH . 
E 5 HOH A 88 488 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 JCM . . . C 3 -12.733 -32.423 10.262 1 45.19 ? N1 JCM 302 A 1 
HETATM 2 N N3 JCM . . . C 3 -9.602 -43.866 17.553 1 121.33 ? N3 JCM 302 A 1 
HETATM 3 C C4 JCM . . . C 3 -12.355 -33.776 10.001 1 38.76 ? C4 JCM 302 A 1 
HETATM 4 C C5 JCM . . . C 3 -12.043 -34.613 11.064 1 46.99 ? C5 JCM 302 A 1 
HETATM 5 C C6 JCM . . . C 3 -11.648 -35.925 10.835 1 52.03 ? C6 JCM 302 A 1 
HETATM 6 C C7 JCM . . . C 3 -11.388 -36.821 11.994 1 65.66 ? C7 JCM 302 A 1 
HETATM 7 C C8 JCM . . . C 3 -12.39 -37.661 12.474 1 78.63 ? C8 JCM 302 A 1 
HETATM 8 C C10 JCM . . . C 3 -10.946 -38.505 14.215 1 78.58 ? C10 JCM 302 A 1 
HETATM 9 C C13 JCM . . . C 3 -9.407 -41.692 16.403 1 115.2 ? C13 JCM 302 A 1 
HETATM 10 C C15 JCM . . . C 3 -8.932 -45.126 17.887 1 115.33 ? C15 JCM 302 A 1 
HETATM 11 C C17 JCM . . . C 3 -11.517 -42.806 16.457 1 110.18 ? C17 JCM 302 A 1 
HETATM 12 C C20 JCM . . . C 3 -11.582 -36.374 9.517 1 41.12 ? C20 JCM 302 A 1 
HETATM 13 C C21 JCM . . . C 3 -11.898 -35.539 8.458 1 41.51 ? C21 JCM 302 A 1 
HETATM 14 C C22 JCM . . . C 3 -12.283 -34.217 8.684 1 38.97 ? C22 JCM 302 A 1 
HETATM 15 C C24 JCM . . . C 3 -11.795 -31.471 10.313 1 38.07 ? C24 JCM 302 A 1 
HETATM 16 C C26 JCM . . . C 3 -11.029 -27.986 10.017 1 35.57 ? C26 JCM 302 A 1 
HETATM 17 C C28 JCM . . . C 3 -11.21 -25.3 9.799 1 33.97 ? C28 JCM 302 A 1 
HETATM 18 C C1 JCM . . . C 3 -16.275 -31.835 11.641 1 58.2 ? C1 JCM 302 A 1 
HETATM 19 C C2 JCM . . . C 3 -14.788 -32.186 11.675 1 53.64 ? C2 JCM 302 A 1 
HETATM 20 C C3 JCM . . . C 3 -14.178 -32.122 10.297 1 46.73 ? C3 JCM 302 A 1 
HETATM 21 C C9 JCM . . . C 3 -12.165 -38.496 13.557 1 80.24 ? C9 JCM 302 A 1 
HETATM 22 C C11 JCM . . . C 3 -10.686 -39.436 15.373 1 84.78 ? C11 JCM 302 A 1 
HETATM 23 C C12 JCM . . . C 3 -11.317 -40.796 15.089 1 93.07 ? C12 JCM 302 A 1 
HETATM 24 N N2 JCM . . . C 3 -10.624 -41.977 15.628 1 104.99 ? N2 JCM 302 A 1 
HETATM 25 C C14 JCM . . . C 3 -8.724 -42.988 16.779 1 123.66 ? C14 JCM 302 A 1 
HETATM 26 C C16 JCM . . . C 3 -10.844 -44.107 16.823 1 114.26 ? C16 JCM 302 A 1 
HETATM 27 C C18 JCM . . . C 3 -9.95 -37.667 13.739 1 83.26 ? C18 JCM 302 A 1 
HETATM 28 C C19 JCM . . . C 3 -10.166 -36.832 12.655 1 80.74 ? C19 JCM 302 A 1 
HETATM 29 C C23 JCM . . . C 3 -12.565 -33.312 7.554 1 40.78 ? C23 JCM 302 A 1 
HETATM 30 N N4 JCM . . . C 3 -12.096 -30.208 10.197 1 36.53 ? N4 JCM 302 A 1 
HETATM 31 C C25 JCM . . . C 3 -10.934 -29.437 10.137 1 32.67 ? C25 JCM 302 A 1 
HETATM 32 N N5 JCM . . . C 3 -12.235 -27.417 10.149 1 34.98 ? N5 JCM 302 A 1 
HETATM 33 C C27 JCM . . . C 3 -12.316 -26.085 10.019 1 33.55 ? C27 JCM 302 A 1 
HETATM 34 C C29 JCM . . . C 3 -9.99 -25.961 9.662 1 33.04 ? C29 JCM 302 A 1 
HETATM 35 N N6 JCM . . . C 3 -8.857 -25.292 9.42 1 33.96 ? N6 JCM 302 A 1 
HETATM 36 N N7 JCM . . . C 3 -9.915 -27.291 9.772 1 33.62 ? N7 JCM 302 A 1 
HETATM 37 C C30 JCM . . . C 3 -9.78 -30.154 10.28 1 39.23 ? C30 JCM 302 A 1 
HETATM 38 S S1 JCM . . . C 3 -10.103 -31.847 10.365 1 38.23 ? S1 JCM 302 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           451 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#